0.019262
0.011121
0.000000
-0.000000
0.022242
0.000000
0.000000
-0.000000
0.004361
0.00000
0.00000
0.00000
Subramanian, G.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.00
90.00
120.00
51.915
51.915
229.322
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C20 H15 F3 N6 O2 S2
492.497
N-(5-{[(7-methyl-4-oxo-4H-pyrido[1,2-a]pyrimidin-2-yl)methyl]sulfanyl}-1,3,4-thiadiazol-2-yl)-N'-[3-(trifluoromethyl)phenyl]urea
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H8 N O6 P
185.072
n
PHOSPHOSERINE
PHOSPHONOSERINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
UK
Bioorg.Med.Chem.Lett.
BMCLE8
1127
1464-3405
29
126680
126680
10.1016/j.bmcl.2019.126680
31610943
Lead identification and characterization of hTrkA type 2 inhibitors.
2019
100
1
N
PIXEL
2015-11-15
DECTRIS EIGER X 16M
SINGLE WAVELENGTH
M
x-ray
1
1.0
1.0
X06SA
SLS
1.0
SYNCHROTRON
SLS BEAMLINE X06SA
35428.723
High affinity nerve growth factor receptor
2.7.10.1
KINASE DOMAIN
1
man
polymer
492.497
N-(5-{[(7-methyl-4-oxo-4H-pyrido[1,2-a]pyrimidin-2-yl)methyl]sulfanyl}-1,3,4-thiadiazol-2-yl)-N'-[3-(trifluoromethyl)phenyl]urea
1
syn
non-polymer
18.015
water
57
nat
water
Neurotrophic tyrosine kinase receptor type 1,TRK1-transforming tyrosine kinase protein,Tropomyosin-related kinase A,Tyrosine kinase receptor,Tyrosine kinase receptor A,Trk-A,gp140trk,p140-TrkA
no
yes
GLQGHIIENPQYFSDACVHHIKRRDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELL
TMLQHQHIVRFFGVCTEGRPLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAGL
HFVHRDLATRNCLVGQGLVVKIGDFGMSRDIY(SEP)TDYYRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEI
FTYGKQPWYQLSNTEAIDCITQGRELERPRACPPEVYAIMRGCWQREPQQRHSIKDVHARLQALAQAPPVYLDVL
GLQGHIIENPQYFSDACVHHIKRRDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELL
TMLQHQHIVRFFGVCTEGRPLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAGL
HFVHRDLATRNCLVGQGLVVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYG
KQPWYQLSNTEAIDCITQGRELERPRACPPEVYAIMRGCWQREPQQRHSIKDVHARLQALAQAPPVYLDVL
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Human
sample
1
311
NTRK1, MTC, TRK, TRKA
9606
Homo sapiens
7108
Spodoptera frugiperda
Biological sequence
1
2.68
54.12
VAPOR DIFFUSION, HANGING DROP
20mM Tris/HCl, pH=8.5, 50mM NaCl, 2mM DTT, 0.5mM PMSF
277.15
citation
citation_author
repository
Initial release
Data collection
Database references
1
0
2019-10-09
1
1
2019-10-30
_citation.journal_volume
_citation.page_first
_citation.page_last
_citation.pdbx_database_id_PubMed
_citation.title
_citation_author.name
N
RCSB
Y
RCSB
2019-06-30
REL
REL
OOJ
OOJ
SUBJECT OF INVESTIGATION
OOJ
N-(5-{[(7-methyl-4-oxo-4H-pyrido[1,2-a]pyrimidin-2-yl)methyl]sulfanyl}-1,3,4-thiadiazol-2-yl)-N'-[3-(trifluoromethyl)phenyl]urea
HOH
water
Y
INX
1
2
OOJ
OOJ
801
A
HOH
67
3
HOH
HOH
901
A
HOH
68
3
HOH
HOH
902
A
HOH
13
3
HOH
HOH
903
A
HOH
17
3
HOH
HOH
904
A
HOH
69
3
HOH
HOH
905
A
HOH
61
3
HOH
HOH
906
A
HOH
27
3
HOH
HOH
907
A
HOH
51
3
HOH
HOH
908
A
HOH
43
3
HOH
HOH
909
A
HOH
58
3
HOH
HOH
910
A
HOH
37
3
HOH
HOH
911
A
HOH
62
3
HOH
HOH
912
A
HOH
36
3
HOH
HOH
913
A
HOH
3
3
HOH
HOH
914
A
HOH
46
3
HOH
HOH
915
A
HOH
52
3
HOH
HOH
916
A
HOH
22
3
HOH
HOH
917
A
HOH
21
3
HOH
HOH
918
A
HOH
48
3
HOH
HOH
919
A
HOH
49
3
HOH
HOH
920
A
HOH
63
3
HOH
HOH
921
A
HOH
28
3
HOH
HOH
922
A
HOH
33
3
HOH
HOH
923
A
HOH
45
3
HOH
HOH
924
A
HOH
15
3
HOH
HOH
925
A
HOH
6
3
HOH
HOH
926
A
HOH
38
3
HOH
HOH
927
A
HOH
30
3
HOH
HOH
928
A
HOH
9
3
HOH
HOH
929
A
HOH
65
3
HOH
HOH
930
A
HOH
1
3
HOH
HOH
931
A
HOH
7
3
HOH
HOH
932
A
HOH
16
3
HOH
HOH
933
A
HOH
18
3
HOH
HOH
934
A
HOH
23
3
HOH
HOH
935
A
HOH
19
3
HOH
HOH
936
A
HOH
40
3
HOH
HOH
937
A
HOH
32
3
HOH
HOH
938
A
HOH
31
3
HOH
HOH
939
A
HOH
20
3
HOH
HOH
940
A
HOH
53
3
HOH
HOH
941
A
HOH
47
3
HOH
HOH
942
A
HOH
29
3
HOH
HOH
943
A
HOH
59
3
HOH
HOH
944
A
HOH
60
3
HOH
HOH
945
A
HOH
14
3
HOH
HOH
946
A
HOH
5
3
HOH
HOH
947
A
HOH
8
3
HOH
HOH
948
A
HOH
2
3
HOH
HOH
949
A
HOH
25
3
HOH
HOH
950
A
HOH
4
3
HOH
HOH
951
A
HOH
56
3
HOH
HOH
952
A
HOH
64
3
HOH
HOH
953
A
HOH
55
3
HOH
HOH
954
A
HOH
66
3
HOH
HOH
955
A
HOH
39
3
HOH
HOH
956
A
HOH
57
3
HOH
HOH
957
A
n
1
485
A
n
2
486
A
n
3
487
A
n
4
488
A
n
5
489
A
n
6
490
A
n
7
491
A
n
8
492
A
n
9
493
A
n
10
494
A
n
11
495
A
n
12
496
A
n
13
497
A
n
14
498
A
n
15
499
A
ALA
500
n
16
ALA
500
A
CYS
501
n
17
CYS
501
A
VAL
502
n
18
VAL
502
A
HIS
503
n
19
HIS
503
A
HIS
504
n
20
HIS
504
A
ILE
505
n
21
ILE
505
A
LYS
506
n
22
LYS
506
A
ARG
507
n
23
ARG
507
A
ARG
508
n
24
ARG
508
A
ASP
509
n
25
ASP
509
A
ILE
510
n
26
ILE
510
A
VAL
511
n
27
VAL
511
A
LEU
512
n
28
LEU
512
A
LYS
513
n
29
LYS
513
A
TRP
514
n
30
TRP
514
A
GLU
515
n
31
GLU
515
A
LEU
516
n
32
LEU
516
A
GLY
517
n
33
GLY
517
A
GLU
518
n
34
GLU
518
A
GLY
519
n
35
GLY
519
A
ALA
520
n
36
ALA
520
A
PHE
521
n
37
PHE
521
A
GLY
522
n
38
GLY
522
A
LYS
523
n
39
LYS
523
A
VAL
524
n
40
VAL
524
A
PHE
525
n
41
PHE
525
A
LEU
526
n
42
LEU
526
A
ALA
527
n
43
ALA
527
A
GLU
528
n
44
GLU
528
A
CYS
529
n
45
CYS
529
A
HIS
530
n
46
HIS
530
A
ASN
531
n
47
ASN
531
A
LEU
532
n
48
LEU
532
A
LEU
533
n
49
LEU
533
A
PRO
534
n
50
PRO
534
A
GLU
535
n
51
GLU
535
A
GLN
536
n
52
GLN
536
A
ASP
537
n
53
ASP
537
A
LYS
538
n
54
LYS
538
A
MET
539
n
55
MET
539
A
LEU
540
n
56
LEU
540
A
VAL
541
n
57
VAL
541
A
ALA
542
n
58
ALA
542
A
VAL
543
n
59
VAL
543
A
LYS
544
n
60
LYS
544
A
ALA
545
n
61
ALA
545
A
LEU
546
n
62
LEU
546
A
LYS
547
n
63
LYS
547
A
GLU
548
n
64
GLU
548
A
n
65
549
A
n
66
550
A
n
67
551
A
SER
552
n
68
SER
552
A
ALA
553
n
69
ALA
553
A
ARG
554
n
70
ARG
554
A
GLN
555
n
71
GLN
555
A
ASP
556
n
72
ASP
556
A
PHE
557
n
73
PHE
557
A
GLN
558
n
74
GLN
558
A
ARG
559
n
75
ARG
559
A
GLU
560
n
76
GLU
560
A
ALA
561
n
77
ALA
561
A
GLU
562
n
78
GLU
562
A
LEU
563
n
79
LEU
563
A
LEU
564
n
80
LEU
564
A
THR
565
n
81
THR
565
A
MET
566
n
82
MET
566
A
LEU
567
n
83
LEU
567
A
GLN
568
n
84
GLN
568
A
HIS
569
n
85
HIS
569
A
GLN
570
n
86
GLN
570
A
HIS
571
n
87
HIS
571
A
ILE
572
n
88
ILE
572
A
VAL
573
n
89
VAL
573
A
ARG
574
n
90
ARG
574
A
PHE
575
n
91
PHE
575
A
PHE
576
n
92
PHE
576
A
GLY
577
n
93
GLY
577
A
VAL
578
n
94
VAL
578
A
CYS
579
n
95
CYS
579
A
THR
580
n
96
THR
580
A
GLU
581
n
97
GLU
581
A
GLY
582
n
98
GLY
582
A
ARG
583
n
99
ARG
583
A
PRO
584
n
100
PRO
584
A
LEU
585
n
101
LEU
585
A
LEU
586
n
102
LEU
586
A
MET
587
n
103
MET
587
A
VAL
588
n
104
VAL
588
A
PHE
589
n
105
PHE
589
A
GLU
590
n
106
GLU
590
A
TYR
591
n
107
TYR
591
A
MET
592
n
108
MET
592
A
ARG
593
n
109
ARG
593
A
HIS
594
n
110
HIS
594
A
GLY
595
n
111
GLY
595
A
ASP
596
n
112
ASP
596
A
LEU
597
n
113
LEU
597
A
ASN
598
n
114
ASN
598
A
ARG
599
n
115
ARG
599
A
PHE
600
n
116
PHE
600
A
LEU
601
n
117
LEU
601
A
ARG
602
n
118
ARG
602
A
SER
603
n
119
SER
603
A
HIS
604
n
120
HIS
604
A
GLY
605
n
121
GLY
605
A
PRO
606
n
122
PRO
606
A
ASP
607
n
123
ASP
607
A
ALA
608
n
124
ALA
608
A
LYS
609
n
125
LYS
609
A
LEU
610
n
126
LEU
610
A
LEU
611
n
127
LEU
611
A
ALA
612
n
128
ALA
612
A
GLY
613
n
129
GLY
613
A
GLY
614
n
130
GLY
614
A
GLU
615
n
131
GLU
615
A
ASP
616
n
132
ASP
616
A
VAL
617
n
133
VAL
617
A
ALA
618
n
134
ALA
618
A
PRO
619
n
135
PRO
619
A
GLY
620
n
136
GLY
620
A
PRO
621
n
137
PRO
621
A
LEU
622
n
138
LEU
622
A
GLY
623
n
139
GLY
623
A
LEU
624
n
140
LEU
624
A
GLY
625
n
141
GLY
625
A
GLN
626
n
142
GLN
626
A
LEU
627
n
143
LEU
627
A
LEU
628
n
144
LEU
628
A
ALA
629
n
145
ALA
629
A
VAL
630
n
146
VAL
630
A
ALA
631
n
147
ALA
631
A
SER
632
n
148
SER
632
A
GLN
633
n
149
GLN
633
A
VAL
634
n
150
VAL
634
A
ALA
635
n
151
ALA
635
A
ALA
636
n
152
ALA
636
A
GLY
637
n
153
GLY
637
A
MET
638
n
154
MET
638
A
VAL
639
n
155
VAL
639
A
TYR
640
n
156
TYR
640
A
LEU
641
n
157
LEU
641
A
ALA
642
n
158
ALA
642
A
GLY
643
n
159
GLY
643
A
LEU
644
n
160
LEU
644
A
HIS
645
n
161
HIS
645
A
PHE
646
n
162
PHE
646
A
VAL
647
n
163
VAL
647
A
HIS
648
n
164
HIS
648
A
ARG
649
n
165
ARG
649
A
ASP
650
n
166
ASP
650
A
LEU
651
n
167
LEU
651
A
ALA
652
n
168
ALA
652
A
THR
653
n
169
THR
653
A
ARG
654
n
170
ARG
654
A
ASN
655
n
171
ASN
655
A
CYS
656
n
172
CYS
656
A
LEU
657
n
173
LEU
657
A
VAL
658
n
174
VAL
658
A
GLY
659
n
175
GLY
659
A
GLN
660
n
176
GLN
660
A
GLY
661
n
177
GLY
661
A
LEU
662
n
178
LEU
662
A
VAL
663
n
179
VAL
663
A
VAL
664
n
180
VAL
664
A
LYS
665
n
181
LYS
665
A
ILE
666
n
182
ILE
666
A
GLY
667
n
183
GLY
667
A
ASP
668
n
184
ASP
668
A
PHE
669
n
185
PHE
669
A
GLY
670
n
186
GLY
670
A
MET
671
n
187
MET
671
A
SER
672
n
188
SER
672
A
ARG
673
n
189
ARG
673
A
ASP
674
n
190
ASP
674
A
ILE
675
n
191
ILE
675
A
TYR
676
n
192
TYR
676
A
SEP
677
n
193
SEP
677
A
THR
678
n
194
THR
678
A
ASP
679
n
195
ASP
679
A
TYR
680
n
196
TYR
680
A
TYR
681
n
197
TYR
681
A
ARG
682
n
198
ARG
682
A
VAL
683
n
199
VAL
683
A
n
200
684
A
n
201
685
A
n
202
686
A
THR
687
n
203
THR
687
A
MET
688
n
204
MET
688
A
LEU
689
n
205
LEU
689
A
PRO
690
n
206
PRO
690
A
ILE
691
n
207
ILE
691
A
ARG
692
n
208
ARG
692
A
TRP
693
n
209
TRP
693
A
MET
694
n
210
MET
694
A
PRO
695
n
211
PRO
695
A
PRO
696
n
212
PRO
696
A
GLU
697
n
213
GLU
697
A
SER
698
n
214
SER
698
A
ILE
699
n
215
ILE
699
A
LEU
700
n
216
LEU
700
A
TYR
701
n
217
TYR
701
A
ARG
702
n
218
ARG
702
A
LYS
703
n
219
LYS
703
A
PHE
704
n
220
PHE
704
A
THR
705
n
221
THR
705
A
THR
706
n
222
THR
706
A
GLU
707
n
223
GLU
707
A
SER
708
n
224
SER
708
A
ASP
709
n
225
ASP
709
A
VAL
710
n
226
VAL
710
A
TRP
711
n
227
TRP
711
A
SER
712
n
228
SER
712
A
PHE
713
n
229
PHE
713
A
GLY
714
n
230
GLY
714
A
VAL
715
n
231
VAL
715
A
VAL
716
n
232
VAL
716
A
LEU
717
n
233
LEU
717
A
TRP
718
n
234
TRP
718
A
GLU
719
n
235
GLU
719
A
ILE
720
n
236
ILE
720
A
PHE
721
n
237
PHE
721
A
THR
722
n
238
THR
722
A
TYR
723
n
239
TYR
723
A
GLY
724
n
240
GLY
724
A
LYS
725
n
241
LYS
725
A
GLN
726
n
242
GLN
726
A
PRO
727
n
243
PRO
727
A
TRP
728
n
244
TRP
728
A
TYR
729
n
245
TYR
729
A
GLN
730
n
246
GLN
730
A
LEU
731
n
247
LEU
731
A
SER
732
n
248
SER
732
A
ASN
733
n
249
ASN
733
A
THR
734
n
250
THR
734
A
GLU
735
n
251
GLU
735
A
ALA
736
n
252
ALA
736
A
ILE
737
n
253
ILE
737
A
ASP
738
n
254
ASP
738
A
CYS
739
n
255
CYS
739
A
ILE
740
n
256
ILE
740
A
THR
741
n
257
THR
741
A
GLN
742
n
258
GLN
742
A
GLY
743
n
259
GLY
743
A
ARG
744
n
260
ARG
744
A
GLU
745
n
261
GLU
745
A
LEU
746
n
262
LEU
746
A
GLU
747
n
263
GLU
747
A
ARG
748
n
264
ARG
748
A
PRO
749
n
265
PRO
749
A
ARG
750
n
266
ARG
750
A
ALA
751
n
267
ALA
751
A
CYS
752
n
268
CYS
752
A
PRO
753
n
269
PRO
753
A
PRO
754
n
270
PRO
754
A
GLU
755
n
271
GLU
755
A
VAL
756
n
272
VAL
756
A
TYR
757
n
273
TYR
757
A
ALA
758
n
274
ALA
758
A
ILE
759
n
275
ILE
759
A
MET
760
n
276
MET
760
A
ARG
761
n
277
ARG
761
A
GLY
762
n
278
GLY
762
A
CYS
763
n
279
CYS
763
A
TRP
764
n
280
TRP
764
A
GLN
765
n
281
GLN
765
A
ARG
766
n
282
ARG
766
A
GLU
767
n
283
GLU
767
A
PRO
768
n
284
PRO
768
A
GLN
769
n
285
GLN
769
A
GLN
770
n
286
GLN
770
A
ARG
771
n
287
ARG
771
A
HIS
772
n
288
HIS
772
A
SER
773
n
289
SER
773
A
ILE
774
n
290
ILE
774
A
LYS
775
n
291
LYS
775
A
ASP
776
n
292
ASP
776
A
VAL
777
n
293
VAL
777
A
HIS
778
n
294
HIS
778
A
ALA
779
n
295
ALA
779
A
ARG
780
n
296
ARG
780
A
LEU
781
n
297
LEU
781
A
GLN
782
n
298
GLN
782
A
ALA
783
n
299
ALA
783
A
LEU
784
n
300
LEU
784
A
ALA
785
n
301
ALA
785
A
GLN
786
n
302
GLN
786
A
ALA
787
n
303
ALA
787
A
PRO
788
n
304
PRO
788
A
PRO
789
n
305
PRO
789
A
VAL
790
n
306
VAL
790
A
TYR
791
n
307
TYR
791
A
LEU
792
n
308
LEU
792
A
ASP
793
n
309
ASP
793
A
VAL
794
n
310
VAL
794
A
LEU
795
n
311
LEU
795
A
author_and_software_defined_assembly
PISA
1
monomeric
homology
A
SEP
677
modified residue
A
SEP
193
SER
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
TRP
514
A
N
TRP
30
A
O
LEU
526
A
O
LEU
42
A
N
PHE
525
A
N
PHE
41
A
O
VAL
543
A
O
VAL
59
A
N
ALA
542
A
N
ALA
58
A
O
PHE
589
A
O
PHE
105
A
O
VAL
588
A
O
VAL
104
A
N
PHE
576
A
N
PHE
92
A
N
GLY
595
A
N
GLY
111
A
O
VAL
658
A
O
VAL
174
A
N
LEU
657
A
N
LEU
173
A
O
LYS
665
A
O
LYS
181
1
A
HOH
950
C
HOH
1
A
GLY
485
A
GLY
1
1
Y
1
A
LEU
486
A
LEU
2
1
Y
1
A
GLN
487
A
GLN
3
1
Y
1
A
GLY
488
A
GLY
4
1
Y
1
A
HIS
489
A
HIS
5
1
Y
1
A
ILE
490
A
ILE
6
1
Y
1
A
ILE
491
A
ILE
7
1
Y
1
A
GLU
492
A
GLU
8
1
Y
1
A
ASN
493
A
ASN
9
1
Y
1
A
PRO
494
A
PRO
10
1
Y
1
A
GLN
495
A
GLN
11
1
Y
1
A
TYR
496
A
TYR
12
1
Y
1
A
PHE
497
A
PHE
13
1
Y
1
A
SER
498
A
SER
14
1
Y
1
A
ASP
499
A
ASP
15
1
Y
1
A
ALA
549
A
ALA
65
1
Y
1
A
SER
550
A
SER
66
1
Y
1
A
GLU
551
A
GLU
67
1
Y
1
A
GLY
684
A
GLY
200
1
Y
1
A
GLY
685
A
GLY
201
1
Y
1
A
ARG
686
A
ARG
202
1
Y
1
A
LYS
609
-131.75
-158.51
1
A
ARG
649
80.90
-7.13
1
A
ASP
650
-151.04
42.14
1
A
TYR
676
-113.68
52.27
44.938
0.31
0.15
-0.00
0.31
-0.00
-0.99
0.953
0.936
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.26029
0.21688
0.22008
2.03
45.0
1815
21335
7.8
98.69
5.331
0.141
RANDOM
1
THROUGHOUT
MOLECULAR REPLACEMENT
0.203
0.182
0.80
0.80
1.20
2.03
76.44
57
2419
33
0
2329
0.008
0.019
2375
0.001
0.020
2245
1.293
1.971
3237
2.578
3.000
5126
5.226
5.000
295
34.207
23.030
99
12.265
15.000
372
16.173
15.000
15
0.072
0.200
353
0.004
0.021
2725
0.004
0.020
565
4.738
5.884
1177
4.737
5.882
1176
5.716
9.905
1473
5.715
9.909
1474
5.814
6.427
1196
5.811
6.428
1197
7.297
10.617
1764
8.244
26.542
2641
8.241
26.528
2631
0.388
0.317
2.083
151
1590
20
99.49
2.03
76.44
6PL1
23189
0.0
0.032
1
22.51
3.6
97.4
0.4410
2.03
2.27
1
3.6
95.1
data reduction
XDS
data scaling
XSCALE
refinement
REFMAC
5.8.0049
N
High affinity nerve growth factor receptor (E.C.2.7.10.1)
TRK-A IN COMPLEX WITH LIGAND 1B
1
N
N
2
N
N
3
N
N
A
LYS
506
A
LYS
22
HELX_P
A
ARG
508
A
ARG
24
5
AA1
3
A
ALA
553
A
ALA
69
HELX_P
A
LEU
567
A
LEU
83
1
AA2
15
A
LEU
597
A
LEU
113
HELX_P
A
HIS
604
A
HIS
120
1
AA3
8
A
LYS
609
A
LYS
125
HELX_P
A
GLY
613
A
GLY
129
5
AA4
5
A
GLY
623
A
GLY
139
HELX_P
A
LEU
644
A
LEU
160
1
AA5
22
A
ALA
652
A
ALA
168
HELX_P
A
ARG
654
A
ARG
170
5
AA6
3
A
GLN
660
A
GLN
176
HELX_P
A
LEU
662
A
LEU
178
5
AA7
3
A
MET
671
A
MET
187
HELX_P
A
TYR
676
A
TYR
192
1
AA8
6
A
SEP
677
A
SEP
193
HELX_P
A
TYR
680
A
TYR
196
5
AA9
4
A
PRO
690
A
PRO
206
HELX_P
A
MET
694
A
MET
210
5
AB1
5
A
PRO
695
A
PRO
211
HELX_P
A
ARG
702
A
ARG
218
1
AB2
8
A
THR
705
A
THR
221
HELX_P
A
THR
722
A
THR
238
1
AB3
18
A
SER
732
A
SER
248
HELX_P
A
GLN
742
A
GLN
258
1
AB4
11
A
PRO
753
A
PRO
269
HELX_P
A
TRP
764
A
TRP
280
1
AB5
12
A
GLU
767
A
GLU
283
HELX_P
A
ARG
771
A
ARG
287
5
AB6
5
A
SER
773
A
SER
289
HELX_P
A
GLN
786
A
GLN
302
1
AB7
14
A
PRO
788
A
PRO
304
HELX_P
A
ASP
793
A
ASP
309
1
AB8
6
covale
1.323
both
A
TYR
676
A
C
TYR
192
1_555
A
SEP
677
A
N
SEP
193
1_555
covale
1.334
both
A
SEP
677
A
C
SEP
193
1_555
A
THR
678
A
N
THR
194
1_555
TRANSFERASE
TRK-A KINASE DOMAIN HIGH AFFINITY NERVE GROWTH FACTOR RECEPTOR, TRANSFERASE
A
ARG
583
A
ARG
99
1
A
PRO
584
A
PRO
100
0.21
NTRK1_HUMAN
UNP
1
387
P04629
P04629-4
GLQGHIIENPQYFSDACVHHIKRRDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELL
TMLQHQHIVRFFGVCTEGRPLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAGL
HFVHRDLATRNCLVGQGLVVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYG
KQPWYQLSNTEAIDCITQGRELERPRACPPEVYAIMRGCWQREPQQRHSIKDVHARLQALAQAPPVYLDVL
387
697
6PL1
485
795
P04629
A
1
1
311
5
3
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
ILE
510
A
ILE
26
A
GLU
518
A
GLU
34
A
GLY
522
A
GLY
38
A
HIS
530
A
HIS
46
A
LYS
538
A
LYS
54
A
LEU
546
A
LEU
62
A
LEU
586
A
LEU
102
A
GLU
590
A
GLU
106
A
PHE
575
A
PHE
91
A
CYS
579
A
CYS
95
A
GLY
595
A
GLY
111
A
ASP
596
A
ASP
112
A
CYS
656
A
CYS
172
A
VAL
658
A
VAL
174
A
VAL
664
A
VAL
180
A
ILE
666
A
ILE
182
binding site for residue OOJ A 801
A
OOJ
801
Software
17
A
ALA
542
A
ALA
58
17
1_555
A
LYS
544
A
LYS
60
17
1_555
A
GLU
560
A
GLU
76
17
1_555
A
LEU
567
A
LEU
83
17
1_555
A
ILE
572
A
ILE
88
17
1_555
A
PHE
589
A
PHE
105
17
1_555
A
GLU
590
A
GLU
106
17
1_555
A
TYR
591
A
TYR
107
17
1_555
A
MET
592
A
MET
108
17
1_555
A
LEU
641
A
LEU
157
17
1_555
A
PHE
646
A
PHE
162
17
1_555
A
HIS
648
A
HIS
164
17
1_555
A
LEU
657
A
LEU
173
17
1_555
A
ILE
666
A
ILE
182
17
1_555
A
GLY
667
A
GLY
183
17
1_555
A
ASP
668
A
ASP
184
17
1_555
A
PHE
669
A
PHE
185
17
1_555
151
P 31 1 2