0.027704
0.000000
0.000000
0.000000
0.017230
0.000000
0.000000
0.000000
0.016021
0.00000
0.00000
0.00000
Manzoni, F.
Verteramo, M.L.
Oksanen, E.
Nilsson, U.J.
Logan, D.T.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.000
90.000
90.000
36.096
58.037
62.420
130763.880
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C25 H26 F2 N6 O5 S
560.573
(2~{S},3~{R},4~{S},5~{R},6~{R})-4-[4-(3-fluorophenyl)-1,2,3-triazol-1-yl]-2-[(2~{R})-3-[4-(3-fluorophenyl)-1,2,3-triazol-1-yl]-2-oxidanyl-propyl]sulfanyl-6-(hydroxymethyl)oxane-3,5-diol
non-polymer
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
Y
183
N
C
Y
184
N
C
Y
185
N
C
Y
186
N
C
Y
187
N
C
Y
188
N
C
N
189
R
C
N
190
S
C
N
191
R
C
N
192
N
C
Y
193
N
C
Y
194
N
C
Y
195
N
C
Y
196
N
C
Y
197
N
C
N
198
R
C
N
199
S
C
N
200
N
C
N
201
R
C
N
202
N
C
Y
203
N
C
Y
204
N
C
Y
205
N
C
Y
206
N
C
Y
207
N
C
N
208
N
F
N
209
N
F
Y
210
N
N
Y
211
N
N
Y
212
N
N
Y
213
N
N
Y
214
N
N
Y
215
N
N
N
216
N
O
N
217
N
O
N
218
N
O
N
219
N
O
N
220
N
O
N
221
N
S
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
N
N
249
S
C
N
250
N
C
N
251
N
O
N
252
N
C
N
253
N
C
N
254
N
C
N
255
N
C
N
256
N
O
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
N
N
271
S
C
N
272
N
C
N
273
N
O
N
274
N
C
N
275
N
C
N
276
N
C
N
277
N
C
N
278
N
N
N
279
N
O
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
N
N
296
S
C
N
297
N
C
N
298
N
O
N
299
N
C
N
300
N
C
N
301
N
S
N
302
N
C
N
303
N
O
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
N
N
316
S
C
N
317
N
C
N
318
N
O
N
319
N
C
Y
320
N
C
Y
321
N
C
Y
322
N
C
Y
323
N
C
Y
324
N
C
Y
325
N
C
N
326
N
O
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
N
N
339
S
C
N
340
N
C
N
341
N
O
N
342
N
C
N
343
N
C
N
344
N
C
N
345
N
O
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
N
N
356
S
C
N
357
N
C
N
358
N
O
N
359
N
C
N
360
N
O
N
361
N
O
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
N
N
370
S
C
N
371
N
C
N
372
N
O
N
373
R
C
N
374
N
O
N
375
N
C
N
376
N
O
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
N
N
387
S
C
N
388
N
C
N
389
N
O
N
390
N
C
Y
391
N
C
Y
392
N
C
Y
393
N
C
Y
394
N
N
Y
395
N
C
Y
396
N
C
Y
397
N
C
Y
398
N
C
Y
399
N
C
N
400
N
O
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
N
N
414
S
C
N
415
N
C
N
416
N
O
N
417
N
C
Y
418
N
C
Y
419
N
C
Y
420
N
C
Y
421
N
C
Y
422
N
C
Y
423
N
C
N
424
N
O
N
425
N
O
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
N
N
438
S
C
N
439
N
C
N
440
N
O
N
441
N
C
N
442
N
C
N
443
N
C
N
444
N
O
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
H
N
452
N
H
N
453
N
H
N
454
N
H
N
455
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
Y
173
N
doub
Y
174
N
sing
Y
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
Y
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
Y
190
N
doub
N
191
N
sing
Y
192
N
doub
Y
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
Y
197
N
sing
N
198
N
sing
Y
199
N
doub
Y
200
N
sing
Y
201
N
doub
Y
202
N
sing
Y
203
N
sing
Y
204
N
doub
Y
205
N
doub
Y
206
N
sing
N
207
N
sing
N
208
N
sing
Y
209
N
doub
Y
210
N
sing
Y
211
N
sing
Y
212
N
doub
N
213
N
sing
Y
214
N
doub
Y
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
doub
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
doub
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
doub
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
doub
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
Y
317
N
doub
Y
318
N
sing
Y
319
N
sing
N
320
N
sing
Y
321
N
doub
N
322
N
sing
Y
323
N
doub
N
324
N
sing
Y
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
doub
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
doub
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
doub
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
doub
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
Y
386
N
doub
Y
387
N
sing
Y
388
N
sing
N
389
N
sing
Y
390
N
doub
Y
391
N
sing
Y
392
N
sing
N
393
N
sing
Y
394
N
sing
Y
395
N
doub
N
396
N
sing
Y
397
N
doub
N
398
N
sing
Y
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
doub
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
Y
414
N
doub
Y
415
N
sing
Y
416
N
sing
N
417
N
sing
Y
418
N
doub
N
419
N
sing
Y
420
N
doub
N
421
N
sing
Y
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
doub
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
US
J. Am. Chem. Soc.
JACSAT
1520-5126
141
2012
2026
10.1021/jacs.8b11099
30618244
Interplay between Conformational Entropy and Solvation Entropy in Protein-Ligand Binding.
2019
10.2210/pdb6qgf/pdb
pdb_00006qgf
100
1
N
CCD
2014-06-27
MARMOSAIC 225 mm CCD
SINGLE WAVELENGTH
M
x-ray
1
1.0000
1.0
I911-3
MAX II
1.0000
SYNCHROTRON
MAX II BEAMLINE I911-3
15701.049
Galectin-3
1
man
polymer
560.573
(2~{S},3~{R},4~{S},5~{R},6~{R})-4-[4-(3-fluorophenyl)-1,2,3-triazol-1-yl]-2-[(2~{R})-3-[4-(3-fluorophenyl)-1,2,3-triazol-1-yl]-2-oxidanyl-propyl]sulfanyl-6-(hydroxymethyl)oxane-3,5-diol
1
syn
non-polymer
18.015
water
210
nat
water
Gal-3,35 kDa lectin,Carbohydrate-binding protein 35,CBP 35,Galactose-specific lectin 3,Galactoside-binding protein,GALBP,IgE-binding protein,L-31,Laminin-binding protein,Lectin L-29,Mac-2 antigen
no
no
PLIVPYNLPLPGGVVPRMLITILGTVKPNANRIALDFQRGNDVAFHFNPRFNENNRRVIVCNTKLDNNWGREERQSVFPF
ESGKPFKIQVLVEPDHFKVAVNDAHLLQYNHRVKKLNEISKLGISGDIDLTSASYTMI
PLIVPYNLPLPGGVVPRMLITILGTVKPNANRIALDFQRGNDVAFHFNPRFNENNRRVIVCNTKLDNNWGREERQSVFPF
ESGKPFKIQVLVEPDHFKVAVNDAHLLQYNHRVKKLNEISKLGISGDIDLTSASYTMI
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Human
sample
1
138
LGALS3, MAC2
9606
Homo sapiens
562
Escherichia coli
Biological sequence
1
2.08
40.92
VAPOR DIFFUSION
7.5
28% (w/v) PEG 4000, Tris-HCl pH 7.5, 0.4 M NaSCN, 15 mM beta-mercaptoethanol. Drop volume was 2 microlitres and the protein solution:reservoir ratio was varied between 0.5:1, 1:1, and 2:1. The crystals were soaked in 10 mM ligand for 7 hours.
295
citation
citation_author
pdbx_database_proc
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
repository
Initial release
Data collection
Database references
Data collection
Database references
Refinement description
1
0
2019-01-23
1
1
2019-02-13
1
2
2024-01-24
_citation.journal_volume
_citation.page_first
_citation.page_last
_citation_author.name
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
Sweden
Knut and Alice Wallenberg Foundation
KAW 2013.022
N
PDBE
Y
PDBE
2019-01-11
REL
REL
1
A
O
HOH
609
6.20
1
A
O
HOH
610
6.53
J0T
J0T
SUBJECT OF INVESTIGATION
J0T
(2~{S},3~{R},4~{S},5~{R},6~{R})-4-[4-(3-fluorophenyl)-1,2,3-triazol-1-yl]-2-[(2~{R})-3-[4-(3-fluorophenyl)-1,2,3-triazol-1-yl]-2-oxidanyl-propyl]sulfanyl-6-(hydroxymethyl)oxane-3,5-diol
HOH
water
3ZSJ
PDB
experimental model
6QA
1
2
J0T
J0T
301
A
HOH
87
3
HOH
HOH
401
A
HOH
92
3
HOH
HOH
402
A
HOH
149
3
HOH
HOH
403
A
HOH
95
3
HOH
HOH
404
A
HOH
94
3
HOH
HOH
405
A
HOH
86
3
HOH
HOH
406
A
HOH
2
3
HOH
HOH
407
A
HOH
126
3
HOH
HOH
408
A
HOH
217
3
HOH
HOH
409
A
HOH
144
3
HOH
HOH
410
A
HOH
193
3
HOH
HOH
411
A
HOH
176
3
HOH
HOH
412
A
HOH
160
3
HOH
HOH
413
A
HOH
91
3
HOH
HOH
414
A
HOH
121
3
HOH
HOH
415
A
HOH
10
3
HOH
HOH
416
A
HOH
214
3
HOH
HOH
417
A
HOH
36
3
HOH
HOH
418
A
HOH
34
3
HOH
HOH
419
A
HOH
166
3
HOH
HOH
420
A
HOH
191
3
HOH
HOH
421
A
HOH
48
3
HOH
HOH
422
A
HOH
80
3
HOH
HOH
423
A
HOH
61
3
HOH
HOH
424
A
HOH
35
3
HOH
HOH
425
A
HOH
113
3
HOH
HOH
426
A
HOH
16
3
HOH
HOH
427
A
HOH
197
3
HOH
HOH
428
A
HOH
8
3
HOH
HOH
429
A
HOH
14
3
HOH
HOH
430
A
HOH
146
3
HOH
HOH
431
A
HOH
31
3
HOH
HOH
432
A
HOH
63
3
HOH
HOH
433
A
HOH
55
3
HOH
HOH
434
A
HOH
7
3
HOH
HOH
435
A
HOH
17
3
HOH
HOH
436
A
HOH
56
3
HOH
HOH
437
A
HOH
161
3
HOH
HOH
438
A
HOH
138
3
HOH
HOH
439
A
HOH
11
3
HOH
HOH
440
A
HOH
3
3
HOH
HOH
441
A
HOH
66
3
HOH
HOH
442
A
HOH
173
3
HOH
HOH
443
A
HOH
118
3
HOH
HOH
444
A
HOH
153
3
HOH
HOH
445
A
HOH
41
3
HOH
HOH
446
A
HOH
6
3
HOH
HOH
447
A
HOH
33
3
HOH
HOH
448
A
HOH
112
3
HOH
HOH
449
A
HOH
68
3
HOH
HOH
450
A
HOH
12
3
HOH
HOH
451
A
HOH
145
3
HOH
HOH
452
A
HOH
117
3
HOH
HOH
453
A
HOH
13
3
HOH
HOH
454
A
HOH
199
3
HOH
HOH
455
A
HOH
172
3
HOH
HOH
456
A
HOH
23
3
HOH
HOH
457
A
HOH
183
3
HOH
HOH
458
A
HOH
174
3
HOH
HOH
459
A
HOH
125
3
HOH
HOH
460
A
HOH
26
3
HOH
HOH
461
A
HOH
158
3
HOH
HOH
462
A
HOH
119
3
HOH
HOH
463
A
HOH
27
3
HOH
HOH
464
A
HOH
123
3
HOH
HOH
465
A
HOH
75
3
HOH
HOH
466
A
HOH
124
3
HOH
HOH
467
A
HOH
202
3
HOH
HOH
468
A
HOH
83
3
HOH
HOH
469
A
HOH
198
3
HOH
HOH
470
A
HOH
25
3
HOH
HOH
471
A
HOH
135
3
HOH
HOH
472
A
HOH
206
3
HOH
HOH
473
A
HOH
142
3
HOH
HOH
474
A
HOH
70
3
HOH
HOH
475
A
HOH
120
3
HOH
HOH
476
A
HOH
107
3
HOH
HOH
477
A
HOH
90
3
HOH
HOH
478
A
HOH
39
3
HOH
HOH
479
A
HOH
208
3
HOH
HOH
480
A
HOH
141
3
HOH
HOH
481
A
HOH
152
3
HOH
HOH
482
A
HOH
58
3
HOH
HOH
483
A
HOH
64
3
HOH
HOH
484
A
HOH
179
3
HOH
HOH
485
A
HOH
129
3
HOH
HOH
486
A
HOH
110
3
HOH
HOH
487
A
HOH
62
3
HOH
HOH
488
A
HOH
189
3
HOH
HOH
489
A
HOH
50
3
HOH
HOH
490
A
HOH
114
3
HOH
HOH
491
A
HOH
139
3
HOH
HOH
492
A
HOH
106
3
HOH
HOH
493
A
HOH
15
3
HOH
HOH
494
A
HOH
130
3
HOH
HOH
495
A
HOH
46
3
HOH
HOH
496
A
HOH
30
3
HOH
HOH
497
A
HOH
170
3
HOH
HOH
498
A
HOH
37
3
HOH
HOH
499
A
HOH
38
3
HOH
HOH
500
A
HOH
203
3
HOH
HOH
501
A
HOH
43
3
HOH
HOH
502
A
HOH
19
3
HOH
HOH
503
A
HOH
21
3
HOH
HOH
504
A
HOH
69
3
HOH
HOH
505
A
HOH
205
3
HOH
HOH
506
A
HOH
52
3
HOH
HOH
507
A
HOH
22
3
HOH
HOH
508
A
HOH
148
3
HOH
HOH
509
A
HOH
53
3
HOH
HOH
510
A
HOH
18
3
HOH
HOH
511
A
HOH
169
3
HOH
HOH
512
A
HOH
57
3
HOH
HOH
513
A
HOH
20
3
HOH
HOH
514
A
HOH
45
3
HOH
HOH
515
A
HOH
1
3
HOH
HOH
516
A
HOH
177
3
HOH
HOH
517
A
HOH
167
3
HOH
HOH
518
A
HOH
44
3
HOH
HOH
519
A
HOH
175
3
HOH
HOH
520
A
HOH
47
3
HOH
HOH
521
A
HOH
150
3
HOH
HOH
522
A
HOH
194
3
HOH
HOH
523
A
HOH
9
3
HOH
HOH
524
A
HOH
28
3
HOH
HOH
525
A
HOH
105
3
HOH
HOH
526
A
HOH
108
3
HOH
HOH
527
A
HOH
29
3
HOH
HOH
528
A
HOH
196
3
HOH
HOH
529
A
HOH
40
3
HOH
HOH
530
A
HOH
71
3
HOH
HOH
531
A
HOH
115
3
HOH
HOH
532
A
HOH
164
3
HOH
HOH
533
A
HOH
59
3
HOH
HOH
534
A
HOH
200
3
HOH
HOH
535
A
HOH
187
3
HOH
HOH
536
A
HOH
42
3
HOH
HOH
537
A
HOH
51
3
HOH
HOH
538
A
HOH
151
3
HOH
HOH
539
A
HOH
24
3
HOH
HOH
540
A
HOH
128
3
HOH
HOH
541
A
HOH
171
3
HOH
HOH
542
A
HOH
49
3
HOH
HOH
543
A
HOH
60
3
HOH
HOH
544
A
HOH
165
3
HOH
HOH
545
A
HOH
182
3
HOH
HOH
546
A
HOH
156
3
HOH
HOH
547
A
HOH
143
3
HOH
HOH
548
A
HOH
140
3
HOH
HOH
549
A
HOH
168
3
HOH
HOH
550
A
HOH
96
3
HOH
HOH
551
A
HOH
131
3
HOH
HOH
552
A
HOH
88
3
HOH
HOH
553
A
HOH
184
3
HOH
HOH
554
A
HOH
147
3
HOH
HOH
555
A
HOH
134
3
HOH
HOH
556
A
HOH
98
3
HOH
HOH
557
A
HOH
133
3
HOH
HOH
558
A
HOH
185
3
HOH
HOH
559
A
HOH
127
3
HOH
HOH
560
A
HOH
81
3
HOH
HOH
561
A
HOH
67
3
HOH
HOH
562
A
HOH
163
3
HOH
HOH
563
A
HOH
74
3
HOH
HOH
564
A
HOH
104
3
HOH
HOH
565
A
HOH
132
3
HOH
HOH
566
A
HOH
100
3
HOH
HOH
567
A
HOH
4
3
HOH
HOH
568
A
HOH
178
3
HOH
HOH
569
A
HOH
111
3
HOH
HOH
570
A
HOH
188
3
HOH
HOH
571
A
HOH
216
3
HOH
HOH
572
A
HOH
77
3
HOH
HOH
573
A
HOH
213
3
HOH
HOH
574
A
HOH
32
3
HOH
HOH
575
A
HOH
116
3
HOH
HOH
576
A
HOH
82
3
HOH
HOH
577
A
HOH
122
3
HOH
HOH
578
A
HOH
136
3
HOH
HOH
579
A
HOH
101
3
HOH
HOH
580
A
HOH
207
3
HOH
HOH
581
A
HOH
180
3
HOH
HOH
582
A
HOH
154
3
HOH
HOH
583
A
HOH
73
3
HOH
HOH
584
A
HOH
192
3
HOH
HOH
585
A
HOH
155
3
HOH
HOH
586
A
HOH
219
3
HOH
HOH
587
A
HOH
186
3
HOH
HOH
588
A
HOH
157
3
HOH
HOH
589
A
HOH
93
3
HOH
HOH
590
A
HOH
54
3
HOH
HOH
591
A
HOH
181
3
HOH
HOH
592
A
HOH
212
3
HOH
HOH
593
A
HOH
218
3
HOH
HOH
594
A
HOH
72
3
HOH
HOH
595
A
HOH
190
3
HOH
HOH
596
A
HOH
84
3
HOH
HOH
597
A
HOH
99
3
HOH
HOH
598
A
HOH
215
3
HOH
HOH
599
A
HOH
137
3
HOH
HOH
600
A
HOH
201
3
HOH
HOH
601
A
HOH
162
3
HOH
HOH
602
A
HOH
65
3
HOH
HOH
603
A
HOH
159
3
HOH
HOH
604
A
HOH
195
3
HOH
HOH
605
A
HOH
102
3
HOH
HOH
606
A
HOH
5
3
HOH
HOH
607
A
HOH
209
3
HOH
HOH
608
A
HOH
79
3
HOH
HOH
609
A
HOH
204
3
HOH
HOH
610
A
PRO
113
n
1
PRO
113
A
LEU
114
n
2
LEU
114
A
ILE
115
n
3
ILE
115
A
VAL
116
n
4
VAL
116
A
PRO
117
n
5
PRO
117
A
TYR
118
n
6
TYR
118
A
ASN
119
n
7
ASN
119
A
LEU
120
n
8
LEU
120
A
PRO
121
n
9
PRO
121
A
LEU
122
n
10
LEU
122
A
PRO
123
n
11
PRO
123
A
GLY
124
n
12
GLY
124
A
GLY
125
n
13
GLY
125
A
VAL
126
n
14
VAL
126
A
VAL
127
n
15
VAL
127
A
PRO
128
n
16
PRO
128
A
ARG
129
n
17
ARG
129
A
MET
130
n
18
MET
130
A
LEU
131
n
19
LEU
131
A
ILE
132
n
20
ILE
132
A
THR
133
n
21
THR
133
A
ILE
134
n
22
ILE
134
A
LEU
135
n
23
LEU
135
A
GLY
136
n
24
GLY
136
A
THR
137
n
25
THR
137
A
VAL
138
n
26
VAL
138
A
LYS
139
n
27
LYS
139
A
PRO
140
n
28
PRO
140
A
ASN
141
n
29
ASN
141
A
ALA
142
n
30
ALA
142
A
ASN
143
n
31
ASN
143
A
ARG
144
n
32
ARG
144
A
ILE
145
n
33
ILE
145
A
ALA
146
n
34
ALA
146
A
LEU
147
n
35
LEU
147
A
ASP
148
n
36
ASP
148
A
PHE
149
n
37
PHE
149
A
GLN
150
n
38
GLN
150
A
ARG
151
n
39
ARG
151
A
GLY
152
n
40
GLY
152
A
ASN
153
n
41
ASN
153
A
ASP
154
n
42
ASP
154
A
VAL
155
n
43
VAL
155
A
ALA
156
n
44
ALA
156
A
PHE
157
n
45
PHE
157
A
HIS
158
n
46
HIS
158
A
PHE
159
n
47
PHE
159
A
ASN
160
n
48
ASN
160
A
PRO
161
n
49
PRO
161
A
ARG
162
n
50
ARG
162
A
PHE
163
n
51
PHE
163
A
ASN
164
n
52
ASN
164
A
GLU
165
n
53
GLU
165
A
ASN
166
n
54
ASN
166
A
ASN
167
n
55
ASN
167
A
ARG
168
n
56
ARG
168
A
ARG
169
n
57
ARG
169
A
VAL
170
n
58
VAL
170
A
ILE
171
n
59
ILE
171
A
VAL
172
n
60
VAL
172
A
CYS
173
n
61
CYS
173
A
ASN
174
n
62
ASN
174
A
THR
175
n
63
THR
175
A
LYS
176
n
64
LYS
176
A
LEU
177
n
65
LEU
177
A
ASP
178
n
66
ASP
178
A
ASN
179
n
67
ASN
179
A
ASN
180
n
68
ASN
180
A
TRP
181
n
69
TRP
181
A
GLY
182
n
70
GLY
182
A
ARG
183
n
71
ARG
183
A
GLU
184
n
72
GLU
184
A
GLU
185
n
73
GLU
185
A
ARG
186
n
74
ARG
186
A
GLN
187
n
75
GLN
187
A
SER
188
n
76
SER
188
A
VAL
189
n
77
VAL
189
A
PHE
190
n
78
PHE
190
A
PRO
191
n
79
PRO
191
A
PHE
192
n
80
PHE
192
A
GLU
193
n
81
GLU
193
A
SER
194
n
82
SER
194
A
GLY
195
n
83
GLY
195
A
LYS
196
n
84
LYS
196
A
PRO
197
n
85
PRO
197
A
PHE
198
n
86
PHE
198
A
LYS
199
n
87
LYS
199
A
ILE
200
n
88
ILE
200
A
GLN
201
n
89
GLN
201
A
VAL
202
n
90
VAL
202
A
LEU
203
n
91
LEU
203
A
VAL
204
n
92
VAL
204
A
GLU
205
n
93
GLU
205
A
PRO
206
n
94
PRO
206
A
ASP
207
n
95
ASP
207
A
HIS
208
n
96
HIS
208
A
PHE
209
n
97
PHE
209
A
LYS
210
n
98
LYS
210
A
VAL
211
n
99
VAL
211
A
ALA
212
n
100
ALA
212
A
VAL
213
n
101
VAL
213
A
ASN
214
n
102
ASN
214
A
ASP
215
n
103
ASP
215
A
ALA
216
n
104
ALA
216
A
HIS
217
n
105
HIS
217
A
LEU
218
n
106
LEU
218
A
LEU
219
n
107
LEU
219
A
GLN
220
n
108
GLN
220
A
TYR
221
n
109
TYR
221
A
ASN
222
n
110
ASN
222
A
HIS
223
n
111
HIS
223
A
ARG
224
n
112
ARG
224
A
VAL
225
n
113
VAL
225
A
LYS
226
n
114
LYS
226
A
LYS
227
n
115
LYS
227
A
LEU
228
n
116
LEU
228
A
ASN
229
n
117
ASN
229
A
GLU
230
n
118
GLU
230
A
ILE
231
n
119
ILE
231
A
SER
232
n
120
SER
232
A
LYS
233
n
121
LYS
233
A
LEU
234
n
122
LEU
234
A
GLY
235
n
123
GLY
235
A
ILE
236
n
124
ILE
236
A
SER
237
n
125
SER
237
A
GLY
238
n
126
GLY
238
A
ASP
239
n
127
ASP
239
A
ILE
240
n
128
ILE
240
A
ASP
241
n
129
ASP
241
A
LEU
242
n
130
LEU
242
A
THR
243
n
131
THR
243
A
SER
244
n
132
SER
244
A
ALA
245
n
133
ALA
245
A
SER
246
n
134
SER
246
A
TYR
247
n
135
TYR
247
A
THR
248
n
136
THR
248
A
MET
249
n
137
MET
249
A
ILE
250
n
138
ILE
250
A
author_and_software_defined_assembly
PISA
1
monomeric
none
0
0
7410
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
LEU
120
A
N
LEU
8
A
O
LEU
234
A
O
LEU
122
A
O
SER
237
A
O
SER
125
A
N
ALA
146
A
N
ALA
34
A
N
PHE
149
A
N
PHE
37
A
O
PHE
157
A
O
PHE
45
A
N
ARG
162
A
N
ARG
50
A
O
VAL
170
A
O
VAL
58
A
N
LEU
177
A
N
LEU
65
A
O
ASN
180
A
O
ASN
68
A
N
LEU
120
A
N
LEU
8
A
O
LEU
234
A
O
LEU
122
A
O
SER
237
A
O
SER
125
A
N
ALA
146
A
N
ALA
34
A
N
PHE
149
A
N
PHE
37
A
O
PHE
157
A
O
PHE
45
A
N
ARG
162
A
N
ARG
50
A
O
VAL
170
A
O
VAL
58
A
N
ILE
171
A
N
ILE
59
A
O
GLN
187
A
O
GLN
75
A
O
LEU
218
A
O
LEU
106
A
N
VAL
211
A
N
VAL
99
A
O
LYS
210
A
O
LYS
98
A
N
LEU
203
A
N
LEU
91
A
O
ILE
200
A
O
ILE
88
A
N
ILE
134
A
N
ILE
22
A
N
LEU
131
A
N
LEU
19
A
O
THR
248
A
O
THR
136
1
A
CG
PRO
113
A
CG
PRO
1
1
Y
1
A
CD
PRO
113
A
CD
PRO
1
1
Y
1
A
A
O
O
HOH
HOH
466
584
1.88
1
A
A
O
O
HOH
HOH
470
542
2.04
1
A
A
O
O
HOH
HOH
470
493
2.06
1
A
A
O
O
HOH
HOH
553
591
2.13
1
18.40
2.50
121.70
140.10
A
A
A
C
N
CA
PRO
ASN
ASN
140
141
141
B
Y
1
A
A
O
O
HOH
HOH
581
608
2.00
1_555
1_455
1
A
A
NH1
O
ARG
HOH
183
601
2.08
1_555
1_455
1
A
A
NH1
O
ARG
HOH
183
490
2.09
1_555
1_455
1
A
A
O
O
HOH
HOH
535
567
2.17
1_555
3_445
1
A
ARG
129
89.07
-4.26
1
A
ASN
164
-156.78
74.71
12.11
0.1575
0.1240
0.1257
1.34
42.50
1489
29541
5.04
97.27
0.1280
1
THROUGHOUT
1.36
MOLECULAR REPLACEMENT
14.5632
0.4000
0.8000
3ZSJ
1.34
42.50
210
1355
39
0
1106
0.0143
1260
1.4784
1729
0.1060
188
0.0101
232
16.0249
480
0.2928
0.2576
1.38
110
2453
94.26
0.2260
0.1852
1.43
116
2526
98.18
0.2104
0.1436
1.49
135
2555
98.39
0.1690
0.1248
1.55
150
2524
98.53
0.1878
0.1168
1.64
126
2571
98.11
0.1665
0.1138
1.74
128
2563
98.86
0.1638
0.1051
1.87
154
2569
99.23
0.1362
0.0923
2.06
145
2584
98.63
0.1223
0.0981
2.36
160
2548
97.83
0.1453
0.1205
2.97
151
2572
96.63
0.1408
0.1324
42.52
114
2587
91.78
8.37
1.340
42.520
6QGF
29677
0.997
0.117
0.052
0.128
1
13.500
170528
5.700
98.100
1.125
1.340
1.360
1412
0.590
0.515
1.243
1
5.300
96.300
0.037
7.320
42.520
197
0.998
0.018
0.042
1
5.000
88.800
refinement
PHENIX
1.13_2998
data scaling
Aimless
0.5.8
data extraction
PDB_EXTRACT
3.24
data reduction
XDS
phasing
PHENIX
1.13_2998
N
Galectin-3C in complex with a pair of enantiomeric ligands: R enantiomer
1
N
N
2
N
N
3
N
N
A
LYS
227
A
LYS
115
HELX_P
A
ILE
231
A
ILE
119
5
AA1
5
SUGAR BINDING PROTEIN
cell signalling drug design conformational entropy, SUGAR BINDING PROTEIN
A
VAL
116
A
VAL
4
1
A
PRO
117
A
PRO
5
5.03
LEG3_HUMAN
UNP
1
113
P17931
PLIVPYNLPLPGGVVPRMLITILGTVKPNANRIALDFQRGNDVAFHFNPRFNENNRRVIVCNTKLDNNWGREERQSVFPF
ESGKPFKIQVLVEPDHFKVAVNDAHLLQYNHRVKKLNEISKLGISGDIDLTSASYTMI
113
250
6QGF
113
250
P17931
A
1
1
138
6
6
5
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
TYR
118
A
TYR
6
A
PRO
121
A
PRO
9
A
LYS
233
A
LYS
121
A
GLY
238
A
GLY
126
A
ILE
145
A
ILE
33
A
ARG
151
A
ARG
39
A
ASP
154
A
ASP
42
A
GLU
165
A
GLU
53
A
ARG
168
A
ARG
56
A
LEU
177
A
LEU
65
A
ASN
180
A
ASN
68
A
TRP
181
A
TRP
69
A
TYR
118
A
TYR
6
A
PRO
121
A
PRO
9
A
LYS
233
A
LYS
121
A
GLY
238
A
GLY
126
A
ILE
145
A
ILE
33
A
ARG
151
A
ARG
39
A
ASP
154
A
ASP
42
A
GLU
165
A
GLU
53
A
ARG
168
A
ARG
56
A
LEU
177
A
LEU
65
A
GLU
185
A
GLU
73
A
GLN
187
A
GLN
75
A
ALA
216
A
ALA
104
A
ASN
222
A
ASN
110
A
HIS
208
A
HIS
96
A
VAL
213
A
VAL
101
A
PRO
197
A
PRO
85
A
VAL
204
A
VAL
92
A
MET
130
A
MET
18
A
VAL
138
A
VAL
26
A
ILE
240
A
ILE
128
A
MET
249
A
MET
137
binding site for residue J0T A 301
A
J0T
301
Software
16
A
PRO
113
A
PRO
1
16
1_455
A
ILE
115
A
ILE
3
16
1_455
A
ARG
144
A
ARG
32
16
1_555
A
ILE
145
A
ILE
33
16
1_555
A
ALA
146
A
ALA
34
16
1_555
A
HIS
158
A
HIS
46
16
1_555
A
ASN
160
A
ASN
48
16
1_555
A
ARG
162
A
ARG
50
16
1_555
A
ASN
174
A
ASN
62
16
1_555
A
GLU
184
A
GLU
72
16
1_555
A
ARG
186
A
ARG
74
16
1_555
A
SER
237
A
SER
125
16
1_555
A
HOH
428
C
HOH
16
1_555
A
HOH
484
C
HOH
16
1_555
A
HOH
496
C
HOH
16
1_555
A
HOH
498
C
HOH
16
1_555
19
P 21 21 21
P 2ac 2ab