0.028080 0.000000 0.000000 0.000000 0.007947 0.000000 0.000000 0.000000 0.005956 0.00000 0.00000 0.00000 Spahr, H. Nicholls, T.J. Larsson, N.G. Gustafsson, C.M. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 16 90.000 90.000 90.000 35.613 125.835 167.910 C10 H14 N5 O7 P 347.221 y ADENOSINE-5'-MONOPHOSPHATE RNA linking C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking Mg 2 24.305 MAGNESIUM ION non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking Zn 2 65.409 ZINC ION non-polymer US Mol.Cell MOCEFL 2168 1097-2765 76 784 796.e6 10.1016/j.molcel.2019.09.010 31588022 Dinucleotide Degradation by REXO2 Maintains Promoter Specificity in Mammalian Mitochondria. 2019 100 1 N PIXEL 2018-09-01 DECTRIS PILATUS3 6M SINGLE WAVELENGTH M x-ray 1 0.9762 1.0 ID29 ESRF 0.9762 SYNCHROTRON ESRF BEAMLINE ID29 20850.953 Oligoribonuclease, mitochondrial 3.1.-.- 2 man polymer 613.454 RNA (5'-R(P*AP*A)-3') 1 syn polymer 65.409 ZINC ION 1 syn non-polymer 24.305 MAGNESIUM ION 1 syn non-polymer 18.015 water 197 nat water RNA exonuclease 2 homolog,Small fragment nuclease no no GAMAQRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDSMSDWCKEHHGKSGLTKAVKESTIT LQQAEYEFLSFVRQQTPPGLCPLAGNSVHEDKKFLDKYMPQFMKHLHYRIIDVSTVKELCRRWYPEEYEFAPKKAASHRA LDAISESIKELQFYRNNIFK GAMAQRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDSMSDWCKEHHGKSGLTKAVKESTIT LQQAEYEFLSFVRQQTPPGLCPLAGNSVHEDKKFLDKYMPQFMKHLHYRIIDVSTVKELCRRWYPEEYEFAPKKAASHRA LDAISESIKELQFYRNNIFK A,B polypeptide(L) no no AA AA C polyribonucleotide n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Human sample 1 180 REXO2, SFN, SMFN, CGI-114 9606 Homo sapiens 562 Escherichia coli Rosetta2 plasmid Biological sequence pETM11 1 2.22 44.66 0.120 VAPOR DIFFUSION 100 mM Hepes pH 7.0, 200 mM sodium malonate, and 20 % polyethylene glycol 3350 298 citation citation_author citation repository Initial release Data collection Database references Database references 1 0 2019-10-09 1 1 2019-10-16 1 2 2019-12-18 _citation.country _citation.journal_abbrev _citation.journal_id_ASTM _citation.journal_id_CSD _citation.journal_id_ISSN _citation.pdbx_database_id_DOI _citation.pdbx_database_id_PubMed _citation.title _citation.year _citation.journal_volume _citation.page_first _citation.page_last Germany Max Planck Society Sweden Swedish Research Council Sweden Knut and Alice Wallenberg Foundation European Research Council N PDBE Y PDBE 2019-04-11 REL REL ZN ZINC ION MG MAGNESIUM ION HOH water 32630 synthetic construct sample 1 2 ZN 1 3 ZN ZN 301 A MG 2 4 MG MG 101 C HOH 88 5 HOH HOH 401 A HOH 138 5 HOH HOH 402 A HOH 128 5 HOH HOH 403 A HOH 87 5 HOH HOH 404 A HOH 7 5 HOH HOH 405 A HOH 168 5 HOH HOH 406 A HOH 10 5 HOH HOH 407 A HOH 159 5 HOH HOH 408 A HOH 81 5 HOH HOH 409 A HOH 18 5 HOH HOH 410 A HOH 171 5 HOH HOH 411 A HOH 8 5 HOH HOH 412 A HOH 35 5 HOH HOH 413 A HOH 44 5 HOH HOH 414 A HOH 111 5 HOH HOH 415 A HOH 29 5 HOH HOH 416 A HOH 57 5 HOH HOH 417 A HOH 84 5 HOH HOH 418 A HOH 42 5 HOH HOH 419 A HOH 17 5 HOH HOH 420 A HOH 69 5 HOH HOH 421 A HOH 184 5 HOH HOH 422 A HOH 2 5 HOH HOH 423 A HOH 34 5 HOH HOH 424 A HOH 113 5 HOH HOH 425 A HOH 164 5 HOH HOH 426 A HOH 22 5 HOH HOH 427 A HOH 130 5 HOH HOH 428 A HOH 14 5 HOH HOH 429 A HOH 1 5 HOH HOH 430 A HOH 40 5 HOH HOH 431 A HOH 33 5 HOH HOH 432 A HOH 91 5 HOH HOH 433 A HOH 23 5 HOH HOH 434 A HOH 31 5 HOH HOH 435 A HOH 188 5 HOH HOH 436 A HOH 86 5 HOH HOH 437 A HOH 36 5 HOH HOH 438 A HOH 110 5 HOH HOH 439 A HOH 116 5 HOH HOH 440 A HOH 97 5 HOH HOH 441 A HOH 51 5 HOH HOH 442 A HOH 193 5 HOH HOH 443 A HOH 5 5 HOH HOH 444 A HOH 93 5 HOH HOH 445 A HOH 121 5 HOH HOH 446 A HOH 43 5 HOH HOH 447 A HOH 90 5 HOH HOH 448 A HOH 100 5 HOH HOH 449 A HOH 161 5 HOH HOH 450 A HOH 140 5 HOH HOH 451 A HOH 28 5 HOH HOH 452 A HOH 124 5 HOH HOH 453 A HOH 61 5 HOH HOH 454 A HOH 139 5 HOH HOH 455 A HOH 58 5 HOH HOH 456 A HOH 55 5 HOH HOH 457 A HOH 144 5 HOH HOH 458 A HOH 194 5 HOH HOH 459 A HOH 48 5 HOH HOH 460 A HOH 94 5 HOH HOH 461 A HOH 170 5 HOH HOH 462 A HOH 125 5 HOH HOH 463 A HOH 25 5 HOH HOH 464 A HOH 65 5 HOH HOH 465 A HOH 9 5 HOH HOH 466 A HOH 24 5 HOH HOH 467 A HOH 108 5 HOH HOH 468 A HOH 72 5 HOH HOH 469 A HOH 47 5 HOH HOH 470 A HOH 102 5 HOH HOH 471 A HOH 190 5 HOH HOH 472 A HOH 13 5 HOH HOH 473 A HOH 157 5 HOH HOH 474 A HOH 54 5 HOH HOH 475 A HOH 6 5 HOH HOH 476 A HOH 83 5 HOH HOH 477 A HOH 143 5 HOH HOH 478 A HOH 15 5 HOH HOH 479 A HOH 73 5 HOH HOH 480 A HOH 119 5 HOH HOH 481 A HOH 32 5 HOH HOH 482 A HOH 74 5 HOH HOH 483 A HOH 96 5 HOH HOH 484 A HOH 52 5 HOH HOH 485 A HOH 154 5 HOH HOH 486 A HOH 131 5 HOH HOH 487 A HOH 153 5 HOH HOH 488 A HOH 192 5 HOH HOH 489 A HOH 158 5 HOH HOH 490 A HOH 68 5 HOH HOH 491 A HOH 50 5 HOH HOH 492 A HOH 30 5 HOH HOH 493 A HOH 20 5 HOH HOH 494 A HOH 64 5 HOH HOH 495 A HOH 163 5 HOH HOH 496 A HOH 19 5 HOH HOH 497 A HOH 173 5 HOH HOH 498 A HOH 3 5 HOH HOH 499 A HOH 109 5 HOH HOH 500 A HOH 77 5 HOH HOH 501 A HOH 165 5 HOH HOH 502 A HOH 112 5 HOH HOH 503 A HOH 186 5 HOH HOH 504 A HOH 141 5 HOH HOH 505 A HOH 92 5 HOH HOH 506 A HOH 75 5 HOH HOH 507 A HOH 76 5 HOH HOH 508 A HOH 49 5 HOH HOH 509 A HOH 195 5 HOH HOH 510 A HOH 191 5 HOH HOH 511 A HOH 41 5 HOH HOH 512 A HOH 181 5 HOH HOH 513 A HOH 145 5 HOH HOH 514 A HOH 151 5 HOH HOH 515 A HOH 56 5 HOH HOH 516 A HOH 182 5 HOH HOH 517 A HOH 127 5 HOH HOH 518 A HOH 189 5 HOH HOH 519 A HOH 70 5 HOH HOH 520 A HOH 95 5 HOH HOH 521 A HOH 179 5 HOH HOH 522 A HOH 162 5 HOH HOH 523 A HOH 129 5 HOH HOH 301 B HOH 4 5 HOH HOH 302 B HOH 136 5 HOH HOH 303 B HOH 133 5 HOH HOH 304 B HOH 142 5 HOH HOH 305 B HOH 12 5 HOH HOH 306 B HOH 148 5 HOH HOH 307 B HOH 21 5 HOH HOH 308 B HOH 37 5 HOH HOH 309 B HOH 89 5 HOH HOH 310 B HOH 150 5 HOH HOH 311 B HOH 26 5 HOH HOH 312 B HOH 85 5 HOH HOH 313 B HOH 80 5 HOH HOH 314 B HOH 135 5 HOH HOH 315 B HOH 107 5 HOH HOH 316 B HOH 155 5 HOH HOH 317 B HOH 114 5 HOH HOH 318 B HOH 27 5 HOH HOH 319 B HOH 134 5 HOH HOH 320 B HOH 132 5 HOH HOH 321 B HOH 122 5 HOH HOH 322 B HOH 115 5 HOH HOH 323 B HOH 196 5 HOH HOH 324 B HOH 160 5 HOH HOH 325 B HOH 137 5 HOH HOH 326 B HOH 106 5 HOH HOH 327 B HOH 187 5 HOH HOH 328 B HOH 79 5 HOH HOH 329 B HOH 146 5 HOH HOH 330 B HOH 16 5 HOH HOH 331 B HOH 98 5 HOH HOH 332 B HOH 105 5 HOH HOH 333 B HOH 197 5 HOH HOH 334 B HOH 60 5 HOH HOH 335 B HOH 62 5 HOH HOH 336 B HOH 59 5 HOH HOH 337 B HOH 156 5 HOH HOH 338 B HOH 104 5 HOH HOH 339 B HOH 99 5 HOH HOH 340 B HOH 46 5 HOH HOH 341 B HOH 175 5 HOH HOH 342 B HOH 45 5 HOH HOH 343 B HOH 67 5 HOH HOH 344 B HOH 152 5 HOH HOH 345 B HOH 82 5 HOH HOH 346 B HOH 78 5 HOH HOH 347 B HOH 120 5 HOH HOH 348 B HOH 149 5 HOH HOH 349 B HOH 66 5 HOH HOH 350 B HOH 147 5 HOH HOH 351 B HOH 38 5 HOH HOH 352 B HOH 126 5 HOH HOH 353 B HOH 101 5 HOH HOH 354 B HOH 63 5 HOH HOH 355 B HOH 176 5 HOH HOH 356 B HOH 103 5 HOH HOH 357 B HOH 123 5 HOH HOH 358 B HOH 39 5 HOH HOH 359 B HOH 118 5 HOH HOH 360 B HOH 172 5 HOH HOH 361 B HOH 174 5 HOH HOH 362 B HOH 185 5 HOH HOH 363 B HOH 183 5 HOH HOH 364 B HOH 177 5 HOH HOH 365 B HOH 169 5 HOH HOH 366 B HOH 180 5 HOH HOH 367 B HOH 53 5 HOH HOH 368 B HOH 167 5 HOH HOH 369 B HOH 178 5 HOH HOH 370 B HOH 11 5 HOH HOH 201 C HOH 71 5 HOH HOH 202 C HOH 117 5 HOH HOH 203 C HOH 166 5 HOH HOH 204 C GLY 37 n 1 GLY 37 A ALA 38 n 2 ALA 38 A MET 39 n 3 MET 39 A ALA 40 n 4 ALA 40 A GLN 41 n 5 GLN 41 A ARG 42 n 6 ARG 42 A MET 43 n 7 MET 43 A VAL 44 n 8 VAL 44 A TRP 45 n 9 TRP 45 A VAL 46 n 10 VAL 46 A ASP 47 n 11 ASP 47 A LEU 48 n 12 LEU 48 A GLU 49 n 13 GLU 49 A MET 50 n 14 MET 50 A THR 51 n 15 THR 51 A GLY 52 n 16 GLY 52 A LEU 53 n 17 LEU 53 A ASP 54 n 18 ASP 54 A ILE 55 n 19 ILE 55 A GLU 56 n 20 GLU 56 A LYS 57 n 21 LYS 57 A ASP 58 n 22 ASP 58 A GLN 59 n 23 GLN 59 A ILE 60 n 24 ILE 60 A ILE 61 n 25 ILE 61 A GLU 62 n 26 GLU 62 A MET 63 n 27 MET 63 A ALA 64 n 28 ALA 64 A CYS 65 n 29 CYS 65 A LEU 66 n 30 LEU 66 A ILE 67 n 31 ILE 67 A THR 68 n 32 THR 68 A ASP 69 n 33 ASP 69 A SER 70 n 34 SER 70 A ASP 71 n 35 ASP 71 A LEU 72 n 36 LEU 72 A ASN 73 n 37 ASN 73 A ILE 74 n 38 ILE 74 A LEU 75 n 39 LEU 75 A ALA 76 n 40 ALA 76 A GLU 77 n 41 GLU 77 A GLY 78 n 42 GLY 78 A PRO 79 n 43 PRO 79 A ASN 80 n 44 ASN 80 A LEU 81 n 45 LEU 81 A ILE 82 n 46 ILE 82 A ILE 83 n 47 ILE 83 A LYS 84 n 48 LYS 84 A GLN 85 n 49 GLN 85 A PRO 86 n 50 PRO 86 A ASP 87 n 51 ASP 87 A GLU 88 n 52 GLU 88 A LEU 89 n 53 LEU 89 A LEU 90 n 54 LEU 90 A ASP 91 n 55 ASP 91 A SER 92 n 56 SER 92 A MET 93 n 57 MET 93 A SER 94 n 58 SER 94 A ASP 95 n 59 ASP 95 A TRP 96 n 60 TRP 96 A CYS 97 n 61 CYS 97 A LYS 98 n 62 LYS 98 A GLU 99 n 63 GLU 99 A HIS 100 n 64 HIS 100 A HIS 101 n 65 HIS 101 A GLY 102 n 66 GLY 102 A LYS 103 n 67 LYS 103 A SER 104 n 68 SER 104 A GLY 105 n 69 GLY 105 A LEU 106 n 70 LEU 106 A THR 107 n 71 THR 107 A LYS 108 n 72 LYS 108 A ALA 109 n 73 ALA 109 A VAL 110 n 74 VAL 110 A LYS 111 n 75 LYS 111 A GLU 112 n 76 GLU 112 A SER 113 n 77 SER 113 A THR 114 n 78 THR 114 A ILE 115 n 79 ILE 115 A THR 116 n 80 THR 116 A LEU 117 n 81 LEU 117 A GLN 118 n 82 GLN 118 A GLN 119 n 83 GLN 119 A ALA 120 n 84 ALA 120 A GLU 121 n 85 GLU 121 A TYR 122 n 86 TYR 122 A GLU 123 n 87 GLU 123 A PHE 124 n 88 PHE 124 A LEU 125 n 89 LEU 125 A SER 126 n 90 SER 126 A PHE 127 n 91 PHE 127 A VAL 128 n 92 VAL 128 A ARG 129 n 93 ARG 129 A GLN 130 n 94 GLN 130 A GLN 131 n 95 GLN 131 A THR 132 n 96 THR 132 A PRO 133 n 97 PRO 133 A PRO 134 n 98 PRO 134 A GLY 135 n 99 GLY 135 A LEU 136 n 100 LEU 136 A CYS 137 n 101 CYS 137 A PRO 138 n 102 PRO 138 A LEU 139 n 103 LEU 139 A ALA 140 n 104 ALA 140 A GLY 141 n 105 GLY 141 A ASN 142 n 106 ASN 142 A SER 143 n 107 SER 143 A VAL 144 n 108 VAL 144 A HIS 145 n 109 HIS 145 A GLU 146 n 110 GLU 146 A ASP 147 n 111 ASP 147 A LYS 148 n 112 LYS 148 A LYS 149 n 113 LYS 149 A PHE 150 n 114 PHE 150 A LEU 151 n 115 LEU 151 A ASP 152 n 116 ASP 152 A LYS 153 n 117 LYS 153 A TYR 154 n 118 TYR 154 A MET 155 n 119 MET 155 A PRO 156 n 120 PRO 156 A GLN 157 n 121 GLN 157 A PHE 158 n 122 PHE 158 A MET 159 n 123 MET 159 A LYS 160 n 124 LYS 160 A HIS 161 n 125 HIS 161 A LEU 162 n 126 LEU 162 A HIS 163 n 127 HIS 163 A TYR 164 n 128 TYR 164 A ARG 165 n 129 ARG 165 A ILE 166 n 130 ILE 166 A ILE 167 n 131 ILE 167 A ASP 168 n 132 ASP 168 A VAL 169 n 133 VAL 169 A SER 170 n 134 SER 170 A THR 171 n 135 THR 171 A VAL 172 n 136 VAL 172 A LYS 173 n 137 LYS 173 A GLU 174 n 138 GLU 174 A LEU 175 n 139 LEU 175 A CYS 176 n 140 CYS 176 A ARG 177 n 141 ARG 177 A ARG 178 n 142 ARG 178 A TRP 179 n 143 TRP 179 A TYR 180 n 144 TYR 180 A PRO 181 n 145 PRO 181 A GLU 182 n 146 GLU 182 A GLU 183 n 147 GLU 183 A TYR 184 n 148 TYR 184 A GLU 185 n 149 GLU 185 A PHE 186 n 150 PHE 186 A ALA 187 n 151 ALA 187 A PRO 188 n 152 PRO 188 A LYS 189 n 153 LYS 189 A LYS 190 n 154 LYS 190 A ALA 191 n 155 ALA 191 A ALA 192 n 156 ALA 192 A SER 193 n 157 SER 193 A HIS 194 n 158 HIS 194 A ARG 195 n 159 ARG 195 A ALA 196 n 160 ALA 196 A LEU 197 n 161 LEU 197 A ASP 198 n 162 ASP 198 A ALA 199 n 163 ALA 199 A ILE 200 n 164 ILE 200 A SER 201 n 165 SER 201 A GLU 202 n 166 GLU 202 A SER 203 n 167 SER 203 A ILE 204 n 168 ILE 204 A LYS 205 n 169 LYS 205 A GLU 206 n 170 GLU 206 A LEU 207 n 171 LEU 207 A GLN 208 n 172 GLN 208 A PHE 209 n 173 PHE 209 A TYR 210 n 174 TYR 210 A ARG 211 n 175 ARG 211 A ASN 212 n 176 ASN 212 A ASN 213 n 177 ASN 213 A ILE 214 n 178 ILE 214 A PHE 215 n 179 PHE 215 A LYS 216 n 180 LYS 216 A GLY 37 n 1 GLY 37 B ALA 38 n 2 ALA 38 B MET 39 n 3 MET 39 B ALA 40 n 4 ALA 40 B GLN 41 n 5 GLN 41 B ARG 42 n 6 ARG 42 B MET 43 n 7 MET 43 B VAL 44 n 8 VAL 44 B TRP 45 n 9 TRP 45 B VAL 46 n 10 VAL 46 B ASP 47 n 11 ASP 47 B LEU 48 n 12 LEU 48 B GLU 49 n 13 GLU 49 B MET 50 n 14 MET 50 B THR 51 n 15 THR 51 B GLY 52 n 16 GLY 52 B LEU 53 n 17 LEU 53 B ASP 54 n 18 ASP 54 B ILE 55 n 19 ILE 55 B GLU 56 n 20 GLU 56 B LYS 57 n 21 LYS 57 B ASP 58 n 22 ASP 58 B GLN 59 n 23 GLN 59 B ILE 60 n 24 ILE 60 B ILE 61 n 25 ILE 61 B GLU 62 n 26 GLU 62 B MET 63 n 27 MET 63 B ALA 64 n 28 ALA 64 B CYS 65 n 29 CYS 65 B LEU 66 n 30 LEU 66 B ILE 67 n 31 ILE 67 B THR 68 n 32 THR 68 B ASP 69 n 33 ASP 69 B SER 70 n 34 SER 70 B ASP 71 n 35 ASP 71 B LEU 72 n 36 LEU 72 B ASN 73 n 37 ASN 73 B ILE 74 n 38 ILE 74 B LEU 75 n 39 LEU 75 B ALA 76 n 40 ALA 76 B GLU 77 n 41 GLU 77 B GLY 78 n 42 GLY 78 B PRO 79 n 43 PRO 79 B ASN 80 n 44 ASN 80 B LEU 81 n 45 LEU 81 B ILE 82 n 46 ILE 82 B ILE 83 n 47 ILE 83 B LYS 84 n 48 LYS 84 B GLN 85 n 49 GLN 85 B n 50 86 B n 51 87 B n 52 88 B n 53 89 B n 54 90 B n 55 91 B n 56 92 B n 57 93 B n 58 94 B n 59 95 B n 60 96 B n 61 97 B n 62 98 B n 63 99 B n 64 100 B n 65 101 B n 66 102 B n 67 103 B n 68 104 B n 69 105 B n 70 106 B n 71 107 B n 72 108 B n 73 109 B n 74 110 B n 75 111 B n 76 112 B n 77 113 B THR 114 n 78 THR 114 B ILE 115 n 79 ILE 115 B THR 116 n 80 THR 116 B LEU 117 n 81 LEU 117 B GLN 118 n 82 GLN 118 B GLN 119 n 83 GLN 119 B ALA 120 n 84 ALA 120 B GLU 121 n 85 GLU 121 B TYR 122 n 86 TYR 122 B GLU 123 n 87 GLU 123 B PHE 124 n 88 PHE 124 B LEU 125 n 89 LEU 125 B SER 126 n 90 SER 126 B PHE 127 n 91 PHE 127 B VAL 128 n 92 VAL 128 B ARG 129 n 93 ARG 129 B GLN 130 n 94 GLN 130 B GLN 131 n 95 GLN 131 B THR 132 n 96 THR 132 B PRO 133 n 97 PRO 133 B PRO 134 n 98 PRO 134 B GLY 135 n 99 GLY 135 B LEU 136 n 100 LEU 136 B CYS 137 n 101 CYS 137 B PRO 138 n 102 PRO 138 B LEU 139 n 103 LEU 139 B ALA 140 n 104 ALA 140 B GLY 141 n 105 GLY 141 B ASN 142 n 106 ASN 142 B SER 143 n 107 SER 143 B VAL 144 n 108 VAL 144 B HIS 145 n 109 HIS 145 B GLU 146 n 110 GLU 146 B ASP 147 n 111 ASP 147 B LYS 148 n 112 LYS 148 B LYS 149 n 113 LYS 149 B PHE 150 n 114 PHE 150 B LEU 151 n 115 LEU 151 B ASP 152 n 116 ASP 152 B LYS 153 n 117 LYS 153 B TYR 154 n 118 TYR 154 B MET 155 n 119 MET 155 B PRO 156 n 120 PRO 156 B GLN 157 n 121 GLN 157 B PHE 158 n 122 PHE 158 B MET 159 n 123 MET 159 B LYS 160 n 124 LYS 160 B HIS 161 n 125 HIS 161 B LEU 162 n 126 LEU 162 B HIS 163 n 127 HIS 163 B TYR 164 n 128 TYR 164 B ARG 165 n 129 ARG 165 B ILE 166 n 130 ILE 166 B ILE 167 n 131 ILE 167 B ASP 168 n 132 ASP 168 B VAL 169 n 133 VAL 169 B SER 170 n 134 SER 170 B THR 171 n 135 THR 171 B VAL 172 n 136 VAL 172 B LYS 173 n 137 LYS 173 B GLU 174 n 138 GLU 174 B LEU 175 n 139 LEU 175 B CYS 176 n 140 CYS 176 B ARG 177 n 141 ARG 177 B ARG 178 n 142 ARG 178 B TRP 179 n 143 TRP 179 B TYR 180 n 144 TYR 180 B PRO 181 n 145 PRO 181 B GLU 182 n 146 GLU 182 B GLU 183 n 147 GLU 183 B TYR 184 n 148 TYR 184 B GLU 185 n 149 GLU 185 B PHE 186 n 150 PHE 186 B ALA 187 n 151 ALA 187 B PRO 188 n 152 PRO 188 B n 153 189 B n 154 190 B n 155 191 B n 156 192 B SER 193 n 157 SER 193 B HIS 194 n 158 HIS 194 B ARG 195 n 159 ARG 195 B ALA 196 n 160 ALA 196 B LEU 197 n 161 LEU 197 B ASP 198 n 162 ASP 198 B ALA 199 n 163 ALA 199 B ILE 200 n 164 ILE 200 B SER 201 n 165 SER 201 B GLU 202 n 166 GLU 202 B SER 203 n 167 SER 203 B ILE 204 n 168 ILE 204 B LYS 205 n 169 LYS 205 B GLU 206 n 170 GLU 206 B LEU 207 n 171 LEU 207 B GLN 208 n 172 GLN 208 B PHE 209 n 173 PHE 209 B TYR 210 n 174 TYR 210 B ARG 211 n 175 ARG 211 B ASN 212 n 176 ASN 212 B ASN 213 n 177 ASN 213 B ILE 214 n 178 ILE 214 B PHE 215 n 179 PHE 215 B LYS 216 n 180 LYS 216 B A 1 n 1 A 1 C A 2 n 2 A 2 C author_and_software_defined_assembly PISA 3 trimeric gel filtration 4690 -71 14510 A ASP 47 A OD1 ASP 11 1_555 C MG 101 E MG MG 1_555 C A 1 C O3' A 1 1_555 155.9 A ASP 47 A OD1 ASP 11 1_555 C MG 101 E MG MG 1_555 C A 2 C OP1 A 2 1_555 101.7 C A 1 C O3' A 1 1_555 C MG 101 E MG MG 1_555 C A 2 C OP1 A 2 1_555 56.4 A ASP 47 A OD1 ASP 11 1_555 C MG 101 E MG MG 1_555 A HOH 428 F O HOH 1_555 87.9 C A 1 C O3' A 1 1_555 C MG 101 E MG MG 1_555 A HOH 428 F O HOH 1_555 85.3 C A 2 C OP1 A 2 1_555 C MG 101 E MG MG 1_555 A HOH 428 F O HOH 1_555 97.0 A ASP 47 A OD1 ASP 11 1_555 C MG 101 E MG MG 1_555 A HOH 403 F O HOH 1_555 101.3 C A 1 C O3' A 1 1_555 C MG 101 E MG MG 1_555 A HOH 403 F O HOH 1_555 99.6 C A 2 C OP1 A 2 1_555 C MG 101 E MG MG 1_555 A HOH 403 F O HOH 1_555 155.8 A HOH 428 F O HOH 1_555 C MG 101 E MG MG 1_555 A HOH 403 F O HOH 1_555 76.6 A ASP 47 A OD1 ASP 11 1_555 C MG 101 E MG MG 1_555 A HOH 487 F O HOH 1_555 82.1 C A 1 C O3' A 1 1_555 C MG 101 E MG MG 1_555 A HOH 487 F O HOH 1_555 104.1 C A 2 C OP1 A 2 1_555 C MG 101 E MG MG 1_555 A HOH 487 F O HOH 1_555 85.7 A HOH 428 F O HOH 1_555 C MG 101 E MG MG 1_555 A HOH 487 F O HOH 1_555 170.0 A HOH 403 F O HOH 1_555 C MG 101 E MG MG 1_555 A HOH 487 F O HOH 1_555 104.7 A GLU 49 A OE1 GLU 13 1_555 A ZN 301 D ZN ZN 1_555 A HIS 194 A ND1 HIS 158 1_555 124.5 A GLU 49 A OE1 GLU 13 1_555 A ZN 301 D ZN ZN 1_555 C A 2 C OP1 A 2 1_555 107.3 A HIS 194 A ND1 HIS 158 1_555 A ZN 301 D ZN ZN 1_555 C A 2 C OP1 A 2 1_555 101.0 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O LEU 75 A O LEU 39 A N ILE 67 A N ILE 31 A O LEU 66 A O LEU 30 A N TRP 45 A N TRP 9 A N VAL 44 A N VAL 8 A O ALA 140 A O ALA 104 A N LEU 139 A N LEU 103 A O ILE 167 A O ILE 131 B O ALA 76 B O ALA 40 B N ILE 67 B N ILE 31 B O ILE 61 B O ILE 25 B N GLU 49 B N GLU 13 B N VAL 46 B N VAL 10 B O ALA 140 B O ALA 104 B N LEU 139 B N LEU 103 B O ILE 167 B O ILE 131 1 B PRO 86 B PRO 50 1 Y 1 B ASP 87 B ASP 51 1 Y 1 B GLU 88 B GLU 52 1 Y 1 B LEU 89 B LEU 53 1 Y 1 B LEU 90 B LEU 54 1 Y 1 B ASP 91 B ASP 55 1 Y 1 B SER 92 B SER 56 1 Y 1 B MET 93 B MET 57 1 Y 1 B SER 94 B SER 58 1 Y 1 B ASP 95 B ASP 59 1 Y 1 B TRP 96 B TRP 60 1 Y 1 B CYS 97 B CYS 61 1 Y 1 B LYS 98 B LYS 62 1 Y 1 B GLU 99 B GLU 63 1 Y 1 B HIS 100 B HIS 64 1 Y 1 B HIS 101 B HIS 65 1 Y 1 B GLY 102 B GLY 66 1 Y 1 B LYS 103 B LYS 67 1 Y 1 B SER 104 B SER 68 1 Y 1 B GLY 105 B GLY 69 1 Y 1 B LEU 106 B LEU 70 1 Y 1 B THR 107 B THR 71 1 Y 1 B LYS 108 B LYS 72 1 Y 1 B ALA 109 B ALA 73 1 Y 1 B VAL 110 B VAL 74 1 Y 1 B LYS 111 B LYS 75 1 Y 1 B GLU 112 B GLU 76 1 Y 1 B SER 113 B SER 77 1 Y 1 B LYS 189 B LYS 153 1 Y 1 B LYS 190 B LYS 154 1 Y 1 B ALA 191 B ALA 155 1 Y 1 B ALA 192 B ALA 156 1 Y 158.370 58.1400 31.310 -10.3692 0.0000 0.0000 11.7217 0.0000 -1.3525 0.9460 0.9090 0.2500 0.2030 0.2050 1.9700 41.9800 1376 27319 5.0400 100.0000 0.3070 RANDOM 1 THROUGHOUT 0.000 MOLECULAR REPLACEMENT 0.1810 0.1640 0.1600 0.280 1.9700 41.9800 197 2916 62.60 0 44 2675 330 1201 SINUSOIDAL 2.000 858 HARMONIC 5.000 5463 HARMONIC 20.000 1 SEMIHARMONIC 5.000 363 SEMIHARMONIC 5.000 5852 SEMIHARMONIC 4.000 0.010 5463 HARMONIC 2.000 1.020 9889 HARMONIC 2.000 3.680 15.110 0.3585 0.0000 0.2633 0.2677 1.9800 27 520 547 50 4.9400 99.6300 48.470 1.970 41.980 6RCL 27363 0.999 0.076 0.028 0.082 1 13.400 221998 8.100 2 100.000 1.890 1.970 2.040 20401 2609 0.671 0.711 2.022 1 1.100 7.800 100.000 0.040 7.630 41.980 3744 556 0.998 0.016 0.043 1 37.700 6.700 99.600 refinement BUSTER 2.10.3 data scaling Aimless 0.7.2 data extraction PDB_EXTRACT 3.24 data reduction XDS phasing PHASER N Oligoribonuclease, mitochondrial/RNA Complex Crystal structure of REXO2-D199A-AA 1 N N 1 N N 2 N N 3 N N 4 N N 5 N N 5 N N 5 N N A PRO 86 A PRO 50 HELX_P A SER 92 A SER 56 1 AA1 7 A SER 94 A SER 58 HELX_P A SER 104 A SER 68 1 AA2 11 A GLY 105 A GLY 69 HELX_P A GLU 112 A GLU 76 1 AA3 8 A THR 116 A THR 80 HELX_P A THR 132 A THR 96 1 AA4 17 A VAL 144 A VAL 108 HELX_P A MET 155 A MET 119 1 AA5 12 A MET 155 A MET 119 HELX_P A LEU 162 A LEU 126 1 AA6 8 A VAL 169 A VAL 133 HELX_P A TYR 180 A TYR 144 1 AA7 12 A TYR 180 A TYR 144 HELX_P A ALA 187 A ALA 151 1 AA8 8 A ARG 195 A ARG 159 HELX_P A ILE 214 A ILE 178 1 AA9 20 B THR 116 B THR 80 HELX_P B GLN 130 B GLN 94 1 AB1 15 B SER 143 B SER 107 HELX_P B MET 155 B MET 119 1 AB2 13 B MET 155 B MET 119 HELX_P B HIS 161 B HIS 125 1 AB3 7 B VAL 169 B VAL 133 HELX_P B TYR 180 B TYR 144 1 AB4 12 B TYR 180 B TYR 144 HELX_P B PHE 186 B PHE 150 1 AB5 7 B ARG 195 B ARG 159 HELX_P B PHE 215 B PHE 179 1 AB6 21 metalc 2.229 A ASP 47 A OD1 ASP 11 1_555 C MG 101 E MG MG 1_555 metalc 2.071 A GLU 49 A OE1 GLU 13 1_555 A ZN 301 D ZN ZN 1_555 metalc 2.433 A HIS 194 A ND1 HIS 158 1_555 A ZN 301 D ZN ZN 1_555 metalc 2.699 C A 1 C O3' A 1 1_555 C MG 101 E MG MG 1_555 metalc 1.913 C A 2 C OP1 A 2 1_555 A ZN 301 D ZN ZN 1_555 metalc 2.684 C A 2 C OP1 A 2 1_555 C MG 101 E MG MG 1_555 metalc 2.293 C MG 101 E MG MG 1_555 A HOH 428 F O HOH 1_555 metalc 2.440 C MG 101 E MG MG 1_555 A HOH 403 F O HOH 1_555 metalc 2.448 C MG 101 E MG MG 1_555 A HOH 487 F O HOH 1_555 HYDROLASE Mitochondria, Oligoribonuclease, REXO2, hydrolase ORN_HUMAN UNP 1 1 Q9Y3B8 Q9Y3B8-2 MAQRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDSMSDWCKEHHGKSGLTKAVKESTITLQ QAEYEFLSFVRQQTPPGLCPLAGNSVHEDKKFLDKYMPQFMKHLHYRIIDVSTVKELCRRWYPEEYEFAPKKAASHRALD DISESIKELQFYRNNIFK 6RCL PDB 2 1 6RCL 1 178 6RCL 39 216 Q9Y3B8 A 1 3 180 1 178 6RCL 39 216 Q9Y3B8 B 1 3 180 1 2 6RCL 1 2 6RCL C 2 1 2 1 expression tag GLY 37 6RCL A Q9Y3B8 UNP 1 1 expression tag ALA 38 6RCL A Q9Y3B8 UNP 2 1 ASP conflict ALA 199 6RCL A Q9Y3B8 UNP 161 163 2 expression tag GLY 37 6RCL B Q9Y3B8 UNP 1 2 expression tag ALA 38 6RCL B Q9Y3B8 UNP 2 2 ASP conflict ALA 199 6RCL B Q9Y3B8 UNP 161 163 5 5 anti-parallel anti-parallel parallel parallel anti-parallel anti-parallel parallel parallel A ILE 74 A ILE 38 A ILE 82 A ILE 46 A ILE 60 A ILE 24 A THR 68 A THR 32 A MET 43 A MET 7 A MET 50 A MET 14 A LEU 139 A LEU 103 A GLY 141 A GLY 105 A ILE 166 A ILE 130 A ASP 168 A ASP 132 B ILE 74 B ILE 38 B ILE 82 B ILE 46 B ILE 60 B ILE 24 B THR 68 B THR 32 B MET 43 B MET 7 B MET 50 B MET 14 B LEU 139 B LEU 103 B GLY 141 B GLY 105 B ILE 166 B ILE 130 B ASP 168 B ASP 132 binding site for residue ZN A 301 A ZN 301 Software 3 binding site for residue MG C 101 C MG 101 Software 6 A GLU 49 A GLU 13 3 1_555 A HIS 194 A HIS 158 3 1_555 C A 2 C A 2 3 1_555 A ASP 47 A ASP 11 6 1_555 A HOH 403 F HOH 6 1_555 A HOH 428 F HOH 6 1_555 A HOH 487 F HOH 6 1_555 C A 1 C A 1 6 1_555 C A 2 C A 2 6 1_555 20 C 2 2 21