0.026139
0.000000
0.007824
0.000000
0.023134
0.000000
0.000000
0.000000
0.022756
0.00000
0.00000
0.00000
Arnoux, P.
Siponen, M.I.
Pignol, D.
Brandelet, G.
De Groot, A.
Blanchard, L.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
106.66
90.00
38.257
43.227
45.870
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C3 H8 O3
92.094
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
S
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
C
N
80
N
C
N
81
N
O
N
82
N
N
N
83
N
O
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
N
N
95
S
C
N
96
N
C
N
97
N
O
N
98
N
C
N
99
N
C
N
100
N
C
N
101
N
O
N
102
N
O
N
103
N
O
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
N
N
114
N
C
N
115
N
C
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
C
N
124
N
O
N
125
N
C
N
126
N
O
N
127
N
C
N
128
N
O
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
S
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
N
N
251
S
C
N
252
N
C
N
253
N
O
N
254
N
C
N
255
N
C
N
256
N
C
N
257
N
O
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
N
N
268
S
C
N
269
N
C
N
270
N
O
N
271
N
C
N
272
N
O
N
273
N
O
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
N
N
282
S
C
N
283
N
C
N
284
N
O
N
285
R
C
N
286
N
O
N
287
N
C
N
288
N
O
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
N
N
299
S
C
N
300
N
C
N
301
N
O
N
302
N
C
Y
303
N
C
Y
304
N
C
Y
305
N
C
Y
306
N
C
Y
307
N
C
Y
308
N
C
N
309
N
O
N
310
N
O
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
N
N
323
S
C
N
324
N
C
N
325
N
O
N
326
N
C
N
327
N
C
N
328
N
C
N
329
N
O
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
doub
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
doub
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
doub
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
doub
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
doub
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
doub
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
Y
294
N
doub
Y
295
N
sing
Y
296
N
sing
N
297
N
sing
Y
298
N
doub
N
299
N
sing
Y
300
N
doub
N
301
N
sing
Y
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
doub
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
UK
Nucleic Acids Res.
NARHAD
0389
1362-4962
47
11403
11417
10.1093/nar/gkz883
31598697
Crystal structure of the transcriptional repressor DdrO: insight into the metalloprotease/repressor-controlled radiation response in Deinococcus.
2019
10.2210/pdb6rnz/pdb
pdb_00006rnz
100
1
N
PIXEL
2016-07-21
DECTRIS PILATUS3 2M
SINGLE WAVELENGTH
M
x-ray
1
0.9660
1.0
MASSIF-1
ESRF
0.9660
SYNCHROTRON
ESRF BEAMLINE MASSIF-1
7512.542
HTH-type transcriptional regulator DdrOC
N-terminus
2
man
polymer
92.094
GLYCEROL
3
syn
non-polymer
18.015
water
255
nat
water
no
no
MKLHERLRELRSERGLRLKDVAEVAQISVPYLSDLERGRTNPSLETLQTLAGAYNITVHDLLEGVE
MKLHERLRELRSERGLRLKDVAEVAQISVPYLSDLERGRTNPSLETLQTLAGAYNITVHDLLEGVE
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
1
66
ddrOC, Deide_20570
310783
Deinococcus deserti
866768
Escherichia coli 'BL21-Gold(DE3)pLysS AG'
Biological sequence
1
2.42
49.14
VAPOR DIFFUSION, SITTING DROP
0.1 M Bis-Tris propane pH 7, 2.5 M Ammonium Sulfate
293
citation
citation_author
citation
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
refine
software
repository
Initial release
Data collection
Database references
Database references
Data collection
Database references
Refinement description
1
0
2019-10-09
1
1
2019-10-23
1
2
2019-12-04
1
3
2024-01-24
_citation.country
_citation.journal_abbrev
_citation.journal_id_ASTM
_citation.journal_id_CSD
_citation.journal_id_ISSN
_citation.pdbx_database_id_DOI
_citation.pdbx_database_id_PubMed
_citation.title
_citation.year
_citation.journal_volume
_citation.page_first
_citation.page_last
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_refine.pdbx_diffrn_id
_software.name
Contains the full-length protein
Contains the full-length seleno-methionine labelled protein
N
PDBE
Y
PDBE
2019-05-10
REL
REL
1
A
O
HOH
321
5.92
1
A
O
HOH
322
5.95
1
A
O
HOH
323
6.31
1
A
O
HOH
324
6.88
1
B
O
HOH
228
6.12
1
B
O
HOH
229
6.14
1
B
O
HOH
230
6.86
1
B
O
HOH
231
6.88
GOL
GLYCEROL
HOH
water
6RNX
PDB
experimental model
GOL
100
2
GOL
GOL
100
A
GOL
101
2
GOL
GOL
101
A
GOL
102
2
GOL
GOL
102
A
HOH
227
3
HOH
HOH
201
A
HOH
138
3
HOH
HOH
202
A
HOH
232
3
HOH
HOH
203
A
HOH
28
3
HOH
HOH
204
A
HOH
173
3
HOH
HOH
205
A
HOH
50
3
HOH
HOH
206
A
HOH
240
3
HOH
HOH
207
A
HOH
241
3
HOH
HOH
208
A
HOH
199
3
HOH
HOH
209
A
HOH
225
3
HOH
HOH
210
A
HOH
3
3
HOH
HOH
211
A
HOH
223
3
HOH
HOH
212
A
HOH
235
3
HOH
HOH
213
A
HOH
41
3
HOH
HOH
214
A
HOH
9
3
HOH
HOH
215
A
HOH
213
3
HOH
HOH
216
A
HOH
194
3
HOH
HOH
217
A
HOH
18
3
HOH
HOH
218
A
HOH
52
3
HOH
HOH
219
A
HOH
137
3
HOH
HOH
220
A
HOH
226
3
HOH
HOH
221
A
HOH
152
3
HOH
HOH
222
A
HOH
243
3
HOH
HOH
223
A
HOH
92
3
HOH
HOH
224
A
HOH
146
3
HOH
HOH
225
A
HOH
4
3
HOH
HOH
226
A
HOH
182
3
HOH
HOH
227
A
HOH
141
3
HOH
HOH
228
A
HOH
22
3
HOH
HOH
229
A
HOH
125
3
HOH
HOH
230
A
HOH
198
3
HOH
HOH
231
A
HOH
239
3
HOH
HOH
232
A
HOH
118
3
HOH
HOH
233
A
HOH
17
3
HOH
HOH
234
A
HOH
80
3
HOH
HOH
235
A
HOH
43
3
HOH
HOH
236
A
HOH
224
3
HOH
HOH
237
A
HOH
169
3
HOH
HOH
238
A
HOH
37
3
HOH
HOH
239
A
HOH
111
3
HOH
HOH
240
A
HOH
185
3
HOH
HOH
241
A
HOH
249
3
HOH
HOH
242
A
HOH
67
3
HOH
HOH
243
A
HOH
25
3
HOH
HOH
244
A
HOH
149
3
HOH
HOH
245
A
HOH
86
3
HOH
HOH
246
A
HOH
66
3
HOH
HOH
247
A
HOH
162
3
HOH
HOH
248
A
HOH
110
3
HOH
HOH
249
A
HOH
181
3
HOH
HOH
250
A
HOH
200
3
HOH
HOH
251
A
HOH
164
3
HOH
HOH
252
A
HOH
64
3
HOH
HOH
253
A
HOH
69
3
HOH
HOH
254
A
HOH
221
3
HOH
HOH
255
A
HOH
150
3
HOH
HOH
256
A
HOH
210
3
HOH
HOH
257
A
HOH
214
3
HOH
HOH
258
A
HOH
32
3
HOH
HOH
259
A
HOH
218
3
HOH
HOH
260
A
HOH
196
3
HOH
HOH
261
A
HOH
46
3
HOH
HOH
262
A
HOH
51
3
HOH
HOH
263
A
HOH
128
3
HOH
HOH
264
A
HOH
63
3
HOH
HOH
265
A
HOH
8
3
HOH
HOH
266
A
HOH
195
3
HOH
HOH
267
A
HOH
211
3
HOH
HOH
268
A
HOH
191
3
HOH
HOH
269
A
HOH
76
3
HOH
HOH
270
A
HOH
33
3
HOH
HOH
271
A
HOH
47
3
HOH
HOH
272
A
HOH
13
3
HOH
HOH
273
A
HOH
179
3
HOH
HOH
274
A
HOH
53
3
HOH
HOH
275
A
HOH
244
3
HOH
HOH
276
A
HOH
101
3
HOH
HOH
277
A
HOH
167
3
HOH
HOH
278
A
HOH
233
3
HOH
HOH
279
A
HOH
130
3
HOH
HOH
280
A
HOH
14
3
HOH
HOH
281
A
HOH
201
3
HOH
HOH
282
A
HOH
109
3
HOH
HOH
283
A
HOH
104
3
HOH
HOH
284
A
HOH
156
3
HOH
HOH
285
A
HOH
107
3
HOH
HOH
286
A
HOH
143
3
HOH
HOH
287
A
HOH
135
3
HOH
HOH
288
A
HOH
42
3
HOH
HOH
289
A
HOH
96
3
HOH
HOH
290
A
HOH
126
3
HOH
HOH
291
A
HOH
93
3
HOH
HOH
292
A
HOH
145
3
HOH
HOH
293
A
HOH
87
3
HOH
HOH
294
A
HOH
139
3
HOH
HOH
295
A
HOH
197
3
HOH
HOH
296
A
HOH
189
3
HOH
HOH
297
A
HOH
97
3
HOH
HOH
298
A
HOH
81
3
HOH
HOH
299
A
HOH
159
3
HOH
HOH
300
A
HOH
188
3
HOH
HOH
301
A
HOH
121
3
HOH
HOH
302
A
HOH
252
3
HOH
HOH
303
A
HOH
144
3
HOH
HOH
304
A
HOH
103
3
HOH
HOH
305
A
HOH
157
3
HOH
HOH
306
A
HOH
7
3
HOH
HOH
307
A
HOH
116
3
HOH
HOH
308
A
HOH
62
3
HOH
HOH
309
A
HOH
245
3
HOH
HOH
310
A
HOH
54
3
HOH
HOH
311
A
HOH
95
3
HOH
HOH
312
A
HOH
127
3
HOH
HOH
313
A
HOH
219
3
HOH
HOH
314
A
HOH
82
3
HOH
HOH
315
A
HOH
129
3
HOH
HOH
316
A
HOH
154
3
HOH
HOH
317
A
HOH
131
3
HOH
HOH
318
A
HOH
247
3
HOH
HOH
319
A
HOH
85
3
HOH
HOH
320
A
HOH
163
3
HOH
HOH
321
A
HOH
254
3
HOH
HOH
322
A
HOH
192
3
HOH
HOH
323
A
HOH
248
3
HOH
HOH
324
A
HOH
114
3
HOH
HOH
101
B
HOH
209
3
HOH
HOH
102
B
HOH
48
3
HOH
HOH
103
B
HOH
174
3
HOH
HOH
104
B
HOH
98
3
HOH
HOH
105
B
HOH
71
3
HOH
HOH
106
B
HOH
230
3
HOH
HOH
107
B
HOH
231
3
HOH
HOH
108
B
HOH
89
3
HOH
HOH
109
B
HOH
234
3
HOH
HOH
110
B
HOH
6
3
HOH
HOH
111
B
HOH
132
3
HOH
HOH
112
B
HOH
57
3
HOH
HOH
113
B
HOH
1
3
HOH
HOH
114
B
HOH
153
3
HOH
HOH
115
B
HOH
70
3
HOH
HOH
116
B
HOH
177
3
HOH
HOH
117
B
HOH
147
3
HOH
HOH
118
B
HOH
68
3
HOH
HOH
119
B
HOH
88
3
HOH
HOH
120
B
HOH
113
3
HOH
HOH
121
B
HOH
133
3
HOH
HOH
122
B
HOH
11
3
HOH
HOH
123
B
HOH
171
3
HOH
HOH
124
B
HOH
24
3
HOH
HOH
125
B
HOH
238
3
HOH
HOH
126
B
HOH
10
3
HOH
HOH
127
B
HOH
5
3
HOH
HOH
128
B
HOH
36
3
HOH
HOH
129
B
HOH
142
3
HOH
HOH
130
B
HOH
19
3
HOH
HOH
131
B
HOH
94
3
HOH
HOH
132
B
HOH
112
3
HOH
HOH
133
B
HOH
228
3
HOH
HOH
134
B
HOH
12
3
HOH
HOH
135
B
HOH
15
3
HOH
HOH
136
B
HOH
222
3
HOH
HOH
137
B
HOH
55
3
HOH
HOH
138
B
HOH
136
3
HOH
HOH
139
B
HOH
27
3
HOH
HOH
140
B
HOH
178
3
HOH
HOH
141
B
HOH
140
3
HOH
HOH
142
B
HOH
61
3
HOH
HOH
143
B
HOH
102
3
HOH
HOH
144
B
HOH
78
3
HOH
HOH
145
B
HOH
151
3
HOH
HOH
146
B
HOH
29
3
HOH
HOH
147
B
HOH
39
3
HOH
HOH
148
B
HOH
23
3
HOH
HOH
149
B
HOH
16
3
HOH
HOH
150
B
HOH
180
3
HOH
HOH
151
B
HOH
122
3
HOH
HOH
152
B
HOH
176
3
HOH
HOH
153
B
HOH
2
3
HOH
HOH
154
B
HOH
158
3
HOH
HOH
155
B
HOH
35
3
HOH
HOH
156
B
HOH
65
3
HOH
HOH
157
B
HOH
120
3
HOH
HOH
158
B
HOH
90
3
HOH
HOH
159
B
HOH
166
3
HOH
HOH
160
B
HOH
190
3
HOH
HOH
161
B
HOH
202
3
HOH
HOH
162
B
HOH
208
3
HOH
HOH
163
B
HOH
40
3
HOH
HOH
164
B
HOH
38
3
HOH
HOH
165
B
HOH
31
3
HOH
HOH
166
B
HOH
106
3
HOH
HOH
167
B
HOH
124
3
HOH
HOH
168
B
HOH
123
3
HOH
HOH
169
B
HOH
220
3
HOH
HOH
170
B
HOH
30
3
HOH
HOH
171
B
HOH
20
3
HOH
HOH
172
B
HOH
44
3
HOH
HOH
173
B
HOH
216
3
HOH
HOH
174
B
HOH
75
3
HOH
HOH
175
B
HOH
45
3
HOH
HOH
176
B
HOH
134
3
HOH
HOH
177
B
HOH
212
3
HOH
HOH
178
B
HOH
83
3
HOH
HOH
179
B
HOH
242
3
HOH
HOH
180
B
HOH
193
3
HOH
HOH
181
B
HOH
60
3
HOH
HOH
182
B
HOH
175
3
HOH
HOH
183
B
HOH
205
3
HOH
HOH
184
B
HOH
72
3
HOH
HOH
185
B
HOH
168
3
HOH
HOH
186
B
HOH
49
3
HOH
HOH
187
B
HOH
26
3
HOH
HOH
188
B
HOH
237
3
HOH
HOH
189
B
HOH
100
3
HOH
HOH
190
B
HOH
99
3
HOH
HOH
191
B
HOH
79
3
HOH
HOH
192
B
HOH
183
3
HOH
HOH
193
B
HOH
115
3
HOH
HOH
194
B
HOH
74
3
HOH
HOH
195
B
HOH
56
3
HOH
HOH
196
B
HOH
34
3
HOH
HOH
197
B
HOH
172
3
HOH
HOH
198
B
HOH
203
3
HOH
HOH
199
B
HOH
21
3
HOH
HOH
200
B
HOH
161
3
HOH
HOH
201
B
HOH
59
3
HOH
HOH
202
B
HOH
250
3
HOH
HOH
203
B
HOH
91
3
HOH
HOH
204
B
HOH
184
3
HOH
HOH
205
B
HOH
117
3
HOH
HOH
206
B
HOH
119
3
HOH
HOH
207
B
HOH
187
3
HOH
HOH
208
B
HOH
108
3
HOH
HOH
209
B
HOH
236
3
HOH
HOH
210
B
HOH
58
3
HOH
HOH
211
B
HOH
186
3
HOH
HOH
212
B
HOH
170
3
HOH
HOH
213
B
HOH
77
3
HOH
HOH
214
B
HOH
155
3
HOH
HOH
215
B
HOH
105
3
HOH
HOH
216
B
HOH
215
3
HOH
HOH
217
B
HOH
148
3
HOH
HOH
218
B
HOH
229
3
HOH
HOH
219
B
HOH
160
3
HOH
HOH
220
B
HOH
73
3
HOH
HOH
221
B
HOH
251
3
HOH
HOH
222
B
HOH
84
3
HOH
HOH
223
B
HOH
255
3
HOH
HOH
224
B
HOH
217
3
HOH
HOH
225
B
HOH
204
3
HOH
HOH
226
B
HOH
246
3
HOH
HOH
227
B
HOH
253
3
HOH
HOH
228
B
HOH
165
3
HOH
HOH
229
B
HOH
207
3
HOH
HOH
230
B
HOH
206
3
HOH
HOH
231
B
MET
1
n
1
MET
1
A
LYS
2
n
2
LYS
2
A
LEU
3
n
3
LEU
3
A
HIS
4
n
4
HIS
4
A
GLU
5
n
5
GLU
5
A
ARG
6
n
6
ARG
6
A
LEU
7
n
7
LEU
7
A
ARG
8
n
8
ARG
8
A
GLU
9
n
9
GLU
9
A
LEU
10
n
10
LEU
10
A
ARG
11
n
11
ARG
11
A
SER
12
n
12
SER
12
A
GLU
13
n
13
GLU
13
A
ARG
14
n
14
ARG
14
A
GLY
15
n
15
GLY
15
A
LEU
16
n
16
LEU
16
A
ARG
17
n
17
ARG
17
A
LEU
18
n
18
LEU
18
A
LYS
19
n
19
LYS
19
A
ASP
20
n
20
ASP
20
A
VAL
21
n
21
VAL
21
A
ALA
22
n
22
ALA
22
A
GLU
23
n
23
GLU
23
A
VAL
24
n
24
VAL
24
A
ALA
25
n
25
ALA
25
A
GLN
26
n
26
GLN
26
A
ILE
27
n
27
ILE
27
A
SER
28
n
28
SER
28
A
VAL
29
n
29
VAL
29
A
PRO
30
n
30
PRO
30
A
TYR
31
n
31
TYR
31
A
LEU
32
n
32
LEU
32
A
SER
33
n
33
SER
33
A
ASP
34
n
34
ASP
34
A
LEU
35
n
35
LEU
35
A
GLU
36
n
36
GLU
36
A
ARG
37
n
37
ARG
37
A
GLY
38
n
38
GLY
38
A
ARG
39
n
39
ARG
39
A
THR
40
n
40
THR
40
A
ASN
41
n
41
ASN
41
A
PRO
42
n
42
PRO
42
A
SER
43
n
43
SER
43
A
LEU
44
n
44
LEU
44
A
GLU
45
n
45
GLU
45
A
THR
46
n
46
THR
46
A
LEU
47
n
47
LEU
47
A
GLN
48
n
48
GLN
48
A
THR
49
n
49
THR
49
A
LEU
50
n
50
LEU
50
A
ALA
51
n
51
ALA
51
A
GLY
52
n
52
GLY
52
A
ALA
53
n
53
ALA
53
A
TYR
54
n
54
TYR
54
A
ASN
55
n
55
ASN
55
A
ILE
56
n
56
ILE
56
A
THR
57
n
57
THR
57
A
VAL
58
n
58
VAL
58
A
HIS
59
n
59
HIS
59
A
ASP
60
n
60
ASP
60
A
LEU
61
n
61
LEU
61
A
LEU
62
n
62
LEU
62
A
GLU
63
n
63
GLU
63
A
GLY
64
n
64
GLY
64
A
VAL
65
n
65
VAL
65
A
GLU
66
n
66
GLU
66
A
MET
1
n
1
MET
1
B
LYS
2
n
2
LYS
2
B
LEU
3
n
3
LEU
3
B
HIS
4
n
4
HIS
4
B
GLU
5
n
5
GLU
5
B
ARG
6
n
6
ARG
6
B
LEU
7
n
7
LEU
7
B
ARG
8
n
8
ARG
8
B
GLU
9
n
9
GLU
9
B
LEU
10
n
10
LEU
10
B
ARG
11
n
11
ARG
11
B
SER
12
n
12
SER
12
B
GLU
13
n
13
GLU
13
B
ARG
14
n
14
ARG
14
B
GLY
15
n
15
GLY
15
B
LEU
16
n
16
LEU
16
B
ARG
17
n
17
ARG
17
B
LEU
18
n
18
LEU
18
B
LYS
19
n
19
LYS
19
B
ASP
20
n
20
ASP
20
B
VAL
21
n
21
VAL
21
B
ALA
22
n
22
ALA
22
B
GLU
23
n
23
GLU
23
B
VAL
24
n
24
VAL
24
B
ALA
25
n
25
ALA
25
B
GLN
26
n
26
GLN
26
B
ILE
27
n
27
ILE
27
B
SER
28
n
28
SER
28
B
VAL
29
n
29
VAL
29
B
PRO
30
n
30
PRO
30
B
TYR
31
n
31
TYR
31
B
LEU
32
n
32
LEU
32
B
SER
33
n
33
SER
33
B
ASP
34
n
34
ASP
34
B
LEU
35
n
35
LEU
35
B
GLU
36
n
36
GLU
36
B
ARG
37
n
37
ARG
37
B
GLY
38
n
38
GLY
38
B
ARG
39
n
39
ARG
39
B
THR
40
n
40
THR
40
B
ASN
41
n
41
ASN
41
B
PRO
42
n
42
PRO
42
B
SER
43
n
43
SER
43
B
LEU
44
n
44
LEU
44
B
GLU
45
n
45
GLU
45
B
THR
46
n
46
THR
46
B
LEU
47
n
47
LEU
47
B
GLN
48
n
48
GLN
48
B
THR
49
n
49
THR
49
B
LEU
50
n
50
LEU
50
B
ALA
51
n
51
ALA
51
B
GLY
52
n
52
GLY
52
B
ALA
53
n
53
ALA
53
B
TYR
54
n
54
TYR
54
B
ASN
55
n
55
ASN
55
B
ILE
56
n
56
ILE
56
B
THR
57
n
57
THR
57
B
VAL
58
n
58
VAL
58
B
HIS
59
n
59
HIS
59
B
ASP
60
n
60
ASP
60
B
LEU
61
n
61
LEU
61
B
LEU
62
n
62
LEU
62
B
GLU
63
n
63
GLU
63
B
GLY
64
n
64
GLY
64
B
VAL
65
n
65
VAL
65
B
GLU
66
n
66
GLU
66
B
author_defined_assembly
1
monomeric
author_defined_assembly
1
monomeric
monomer
gel filtration
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
B
B
OG1
O
THR
HOH
40
101
2.04
A
1
A
A
O
O
HOH
HOH
217
227
2.06
1
A
A
O
O
HOH
HOH
313
314
2.06
1
A
A
O
O
HOH
HOH
212
300
2.06
1
A
A
O
O
HOH
HOH
205
270
2.14
1
4.26
0.50
120.30
124.56
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
14
14
14
N
1
3.54
0.50
120.30
123.84
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
17
17
17
N
1
11.38
1.70
111.00
122.38
A
A
A
CB
CG
CD1
LEU
LEU
LEU
44
44
44
A
A
A
N
1
-3.57
0.50
120.30
116.73
B
B
B
NE
CZ
NH2
ARG
ARG
ARG
8
8
8
N
1
15.37
2.10
111.80
127.17
B
B
B
CG
CD
NE
ARG
ARG
ARG
39
39
39
N
1
5.49
0.50
120.30
125.79
B
B
B
NE
CZ
NH1
ARG
ARG
ARG
39
39
39
N
1
-3.35
0.50
120.30
116.95
B
B
B
NE
CZ
NH2
ARG
ARG
ARG
39
39
39
N
1
A
A
CD
OE2
GLU
GLU
5
5
-0.076
0.011
1.252
1.176
N
1
A
A
CB
CG
ASP
ASP
20
20
0.189
0.021
1.513
1.702
N
1
A
A
CG
OD2
ASP
ASP
20
20
0.204
0.023
1.249
1.453
N
1
A
A
CD
OE2
GLU
GLU
45
45
-0.072
0.011
1.252
1.180
N
1
B
B
CZ
NH2
ARG
ARG
8
8
0.095
0.013
1.326
1.421
N
1
B
B
CD
OE1
GLU
GLU
23
23
-0.099
0.011
1.252
1.153
N
1
B
B
CD
OE2
GLU
GLU
23
23
0.104
0.011
1.252
1.356
N
1
A
A
O
O
HOH
HOH
246
275
1.98
1_555
2_556
1
A
B
O
O
HOH
HOH
310
200
2.01
1_555
2_546
16.675
0.26
0.00
-0.31
-0.23
0.00
0.13
0.977
0.962
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.17701
0.12870
0.13114
1.35
43.94
1558
29520
5.0
98.20
2.038
0.036
RANDOM
1
THROUGHOUT
MOLECULAR REPLACEMENT
0.051
0.053
0.80
0.80
1.20
6RNX
MAXIMUM LIKELIHOOD
MASK
1.35
43.94
255
1327
18
0
1054
0.029
0.019
1147
0.002
0.020
1132
2.375
2.021
1561
1.477
3.000
2626
4.242
5.000
150
31.905
23.214
56
13.594
15.000
222
23.005
15.000
15
0.159
0.200
189
0.013
0.020
1266
0.005
0.020
221
1.694
1.082
551
1.690
1.081
550
1.909
1.632
691
1.909
1.632
692
3.897
1.613
596
3.903
1.611
596
4.550
2.242
861
6.156
17.704
1420
6.154
17.716
1421
5.473
3.000
2279
38.979
5.000
156
12.856
5.000
2360
0.280
0.242
1.385
118
2085
20
95.66
1.35
44
6RNZ
31092
0.048
1
10.9
2.8
98.3
1.35
1.4
2968
1
refinement
REFMAC
5.8.0158
data reduction
XDS
data scaling
autoPROC
phasing
MOLREP
N
Crystal structure of the N-terminal HTH DNA-binding domain of the essential repressor DdrO from radiation-resistant Deinococcus bacteria (Deinococcus deserti)
1
N
N
1
N
N
2
N
N
2
N
N
2
N
N
3
N
N
3
N
N
A
LYS
2
A
LYS
2
HELX_P
A
ARG
14
A
ARG
14
1
AA1
13
A
ARG
17
A
ARG
17
HELX_P
A
GLN
26
A
GLN
26
1
AA2
10
A
SER
28
A
SER
28
HELX_P
A
ARG
37
A
ARG
37
1
AA3
10
A
SER
43
A
SER
43
HELX_P
A
TYR
54
A
TYR
54
1
AA4
12
A
THR
57
A
THR
57
HELX_P
A
GLU
63
A
GLU
63
1
AA5
7
B
LYS
2
B
LYS
2
HELX_P
B
ARG
14
B
ARG
14
1
AA6
13
B
ARG
17
B
ARG
17
HELX_P
B
GLN
26
B
GLN
26
1
AA7
10
B
SER
28
B
SER
28
HELX_P
B
GLY
38
B
GLY
38
1
AA8
11
B
SER
43
B
SER
43
HELX_P
B
TYR
54
B
TYR
54
1
AA9
12
B
THR
57
B
THR
57
HELX_P
B
GLU
63
B
GLU
63
1
AB1
7
DNA BINDING PROTEIN
----, DNA BINDING PROTEIN
DDROC_DEIDV
UNP
1
1
C1CYP4
MKLHERLRELRSERGLRLKDVAEVAQISVPYLSDLERGRTNPSLETLQTLAGAYNITVHDLLEGVE
1
66
6RNZ
1
66
C1CYP4
A
1
1
66
1
66
6RNZ
1
66
C1CYP4
B
1
1
66
binding site for residue GOL A 100
A
GOL
100
Software
3
binding site for residue GOL A 101
A
GOL
101
Software
9
binding site for residue GOL A 102
A
GOL
102
Software
4
A
GLY
15
A
GLY
15
3
1_555
A
LEU
16
A
LEU
16
3
1_555
A
HOH
230
F
HOH
3
1_555
A
LEU
44
A
LEU
44
9
1_555
A
GLN
48
A
GLN
48
9
1_555
A
VAL
58
A
VAL
58
9
1_555
A
HIS
59
A
HIS
59
9
1_555
A
HOH
204
F
HOH
9
1_555
A
HOH
246
F
HOH
9
1_555
B
VAL
65
B
VAL
65
9
1_555
B
GLU
66
B
GLU
66
9
1_555
B
HOH
105
G
HOH
9
1_555
A
SER
43
A
SER
43
4
1_555
A
THR
46
A
THR
46
4
1_555
A
HOH
203
F
HOH
4
1_555
A
HOH
218
F
HOH
4
1_555
4
P 1 21 1