0.019932 0.000000 0.000000 -0.000000 0.019932 0.000000 0.000000 -0.000000 0.019140 0.000000 0.000000 0.000000 0000-0002-8174-0769 Shrive, A.K. 0000-0002-2180-5110 Greenhough, T.J. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.000 90.000 90.000 50.170 50.170 52.247 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking Ca 2 40.078 CALCIUM ION non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N CA N 75 N N N 76 R C N 77 N C N 78 N O N 79 N C N 80 N S N 81 N O N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N N N 90 S C N 91 N C N 92 N O N 93 N C N 94 N C N 95 N C N 96 N O N 97 N N N 98 N O N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N N N 110 S C N 111 N C N 112 N O N 113 N C N 114 N C N 115 N C N 116 N O N 117 N O N 118 N O N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N H N 128 N N N 129 N C N 130 N C N 131 N O N 132 N O N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N O N 139 N H N 140 N H N 141 N N N 142 S C N 143 N C N 144 N O N 145 S C N 146 N C N 147 N C N 148 N C N 149 N O N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N N N 164 S C N 165 N C N 166 N O N 167 N C N 168 N C N 169 N C N 170 N C N 171 N O N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N N N 186 S C N 187 N C N 188 N O N 189 N C N 190 N C N 191 N C N 192 N C N 193 N N N 194 N O N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N N N 211 S C N 212 N C N 213 N O N 214 N C N 215 N C N 216 N S N 217 N C N 218 N O N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N N N 231 S C N 232 N C N 233 N O N 234 N C Y 235 N C Y 236 N C Y 237 N C Y 238 N C Y 239 N C Y 240 N C N 241 N O N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N N N 254 S C N 255 N C N 256 N O N 257 N C N 258 N C N 259 N C N 260 N O N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N N N 271 S C N 272 N C N 273 N O N 274 N C N 275 N O N 276 N O N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N N N 285 S C N 286 N C N 287 N O N 288 R C N 289 N O N 290 N C N 291 N O N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N N N 302 S C N 303 N C N 304 N O N 305 N C Y 306 N C Y 307 N C Y 308 N C Y 309 N N Y 310 N C Y 311 N C Y 312 N C Y 313 N C Y 314 N C N 315 N O N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N H N 327 N H N 328 N N N 329 S C N 330 N C N 331 N O N 332 N C Y 333 N C Y 334 N C Y 335 N C Y 336 N C Y 337 N C Y 338 N C N 339 N O N 340 N O N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N N N 353 S C N 354 N C N 355 N O N 356 N C N 357 N C N 358 N C N 359 N O N 360 N H N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N doub N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N doub N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N doub N 223 N sing N 224 N sing N 225 N sing N 226 N sing Y 227 N doub Y 228 N sing Y 229 N sing N 230 N sing Y 231 N doub N 232 N sing Y 233 N doub N 234 N sing Y 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N doub N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N doub N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N doub N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N doub N 292 N sing N 293 N sing N 294 N sing N 295 N sing Y 296 N doub Y 297 N sing Y 298 N sing N 299 N sing Y 300 N doub Y 301 N sing Y 302 N sing N 303 N sing Y 304 N sing Y 305 N doub N 306 N sing Y 307 N doub N 308 N sing Y 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N doub N 320 N sing N 321 N sing N 322 N sing N 323 N sing Y 324 N doub Y 325 N sing Y 326 N sing N 327 N sing Y 328 N doub N 329 N sing Y 330 N doub N 331 N sing Y 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N doub N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing US J.Biol.Chem. JBCHA3 0071 1083-351X 294 17155 17165 10.1074/jbc.RA119.010271 31562242 Atomic-resolution crystal structures of the immune protein conglutinin from cow reveal specific interactions of its binding site withN-acetylglucosamine. 2019 10.2210/pdb6ryg/pdb pdb_00006ryg 100 1 N CCD 2007-12-12 ADSC QUANTUM 315 SINGLE WAVELENGTH M x-ray 1 0.92 1.0 I03 Diamond 0.92 SYNCHROTRON DIAMOND BEAMLINE I03 14082.562 Conglutinin carbohydrate recognition domain 1 man polymer 40.078 CALCIUM ION 1 syn non-polymer 18.015 water 141 nat water no no KAVLFPDGQAVGEKIFKTAGAVKSYSDAEQLCREAKGQLASPRSSAENEAVTQMVRAQEKNAYLSMNDISTEGRFTYPTG EILVYSNWADGEPNNSDEGQPENCVEIFPDGKWNDVPCSKQLLVICEF KAVLFPDGQAVGEKIFKTAGAVKSYSDAEQLCREAKGQLASPRSSAENEAVTQMVRAQEKNAYLSMNDISTEGRFTYPTG EILVYSNWADGEPNNSDEGQPENCVEIFPDGKWNDVPCSKQLLVICEF A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Bovine sample 1 128 CGN1 9913 Bos taurus 469008 Escherichia coli BL21(DE3) plasmid Biological sequence 1 2.33 47.31 0.150 VAPOR DIFFUSION, SITTING DROP 8.0 2.5 M ammonium sulfate, 0.1 M tris 293 citation citation_author chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model repository Initial release Database references Data collection Database references Refinement description 1 0 2019-10-09 1 1 2019-11-20 1 2 2024-01-24 _citation.journal_volume _citation.page_first _citation.page_last _citation_author.identifier_ORCID _database_2.pdbx_DOI _database_2.pdbx_database_accession Same protein with ethylene glycol bound; Same protein with GlcNAc bound Same protein with GlcNAc-alpha-1-phosphate bound N PDBE Y PDBE 2019-06-10 REL REL CA CA SUBJECT OF INVESTIGATION CA CALCIUM ION HOH water Y 6RYM PDB experimental model CA 400 2 CA CA 400 A HOH 111 3 HOH HOH 501 A HOH 2 3 HOH HOH 502 A HOH 63 3 HOH HOH 503 A HOH 121 3 HOH HOH 504 A HOH 35 3 HOH HOH 505 A HOH 58 3 HOH HOH 506 A HOH 78 3 HOH HOH 507 A HOH 60 3 HOH HOH 508 A HOH 37 3 HOH HOH 509 A HOH 12 3 HOH HOH 510 A HOH 130 3 HOH HOH 511 A HOH 26 3 HOH HOH 512 A HOH 16 3 HOH HOH 513 A HOH 107 3 HOH HOH 514 A HOH 17 3 HOH HOH 515 A HOH 82 3 HOH HOH 516 A HOH 44 3 HOH HOH 517 A HOH 109 3 HOH HOH 518 A HOH 34 3 HOH HOH 519 A HOH 19 3 HOH HOH 520 A HOH 68 3 HOH HOH 521 A HOH 55 3 HOH HOH 522 A HOH 98 3 HOH HOH 523 A HOH 25 3 HOH HOH 524 A HOH 71 3 HOH HOH 525 A HOH 52 3 HOH HOH 526 A HOH 101 3 HOH HOH 527 A HOH 48 3 HOH HOH 528 A HOH 15 3 HOH HOH 529 A HOH 38 3 HOH HOH 530 A HOH 59 3 HOH HOH 531 A HOH 75 3 HOH HOH 532 A HOH 1 3 HOH HOH 533 A HOH 141 3 HOH HOH 534 A HOH 4 3 HOH HOH 535 A HOH 122 3 HOH HOH 536 A HOH 50 3 HOH HOH 537 A HOH 116 3 HOH HOH 538 A HOH 64 3 HOH HOH 539 A HOH 11 3 HOH HOH 540 A HOH 23 3 HOH HOH 541 A HOH 9 3 HOH HOH 542 A HOH 54 3 HOH HOH 543 A HOH 85 3 HOH HOH 544 A HOH 32 3 HOH HOH 545 A HOH 128 3 HOH HOH 546 A HOH 22 3 HOH HOH 547 A HOH 90 3 HOH HOH 548 A HOH 7 3 HOH HOH 549 A HOH 97 3 HOH HOH 550 A HOH 28 3 HOH HOH 551 A HOH 3 3 HOH HOH 552 A HOH 51 3 HOH HOH 553 A HOH 95 3 HOH HOH 554 A HOH 5 3 HOH HOH 555 A HOH 114 3 HOH HOH 556 A HOH 103 3 HOH HOH 557 A HOH 45 3 HOH HOH 558 A HOH 36 3 HOH HOH 559 A HOH 20 3 HOH HOH 560 A HOH 126 3 HOH HOH 561 A HOH 42 3 HOH HOH 562 A HOH 6 3 HOH HOH 563 A HOH 74 3 HOH HOH 564 A HOH 29 3 HOH HOH 565 A HOH 61 3 HOH HOH 566 A HOH 92 3 HOH HOH 567 A HOH 53 3 HOH HOH 568 A HOH 80 3 HOH HOH 569 A HOH 40 3 HOH HOH 570 A HOH 39 3 HOH HOH 571 A HOH 65 3 HOH HOH 572 A HOH 57 3 HOH HOH 573 A HOH 62 3 HOH HOH 574 A HOH 49 3 HOH HOH 575 A HOH 136 3 HOH HOH 576 A HOH 10 3 HOH HOH 577 A HOH 30 3 HOH HOH 578 A HOH 79 3 HOH HOH 579 A HOH 99 3 HOH HOH 580 A HOH 31 3 HOH HOH 581 A HOH 77 3 HOH HOH 582 A HOH 41 3 HOH HOH 583 A HOH 13 3 HOH HOH 584 A HOH 21 3 HOH HOH 585 A HOH 83 3 HOH HOH 586 A HOH 86 3 HOH HOH 587 A HOH 81 3 HOH HOH 588 A HOH 135 3 HOH HOH 589 A HOH 24 3 HOH HOH 590 A HOH 8 3 HOH HOH 591 A HOH 72 3 HOH HOH 592 A HOH 67 3 HOH HOH 593 A HOH 33 3 HOH HOH 594 A HOH 18 3 HOH HOH 595 A HOH 66 3 HOH HOH 596 A HOH 119 3 HOH HOH 597 A HOH 124 3 HOH HOH 598 A HOH 43 3 HOH HOH 599 A HOH 46 3 HOH HOH 600 A HOH 73 3 HOH HOH 601 A HOH 139 3 HOH HOH 602 A HOH 76 3 HOH HOH 603 A HOH 69 3 HOH HOH 604 A HOH 14 3 HOH HOH 605 A HOH 104 3 HOH HOH 606 A HOH 56 3 HOH HOH 607 A HOH 70 3 HOH HOH 608 A HOH 131 3 HOH HOH 609 A HOH 118 3 HOH HOH 610 A HOH 27 3 HOH HOH 611 A HOH 134 3 HOH HOH 612 A HOH 117 3 HOH HOH 613 A HOH 91 3 HOH HOH 614 A HOH 140 3 HOH HOH 615 A HOH 89 3 HOH HOH 616 A HOH 87 3 HOH HOH 617 A HOH 129 3 HOH HOH 618 A HOH 132 3 HOH HOH 619 A HOH 133 3 HOH HOH 620 A HOH 47 3 HOH HOH 621 A HOH 112 3 HOH HOH 622 A HOH 138 3 HOH HOH 623 A HOH 113 3 HOH HOH 624 A HOH 120 3 HOH HOH 625 A HOH 137 3 HOH HOH 626 A HOH 125 3 HOH HOH 627 A HOH 106 3 HOH HOH 628 A HOH 127 3 HOH HOH 629 A HOH 96 3 HOH HOH 630 A HOH 110 3 HOH HOH 631 A HOH 94 3 HOH HOH 632 A HOH 84 3 HOH HOH 633 A HOH 102 3 HOH HOH 634 A HOH 88 3 HOH HOH 635 A HOH 105 3 HOH HOH 636 A HOH 108 3 HOH HOH 637 A HOH 123 3 HOH HOH 638 A HOH 100 3 HOH HOH 639 A HOH 115 3 HOH HOH 640 A HOH 93 3 HOH HOH 641 A n 1 224 A n 2 225 A n 3 226 A n 4 227 A n 5 228 A n 6 229 A ASP 230 n 7 ASP 230 A GLY 231 n 8 GLY 231 A GLN 232 n 9 GLN 232 A ALA 233 n 10 ALA 233 A VAL 234 n 11 VAL 234 A GLY 235 n 12 GLY 235 A GLU 236 n 13 GLU 236 A LYS 237 n 14 LYS 237 A ILE 238 n 15 ILE 238 A PHE 239 n 16 PHE 239 A LYS 240 n 17 LYS 240 A THR 241 n 18 THR 241 A ALA 242 n 19 ALA 242 A GLY 243 n 20 GLY 243 A ALA 244 n 21 ALA 244 A VAL 245 n 22 VAL 245 A LYS 246 n 23 LYS 246 A SER 247 n 24 SER 247 A TYR 248 n 25 TYR 248 A SER 249 n 26 SER 249 A ASP 250 n 27 ASP 250 A ALA 251 n 28 ALA 251 A GLU 252 n 29 GLU 252 A GLN 253 n 30 GLN 253 A LEU 254 n 31 LEU 254 A CYS 255 n 32 CYS 255 A ARG 256 n 33 ARG 256 A GLU 257 n 34 GLU 257 A ALA 258 n 35 ALA 258 A LYS 259 n 36 LYS 259 A GLY 260 n 37 GLY 260 A GLN 261 n 38 GLN 261 A LEU 262 n 39 LEU 262 A ALA 263 n 40 ALA 263 A SER 264 n 41 SER 264 A PRO 265 n 42 PRO 265 A ARG 266 n 43 ARG 266 A SER 267 n 44 SER 267 A SER 268 n 45 SER 268 A ALA 269 n 46 ALA 269 A GLU 270 n 47 GLU 270 A ASN 271 n 48 ASN 271 A GLU 272 n 49 GLU 272 A ALA 273 n 50 ALA 273 A VAL 274 n 51 VAL 274 A THR 275 n 52 THR 275 A GLN 276 n 53 GLN 276 A MET 277 n 54 MET 277 A VAL 278 n 55 VAL 278 A ARG 279 n 56 ARG 279 A ALA 280 n 57 ALA 280 A GLN 281 n 58 GLN 281 A GLU 282 n 59 GLU 282 A LYS 283 n 60 LYS 283 A ASN 284 n 61 ASN 284 A ALA 285 n 62 ALA 285 A TYR 286 n 63 TYR 286 A LEU 287 n 64 LEU 287 A SER 288 n 65 SER 288 A MET 289 n 66 MET 289 A ASN 290 n 67 ASN 290 A ASP 291 n 68 ASP 291 A ILE 292 n 69 ILE 292 A SER 293 n 70 SER 293 A THR 294 n 71 THR 294 A GLU 295 n 72 GLU 295 A GLY 296 n 73 GLY 296 A ARG 297 n 74 ARG 297 A PHE 298 n 75 PHE 298 A THR 299 n 76 THR 299 A TYR 300 n 77 TYR 300 A PRO 301 n 78 PRO 301 A THR 302 n 79 THR 302 A GLY 303 n 80 GLY 303 A GLU 304 n 81 GLU 304 A ILE 305 n 82 ILE 305 A LEU 306 n 83 LEU 306 A VAL 307 n 84 VAL 307 A TYR 308 n 85 TYR 308 A SER 309 n 86 SER 309 A ASN 310 n 87 ASN 310 A TRP 311 n 88 TRP 311 A ALA 312 n 89 ALA 312 A ASP 313 n 90 ASP 313 A GLY 314 n 91 GLY 314 A GLU 315 n 92 GLU 315 A PRO 316 n 93 PRO 316 A ASN 317 n 94 ASN 317 A n 95 318 A n 96 319 A n 97 320 A n 98 321 A n 99 322 A n 100 323 A PRO 324 n 101 PRO 324 A GLU 325 n 102 GLU 325 A ASN 326 n 103 ASN 326 A CYS 327 n 104 CYS 327 A VAL 328 n 105 VAL 328 A GLU 329 n 106 GLU 329 A ILE 330 n 107 ILE 330 A PHE 331 n 108 PHE 331 A PRO 332 n 109 PRO 332 A ASP 333 n 110 ASP 333 A GLY 334 n 111 GLY 334 A LYS 335 n 112 LYS 335 A TRP 336 n 113 TRP 336 A ASN 337 n 114 ASN 337 A ASP 338 n 115 ASP 338 A VAL 339 n 116 VAL 339 A PRO 340 n 117 PRO 340 A CYS 341 n 118 CYS 341 A SER 342 n 119 SER 342 A LYS 343 n 120 LYS 343 A GLN 344 n 121 GLN 344 A LEU 345 n 122 LEU 345 A LEU 346 n 123 LEU 346 A VAL 347 n 124 VAL 347 A ILE 348 n 125 ILE 348 A CYS 349 n 126 CYS 349 A GLU 350 n 127 GLU 350 A PHE 351 n 128 PHE 351 A 10.21252/aram-j439 diffraction image data software_defined_assembly PISA 1 monomeric From known literature, active molecule is composed of four trimeric units - trimeric unit is composed of N-terminal domain, collagen-like helix, alpha-helical coiled-coil and 3 carbohydrate recognition domains. As the structure only contains a carbohydrate recognition domain, it is only a monomer. none 90 -12 6220 A GLU 315 A OE1 GLU 92 1_555 A CA 400 B CA CA 1_555 A ASN 317 A OD1 ASN 94 1_555 74.7 A GLU 315 A OE1 GLU 92 1_555 A CA 400 B CA CA 1_555 A GLU 325 A OE1 GLU 102 1_555 146.8 A ASN 317 A OD1 ASN 94 1_555 A CA 400 B CA CA 1_555 A GLU 325 A OE1 GLU 102 1_555 74.7 A GLU 315 A OE1 GLU 92 1_555 A CA 400 B CA CA 1_555 A ASN 337 A OD1 ASN 114 1_555 70.2 A ASN 317 A OD1 ASN 94 1_555 A CA 400 B CA CA 1_555 A ASN 337 A OD1 ASN 114 1_555 140.5 A GLU 325 A OE1 GLU 102 1_555 A CA 400 B CA CA 1_555 A ASN 337 A OD1 ASN 114 1_555 142.9 A GLU 315 A OE1 GLU 92 1_555 A CA 400 B CA CA 1_555 A ASP 338 A O ASP 115 1_555 133.3 A ASN 317 A OD1 ASN 94 1_555 A CA 400 B CA CA 1_555 A ASP 338 A O ASP 115 1_555 143.2 A GLU 325 A OE1 GLU 102 1_555 A CA 400 B CA CA 1_555 A ASP 338 A O ASP 115 1_555 71.1 A ASN 337 A OD1 ASN 114 1_555 A CA 400 B CA CA 1_555 A ASP 338 A O ASP 115 1_555 76.2 A GLU 315 A OE1 GLU 92 1_555 A CA 400 B CA CA 1_555 A ASP 338 A OD1 ASP 115 1_555 77.1 A ASN 317 A OD1 ASN 94 1_555 A CA 400 B CA CA 1_555 A ASP 338 A OD1 ASP 115 1_555 84.6 A GLU 325 A OE1 GLU 102 1_555 A CA 400 B CA CA 1_555 A ASP 338 A OD1 ASP 115 1_555 87.7 A ASN 337 A OD1 ASN 114 1_555 A CA 400 B CA CA 1_555 A ASP 338 A OD1 ASP 115 1_555 104.2 A ASP 338 A O ASP 115 1_555 A CA 400 B CA CA 1_555 A ASP 338 A OD1 ASP 115 1_555 80.9 A GLU 315 A OE1 GLU 92 1_555 A CA 400 B CA CA 1_555 A HOH 530 C O HOH 1_555 80.4 A ASN 317 A OD1 ASN 94 1_555 A CA 400 B CA CA 1_555 A HOH 530 C O HOH 1_555 74.9 A GLU 325 A OE1 GLU 102 1_555 A CA 400 B CA CA 1_555 A HOH 530 C O HOH 1_555 103.5 A ASN 337 A OD1 ASN 114 1_555 A CA 400 B CA CA 1_555 A HOH 530 C O HOH 1_555 81.8 A ASP 338 A O ASP 115 1_555 A CA 400 B CA CA 1_555 A HOH 530 C O HOH 1_555 126.0 A ASP 338 A OD1 ASP 115 1_555 A CA 400 B CA CA 1_555 A HOH 530 C O HOH 1_555 152.8 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N GLN 232 A N GLN 9 A O PHE 239 A O PHE 16 A N LYS 240 A N LYS 17 A O CYS 349 A O CYS 126 A O GLU 350 A O GLU 127 A N GLN 261 A N GLN 38 A N ALA 285 A N ALA 62 A O ILE 330 A O ILE 107 A N GLU 329 A N GLU 106 A O ASN 337 A O ASN 114 1 A LYS 224 A LYS 1 1 Y 1 A ALA 225 A ALA 2 1 Y 1 A VAL 226 A VAL 3 1 Y 1 A LEU 227 A LEU 4 1 Y 1 A PHE 228 A PHE 5 1 Y 1 A PRO 229 A PRO 6 1 Y 1 A ASN 318 A ASN 95 1 Y 1 A SER 319 A SER 96 1 Y 1 A ASP 320 A ASP 97 1 Y 1 A GLU 321 A GLU 98 1 Y 1 A GLY 322 A GLY 99 1 Y 1 A GLN 323 A GLN 100 1 Y 1 A ASN 310 -146.34 51.08 111.390 14.1480 6.210 -0.2500 0.0000 0.0000 -0.2500 0.0000 0.5000 0.9740 0.9760 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : REFINED INDIVIDUALLY 0.1388 0.1347 0.1349 0.9740 50.0000 3086 58175 5.0000 81.1300 0.4610 0.0110 0.0209 RANDOM 1 FREE R-VALUE 0.000 MOLECULAR REPLACEMENT 0.0210 0.0200 0.8000 0.8000 1.2000 6RYM 0.9740 50.0000 141 1038 16.95 25.55 1 0 896 116 0.010 0.013 921 0.001 0.018 812 1.654 1.648 1248 1.568 1.578 1904 6.370 5.000 116 33.741 24.694 49 11.609 15.000 154 13.245 15.000 4 0.088 0.200 119 0.009 0.020 1053 0.001 0.020 179 7.733 3.000 1733 0.4610 0.0000 0.4980 1.0000 35 667 702 20 12.6200 0.974 50.170 6RYG 61295 0.050 0.059 0.050 1 7.000 22.900 471902 7.700 81.200 0.216 0.970 1.020 3.200 4289 1888 0.315 0.216 1 2.300 2.300 20.500 0.123 1.020 1.080 5.700 20331 5926 0.166 0.123 1 5.200 3.400 55.700 0.095 1.080 1.150 6.600 41006 8123 0.121 0.095 1 10.500 5.000 81.300 0.078 1.150 1.250 7.400 66785 9352 0.097 0.078 1 16.800 7.100 99.600 0.060 1.250 1.370 9.400 63202 8580 0.074 0.060 1 21.600 7.400 100.000 0.057 1.370 1.530 9.600 60385 7810 0.069 0.057 1 25.900 7.700 100.000 0.054 1.530 1.760 10.600 69126 6874 0.062 0.054 1 32.600 10.100 100.000 0.051 1.760 2.160 10.900 74548 5841 0.060 0.051 1 41.800 12.800 100.000 0.047 2.160 3.050 12.400 53973 4527 0.055 0.047 1 42.000 11.900 100.000 0.045 3.050 52.247 12.600 18257 2374 0.059 0.045 1 33.000 7.700 93.900 data reduction MOSFLM data scaling SCALA 3.1.4 refinement REFMAC 5.8.0238 data extraction PDB_EXTRACT 3.25 phasing REFMAC N native structure of conglutinin carbohydrate recognition domain 1 N N 2 N N 3 N N A SER 247 A SER 24 HELX_P A ALA 258 A ALA 35 1 AA1 12 A SER 267 A SER 44 HELX_P A GLU 282 A GLU 59 1 AA2 16 disulf 2.065 A CYS 255 A SG CYS 32 1_555 A CYS 349 A SG CYS 126 1_555 disulf 2.031 A CYS 327 A SG CYS 104 1_555 A CYS 341 A SG CYS 118 1_555 metalc 2.487 A GLU 315 A OE1 GLU 92 1_555 A CA 400 B CA CA 1_555 metalc 2.438 A ASN 317 A OD1 ASN 94 1_555 A CA 400 B CA CA 1_555 metalc 2.431 A GLU 325 A OE1 GLU 102 1_555 A CA 400 B CA CA 1_555 metalc 2.419 A ASN 337 A OD1 ASN 114 1_555 A CA 400 B CA CA 1_555 metalc 2.560 A ASP 338 A O ASP 115 1_555 A CA 400 B CA CA 1_555 metalc 2.273 A ASP 338 A OD1 ASP 115 1_555 A CA 400 B CA CA 1_555 metalc 2.456 A CA 400 B CA CA 1_555 A HOH 530 C O HOH 1_555 IMMUNE SYSTEM carbohydrate recognition domain, lectin, collectin, sugar binding protein, IMMUNE SYSTEM A GLU 315 A GLU 92 1 A PRO 316 A PRO 93 -11.77 CONG_BOVIN UNP 1 244 P23805 KAVLFPDGQAVGEKIFKTAGAVKSYSDAEQLCREAKGQLASPRSSAENEAVTQMVRAQEKNAYLSMNDISTEGRFTYPTG EILVYSNWADGEPNNSDEGQPENCVEIFPDGKWNDVPCSKQLLVICEF 244 371 6RYG 224 351 P23805 A 1 1 128 4 3 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A GLN 232 A GLN 9 A VAL 234 A VAL 11 A LYS 237 A LYS 14 A LYS 246 A LYS 23 A LEU 345 A LEU 122 A PHE 351 A PHE 128 A GLN 261 A GLN 38 A LEU 262 A LEU 39 A ALA 285 A ALA 62 A TYR 286 A TYR 63 A CYS 327 A CYS 104 A ILE 330 A ILE 107 A TRP 336 A TRP 113 A VAL 339 A VAL 116 binding site for residue CA A 400 A CA 400 Software 6 A GLU 315 A GLU 92 6 1_555 A ASN 317 A ASN 94 6 1_555 A GLU 325 A GLU 102 6 1_555 A ASN 337 A ASN 114 6 1_555 A ASP 338 A ASP 115 6 1_555 A HOH 530 C HOH 6 1_555 78 P 43