0.019932
0.000000
0.000000
-0.000000
0.019932
0.000000
0.000000
-0.000000
0.019140
0.000000
0.000000
0.000000
0000-0002-8174-0769
Shrive, A.K.
0000-0002-2180-5110
Greenhough, T.J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.000
90.000
90.000
50.170
50.170
52.247
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Ca 2
40.078
CALCIUM ION
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
CA
N
75
N
N
N
76
R
C
N
77
N
C
N
78
N
O
N
79
N
C
N
80
N
S
N
81
N
O
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
N
N
90
S
C
N
91
N
C
N
92
N
O
N
93
N
C
N
94
N
C
N
95
N
C
N
96
N
O
N
97
N
N
N
98
N
O
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
N
N
110
S
C
N
111
N
C
N
112
N
O
N
113
N
C
N
114
N
C
N
115
N
C
N
116
N
O
N
117
N
O
N
118
N
O
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
N
N
129
N
C
N
130
N
C
N
131
N
O
N
132
N
O
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
O
N
139
N
H
N
140
N
H
N
141
N
N
N
142
S
C
N
143
N
C
N
144
N
O
N
145
S
C
N
146
N
C
N
147
N
C
N
148
N
C
N
149
N
O
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
N
N
164
S
C
N
165
N
C
N
166
N
O
N
167
N
C
N
168
N
C
N
169
N
C
N
170
N
C
N
171
N
O
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
N
N
186
S
C
N
187
N
C
N
188
N
O
N
189
N
C
N
190
N
C
N
191
N
C
N
192
N
C
N
193
N
N
N
194
N
O
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
N
N
211
S
C
N
212
N
C
N
213
N
O
N
214
N
C
N
215
N
C
N
216
N
S
N
217
N
C
N
218
N
O
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
Y
235
N
C
Y
236
N
C
Y
237
N
C
Y
238
N
C
Y
239
N
C
Y
240
N
C
N
241
N
O
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
N
N
254
S
C
N
255
N
C
N
256
N
O
N
257
N
C
N
258
N
C
N
259
N
C
N
260
N
O
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
N
N
271
S
C
N
272
N
C
N
273
N
O
N
274
N
C
N
275
N
O
N
276
N
O
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
N
N
285
S
C
N
286
N
C
N
287
N
O
N
288
R
C
N
289
N
O
N
290
N
C
N
291
N
O
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
N
N
302
S
C
N
303
N
C
N
304
N
O
N
305
N
C
Y
306
N
C
Y
307
N
C
Y
308
N
C
Y
309
N
N
Y
310
N
C
Y
311
N
C
Y
312
N
C
Y
313
N
C
Y
314
N
C
N
315
N
O
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
N
N
329
S
C
N
330
N
C
N
331
N
O
N
332
N
C
Y
333
N
C
Y
334
N
C
Y
335
N
C
Y
336
N
C
Y
337
N
C
Y
338
N
C
N
339
N
O
N
340
N
O
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
N
N
353
S
C
N
354
N
C
N
355
N
O
N
356
N
C
N
357
N
C
N
358
N
C
N
359
N
O
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
doub
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
doub
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
doub
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
Y
227
N
doub
Y
228
N
sing
Y
229
N
sing
N
230
N
sing
Y
231
N
doub
N
232
N
sing
Y
233
N
doub
N
234
N
sing
Y
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
doub
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
doub
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
doub
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
doub
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
Y
296
N
doub
Y
297
N
sing
Y
298
N
sing
N
299
N
sing
Y
300
N
doub
Y
301
N
sing
Y
302
N
sing
N
303
N
sing
Y
304
N
sing
Y
305
N
doub
N
306
N
sing
Y
307
N
doub
N
308
N
sing
Y
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
doub
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
Y
324
N
doub
Y
325
N
sing
Y
326
N
sing
N
327
N
sing
Y
328
N
doub
N
329
N
sing
Y
330
N
doub
N
331
N
sing
Y
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
doub
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
US
J.Biol.Chem.
JBCHA3
0071
1083-351X
294
17155
17165
10.1074/jbc.RA119.010271
31562242
Atomic-resolution crystal structures of the immune protein conglutinin from cow reveal specific interactions of its binding site withN-acetylglucosamine.
2019
10.2210/pdb6ryg/pdb
pdb_00006ryg
100
1
N
CCD
2007-12-12
ADSC QUANTUM 315
SINGLE WAVELENGTH
M
x-ray
1
0.92
1.0
I03
Diamond
0.92
SYNCHROTRON
DIAMOND BEAMLINE I03
14082.562
Conglutinin
carbohydrate recognition domain
1
man
polymer
40.078
CALCIUM ION
1
syn
non-polymer
18.015
water
141
nat
water
no
no
KAVLFPDGQAVGEKIFKTAGAVKSYSDAEQLCREAKGQLASPRSSAENEAVTQMVRAQEKNAYLSMNDISTEGRFTYPTG
EILVYSNWADGEPNNSDEGQPENCVEIFPDGKWNDVPCSKQLLVICEF
KAVLFPDGQAVGEKIFKTAGAVKSYSDAEQLCREAKGQLASPRSSAENEAVTQMVRAQEKNAYLSMNDISTEGRFTYPTG
EILVYSNWADGEPNNSDEGQPENCVEIFPDGKWNDVPCSKQLLVICEF
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Bovine
sample
1
128
CGN1
9913
Bos taurus
469008
Escherichia coli BL21(DE3)
plasmid
Biological sequence
1
2.33
47.31
0.150
VAPOR DIFFUSION, SITTING DROP
8.0
2.5 M ammonium sulfate, 0.1 M tris
293
citation
citation_author
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
repository
Initial release
Database references
Data collection
Database references
Refinement description
1
0
2019-10-09
1
1
2019-11-20
1
2
2024-01-24
_citation.journal_volume
_citation.page_first
_citation.page_last
_citation_author.identifier_ORCID
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
Same protein with ethylene glycol bound;
Same protein with GlcNAc bound
Same protein with GlcNAc-alpha-1-phosphate bound
N
PDBE
Y
PDBE
2019-06-10
REL
REL
CA
CA
SUBJECT OF INVESTIGATION
CA
CALCIUM ION
HOH
water
Y
6RYM
PDB
experimental model
CA
400
2
CA
CA
400
A
HOH
111
3
HOH
HOH
501
A
HOH
2
3
HOH
HOH
502
A
HOH
63
3
HOH
HOH
503
A
HOH
121
3
HOH
HOH
504
A
HOH
35
3
HOH
HOH
505
A
HOH
58
3
HOH
HOH
506
A
HOH
78
3
HOH
HOH
507
A
HOH
60
3
HOH
HOH
508
A
HOH
37
3
HOH
HOH
509
A
HOH
12
3
HOH
HOH
510
A
HOH
130
3
HOH
HOH
511
A
HOH
26
3
HOH
HOH
512
A
HOH
16
3
HOH
HOH
513
A
HOH
107
3
HOH
HOH
514
A
HOH
17
3
HOH
HOH
515
A
HOH
82
3
HOH
HOH
516
A
HOH
44
3
HOH
HOH
517
A
HOH
109
3
HOH
HOH
518
A
HOH
34
3
HOH
HOH
519
A
HOH
19
3
HOH
HOH
520
A
HOH
68
3
HOH
HOH
521
A
HOH
55
3
HOH
HOH
522
A
HOH
98
3
HOH
HOH
523
A
HOH
25
3
HOH
HOH
524
A
HOH
71
3
HOH
HOH
525
A
HOH
52
3
HOH
HOH
526
A
HOH
101
3
HOH
HOH
527
A
HOH
48
3
HOH
HOH
528
A
HOH
15
3
HOH
HOH
529
A
HOH
38
3
HOH
HOH
530
A
HOH
59
3
HOH
HOH
531
A
HOH
75
3
HOH
HOH
532
A
HOH
1
3
HOH
HOH
533
A
HOH
141
3
HOH
HOH
534
A
HOH
4
3
HOH
HOH
535
A
HOH
122
3
HOH
HOH
536
A
HOH
50
3
HOH
HOH
537
A
HOH
116
3
HOH
HOH
538
A
HOH
64
3
HOH
HOH
539
A
HOH
11
3
HOH
HOH
540
A
HOH
23
3
HOH
HOH
541
A
HOH
9
3
HOH
HOH
542
A
HOH
54
3
HOH
HOH
543
A
HOH
85
3
HOH
HOH
544
A
HOH
32
3
HOH
HOH
545
A
HOH
128
3
HOH
HOH
546
A
HOH
22
3
HOH
HOH
547
A
HOH
90
3
HOH
HOH
548
A
HOH
7
3
HOH
HOH
549
A
HOH
97
3
HOH
HOH
550
A
HOH
28
3
HOH
HOH
551
A
HOH
3
3
HOH
HOH
552
A
HOH
51
3
HOH
HOH
553
A
HOH
95
3
HOH
HOH
554
A
HOH
5
3
HOH
HOH
555
A
HOH
114
3
HOH
HOH
556
A
HOH
103
3
HOH
HOH
557
A
HOH
45
3
HOH
HOH
558
A
HOH
36
3
HOH
HOH
559
A
HOH
20
3
HOH
HOH
560
A
HOH
126
3
HOH
HOH
561
A
HOH
42
3
HOH
HOH
562
A
HOH
6
3
HOH
HOH
563
A
HOH
74
3
HOH
HOH
564
A
HOH
29
3
HOH
HOH
565
A
HOH
61
3
HOH
HOH
566
A
HOH
92
3
HOH
HOH
567
A
HOH
53
3
HOH
HOH
568
A
HOH
80
3
HOH
HOH
569
A
HOH
40
3
HOH
HOH
570
A
HOH
39
3
HOH
HOH
571
A
HOH
65
3
HOH
HOH
572
A
HOH
57
3
HOH
HOH
573
A
HOH
62
3
HOH
HOH
574
A
HOH
49
3
HOH
HOH
575
A
HOH
136
3
HOH
HOH
576
A
HOH
10
3
HOH
HOH
577
A
HOH
30
3
HOH
HOH
578
A
HOH
79
3
HOH
HOH
579
A
HOH
99
3
HOH
HOH
580
A
HOH
31
3
HOH
HOH
581
A
HOH
77
3
HOH
HOH
582
A
HOH
41
3
HOH
HOH
583
A
HOH
13
3
HOH
HOH
584
A
HOH
21
3
HOH
HOH
585
A
HOH
83
3
HOH
HOH
586
A
HOH
86
3
HOH
HOH
587
A
HOH
81
3
HOH
HOH
588
A
HOH
135
3
HOH
HOH
589
A
HOH
24
3
HOH
HOH
590
A
HOH
8
3
HOH
HOH
591
A
HOH
72
3
HOH
HOH
592
A
HOH
67
3
HOH
HOH
593
A
HOH
33
3
HOH
HOH
594
A
HOH
18
3
HOH
HOH
595
A
HOH
66
3
HOH
HOH
596
A
HOH
119
3
HOH
HOH
597
A
HOH
124
3
HOH
HOH
598
A
HOH
43
3
HOH
HOH
599
A
HOH
46
3
HOH
HOH
600
A
HOH
73
3
HOH
HOH
601
A
HOH
139
3
HOH
HOH
602
A
HOH
76
3
HOH
HOH
603
A
HOH
69
3
HOH
HOH
604
A
HOH
14
3
HOH
HOH
605
A
HOH
104
3
HOH
HOH
606
A
HOH
56
3
HOH
HOH
607
A
HOH
70
3
HOH
HOH
608
A
HOH
131
3
HOH
HOH
609
A
HOH
118
3
HOH
HOH
610
A
HOH
27
3
HOH
HOH
611
A
HOH
134
3
HOH
HOH
612
A
HOH
117
3
HOH
HOH
613
A
HOH
91
3
HOH
HOH
614
A
HOH
140
3
HOH
HOH
615
A
HOH
89
3
HOH
HOH
616
A
HOH
87
3
HOH
HOH
617
A
HOH
129
3
HOH
HOH
618
A
HOH
132
3
HOH
HOH
619
A
HOH
133
3
HOH
HOH
620
A
HOH
47
3
HOH
HOH
621
A
HOH
112
3
HOH
HOH
622
A
HOH
138
3
HOH
HOH
623
A
HOH
113
3
HOH
HOH
624
A
HOH
120
3
HOH
HOH
625
A
HOH
137
3
HOH
HOH
626
A
HOH
125
3
HOH
HOH
627
A
HOH
106
3
HOH
HOH
628
A
HOH
127
3
HOH
HOH
629
A
HOH
96
3
HOH
HOH
630
A
HOH
110
3
HOH
HOH
631
A
HOH
94
3
HOH
HOH
632
A
HOH
84
3
HOH
HOH
633
A
HOH
102
3
HOH
HOH
634
A
HOH
88
3
HOH
HOH
635
A
HOH
105
3
HOH
HOH
636
A
HOH
108
3
HOH
HOH
637
A
HOH
123
3
HOH
HOH
638
A
HOH
100
3
HOH
HOH
639
A
HOH
115
3
HOH
HOH
640
A
HOH
93
3
HOH
HOH
641
A
n
1
224
A
n
2
225
A
n
3
226
A
n
4
227
A
n
5
228
A
n
6
229
A
ASP
230
n
7
ASP
230
A
GLY
231
n
8
GLY
231
A
GLN
232
n
9
GLN
232
A
ALA
233
n
10
ALA
233
A
VAL
234
n
11
VAL
234
A
GLY
235
n
12
GLY
235
A
GLU
236
n
13
GLU
236
A
LYS
237
n
14
LYS
237
A
ILE
238
n
15
ILE
238
A
PHE
239
n
16
PHE
239
A
LYS
240
n
17
LYS
240
A
THR
241
n
18
THR
241
A
ALA
242
n
19
ALA
242
A
GLY
243
n
20
GLY
243
A
ALA
244
n
21
ALA
244
A
VAL
245
n
22
VAL
245
A
LYS
246
n
23
LYS
246
A
SER
247
n
24
SER
247
A
TYR
248
n
25
TYR
248
A
SER
249
n
26
SER
249
A
ASP
250
n
27
ASP
250
A
ALA
251
n
28
ALA
251
A
GLU
252
n
29
GLU
252
A
GLN
253
n
30
GLN
253
A
LEU
254
n
31
LEU
254
A
CYS
255
n
32
CYS
255
A
ARG
256
n
33
ARG
256
A
GLU
257
n
34
GLU
257
A
ALA
258
n
35
ALA
258
A
LYS
259
n
36
LYS
259
A
GLY
260
n
37
GLY
260
A
GLN
261
n
38
GLN
261
A
LEU
262
n
39
LEU
262
A
ALA
263
n
40
ALA
263
A
SER
264
n
41
SER
264
A
PRO
265
n
42
PRO
265
A
ARG
266
n
43
ARG
266
A
SER
267
n
44
SER
267
A
SER
268
n
45
SER
268
A
ALA
269
n
46
ALA
269
A
GLU
270
n
47
GLU
270
A
ASN
271
n
48
ASN
271
A
GLU
272
n
49
GLU
272
A
ALA
273
n
50
ALA
273
A
VAL
274
n
51
VAL
274
A
THR
275
n
52
THR
275
A
GLN
276
n
53
GLN
276
A
MET
277
n
54
MET
277
A
VAL
278
n
55
VAL
278
A
ARG
279
n
56
ARG
279
A
ALA
280
n
57
ALA
280
A
GLN
281
n
58
GLN
281
A
GLU
282
n
59
GLU
282
A
LYS
283
n
60
LYS
283
A
ASN
284
n
61
ASN
284
A
ALA
285
n
62
ALA
285
A
TYR
286
n
63
TYR
286
A
LEU
287
n
64
LEU
287
A
SER
288
n
65
SER
288
A
MET
289
n
66
MET
289
A
ASN
290
n
67
ASN
290
A
ASP
291
n
68
ASP
291
A
ILE
292
n
69
ILE
292
A
SER
293
n
70
SER
293
A
THR
294
n
71
THR
294
A
GLU
295
n
72
GLU
295
A
GLY
296
n
73
GLY
296
A
ARG
297
n
74
ARG
297
A
PHE
298
n
75
PHE
298
A
THR
299
n
76
THR
299
A
TYR
300
n
77
TYR
300
A
PRO
301
n
78
PRO
301
A
THR
302
n
79
THR
302
A
GLY
303
n
80
GLY
303
A
GLU
304
n
81
GLU
304
A
ILE
305
n
82
ILE
305
A
LEU
306
n
83
LEU
306
A
VAL
307
n
84
VAL
307
A
TYR
308
n
85
TYR
308
A
SER
309
n
86
SER
309
A
ASN
310
n
87
ASN
310
A
TRP
311
n
88
TRP
311
A
ALA
312
n
89
ALA
312
A
ASP
313
n
90
ASP
313
A
GLY
314
n
91
GLY
314
A
GLU
315
n
92
GLU
315
A
PRO
316
n
93
PRO
316
A
ASN
317
n
94
ASN
317
A
n
95
318
A
n
96
319
A
n
97
320
A
n
98
321
A
n
99
322
A
n
100
323
A
PRO
324
n
101
PRO
324
A
GLU
325
n
102
GLU
325
A
ASN
326
n
103
ASN
326
A
CYS
327
n
104
CYS
327
A
VAL
328
n
105
VAL
328
A
GLU
329
n
106
GLU
329
A
ILE
330
n
107
ILE
330
A
PHE
331
n
108
PHE
331
A
PRO
332
n
109
PRO
332
A
ASP
333
n
110
ASP
333
A
GLY
334
n
111
GLY
334
A
LYS
335
n
112
LYS
335
A
TRP
336
n
113
TRP
336
A
ASN
337
n
114
ASN
337
A
ASP
338
n
115
ASP
338
A
VAL
339
n
116
VAL
339
A
PRO
340
n
117
PRO
340
A
CYS
341
n
118
CYS
341
A
SER
342
n
119
SER
342
A
LYS
343
n
120
LYS
343
A
GLN
344
n
121
GLN
344
A
LEU
345
n
122
LEU
345
A
LEU
346
n
123
LEU
346
A
VAL
347
n
124
VAL
347
A
ILE
348
n
125
ILE
348
A
CYS
349
n
126
CYS
349
A
GLU
350
n
127
GLU
350
A
PHE
351
n
128
PHE
351
A
10.21252/aram-j439
diffraction image data
software_defined_assembly
PISA
1
monomeric
From known literature, active molecule is composed of four trimeric units - trimeric unit is composed of N-terminal domain, collagen-like helix, alpha-helical coiled-coil and 3 carbohydrate recognition domains. As the structure only contains a carbohydrate recognition domain, it is only a monomer.
none
90
-12
6220
A
GLU
315
A
OE1
GLU
92
1_555
A
CA
400
B
CA
CA
1_555
A
ASN
317
A
OD1
ASN
94
1_555
74.7
A
GLU
315
A
OE1
GLU
92
1_555
A
CA
400
B
CA
CA
1_555
A
GLU
325
A
OE1
GLU
102
1_555
146.8
A
ASN
317
A
OD1
ASN
94
1_555
A
CA
400
B
CA
CA
1_555
A
GLU
325
A
OE1
GLU
102
1_555
74.7
A
GLU
315
A
OE1
GLU
92
1_555
A
CA
400
B
CA
CA
1_555
A
ASN
337
A
OD1
ASN
114
1_555
70.2
A
ASN
317
A
OD1
ASN
94
1_555
A
CA
400
B
CA
CA
1_555
A
ASN
337
A
OD1
ASN
114
1_555
140.5
A
GLU
325
A
OE1
GLU
102
1_555
A
CA
400
B
CA
CA
1_555
A
ASN
337
A
OD1
ASN
114
1_555
142.9
A
GLU
315
A
OE1
GLU
92
1_555
A
CA
400
B
CA
CA
1_555
A
ASP
338
A
O
ASP
115
1_555
133.3
A
ASN
317
A
OD1
ASN
94
1_555
A
CA
400
B
CA
CA
1_555
A
ASP
338
A
O
ASP
115
1_555
143.2
A
GLU
325
A
OE1
GLU
102
1_555
A
CA
400
B
CA
CA
1_555
A
ASP
338
A
O
ASP
115
1_555
71.1
A
ASN
337
A
OD1
ASN
114
1_555
A
CA
400
B
CA
CA
1_555
A
ASP
338
A
O
ASP
115
1_555
76.2
A
GLU
315
A
OE1
GLU
92
1_555
A
CA
400
B
CA
CA
1_555
A
ASP
338
A
OD1
ASP
115
1_555
77.1
A
ASN
317
A
OD1
ASN
94
1_555
A
CA
400
B
CA
CA
1_555
A
ASP
338
A
OD1
ASP
115
1_555
84.6
A
GLU
325
A
OE1
GLU
102
1_555
A
CA
400
B
CA
CA
1_555
A
ASP
338
A
OD1
ASP
115
1_555
87.7
A
ASN
337
A
OD1
ASN
114
1_555
A
CA
400
B
CA
CA
1_555
A
ASP
338
A
OD1
ASP
115
1_555
104.2
A
ASP
338
A
O
ASP
115
1_555
A
CA
400
B
CA
CA
1_555
A
ASP
338
A
OD1
ASP
115
1_555
80.9
A
GLU
315
A
OE1
GLU
92
1_555
A
CA
400
B
CA
CA
1_555
A
HOH
530
C
O
HOH
1_555
80.4
A
ASN
317
A
OD1
ASN
94
1_555
A
CA
400
B
CA
CA
1_555
A
HOH
530
C
O
HOH
1_555
74.9
A
GLU
325
A
OE1
GLU
102
1_555
A
CA
400
B
CA
CA
1_555
A
HOH
530
C
O
HOH
1_555
103.5
A
ASN
337
A
OD1
ASN
114
1_555
A
CA
400
B
CA
CA
1_555
A
HOH
530
C
O
HOH
1_555
81.8
A
ASP
338
A
O
ASP
115
1_555
A
CA
400
B
CA
CA
1_555
A
HOH
530
C
O
HOH
1_555
126.0
A
ASP
338
A
OD1
ASP
115
1_555
A
CA
400
B
CA
CA
1_555
A
HOH
530
C
O
HOH
1_555
152.8
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
GLN
232
A
N
GLN
9
A
O
PHE
239
A
O
PHE
16
A
N
LYS
240
A
N
LYS
17
A
O
CYS
349
A
O
CYS
126
A
O
GLU
350
A
O
GLU
127
A
N
GLN
261
A
N
GLN
38
A
N
ALA
285
A
N
ALA
62
A
O
ILE
330
A
O
ILE
107
A
N
GLU
329
A
N
GLU
106
A
O
ASN
337
A
O
ASN
114
1
A
LYS
224
A
LYS
1
1
Y
1
A
ALA
225
A
ALA
2
1
Y
1
A
VAL
226
A
VAL
3
1
Y
1
A
LEU
227
A
LEU
4
1
Y
1
A
PHE
228
A
PHE
5
1
Y
1
A
PRO
229
A
PRO
6
1
Y
1
A
ASN
318
A
ASN
95
1
Y
1
A
SER
319
A
SER
96
1
Y
1
A
ASP
320
A
ASP
97
1
Y
1
A
GLU
321
A
GLU
98
1
Y
1
A
GLY
322
A
GLY
99
1
Y
1
A
GLN
323
A
GLN
100
1
Y
1
A
ASN
310
-146.34
51.08
111.390
14.1480
6.210
-0.2500
0.0000
0.0000
-0.2500
0.0000
0.5000
0.9740
0.9760
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : REFINED INDIVIDUALLY
0.1388
0.1347
0.1349
0.9740
50.0000
3086
58175
5.0000
81.1300
0.4610
0.0110
0.0209
RANDOM
1
FREE R-VALUE
0.000
MOLECULAR REPLACEMENT
0.0210
0.0200
0.8000
0.8000
1.2000
6RYM
0.9740
50.0000
141
1038
16.95
25.55
1
0
896
116
0.010
0.013
921
0.001
0.018
812
1.654
1.648
1248
1.568
1.578
1904
6.370
5.000
116
33.741
24.694
49
11.609
15.000
154
13.245
15.000
4
0.088
0.200
119
0.009
0.020
1053
0.001
0.020
179
7.733
3.000
1733
0.4610
0.0000
0.4980
1.0000
35
667
702
20
12.6200
0.974
50.170
6RYG
61295
0.050
0.059
0.050
1
7.000
22.900
471902
7.700
81.200
0.216
0.970
1.020
3.200
4289
1888
0.315
0.216
1
2.300
2.300
20.500
0.123
1.020
1.080
5.700
20331
5926
0.166
0.123
1
5.200
3.400
55.700
0.095
1.080
1.150
6.600
41006
8123
0.121
0.095
1
10.500
5.000
81.300
0.078
1.150
1.250
7.400
66785
9352
0.097
0.078
1
16.800
7.100
99.600
0.060
1.250
1.370
9.400
63202
8580
0.074
0.060
1
21.600
7.400
100.000
0.057
1.370
1.530
9.600
60385
7810
0.069
0.057
1
25.900
7.700
100.000
0.054
1.530
1.760
10.600
69126
6874
0.062
0.054
1
32.600
10.100
100.000
0.051
1.760
2.160
10.900
74548
5841
0.060
0.051
1
41.800
12.800
100.000
0.047
2.160
3.050
12.400
53973
4527
0.055
0.047
1
42.000
11.900
100.000
0.045
3.050
52.247
12.600
18257
2374
0.059
0.045
1
33.000
7.700
93.900
data reduction
MOSFLM
data scaling
SCALA
3.1.4
refinement
REFMAC
5.8.0238
data extraction
PDB_EXTRACT
3.25
phasing
REFMAC
N
native structure of conglutinin carbohydrate recognition domain
1
N
N
2
N
N
3
N
N
A
SER
247
A
SER
24
HELX_P
A
ALA
258
A
ALA
35
1
AA1
12
A
SER
267
A
SER
44
HELX_P
A
GLU
282
A
GLU
59
1
AA2
16
disulf
2.065
A
CYS
255
A
SG
CYS
32
1_555
A
CYS
349
A
SG
CYS
126
1_555
disulf
2.031
A
CYS
327
A
SG
CYS
104
1_555
A
CYS
341
A
SG
CYS
118
1_555
metalc
2.487
A
GLU
315
A
OE1
GLU
92
1_555
A
CA
400
B
CA
CA
1_555
metalc
2.438
A
ASN
317
A
OD1
ASN
94
1_555
A
CA
400
B
CA
CA
1_555
metalc
2.431
A
GLU
325
A
OE1
GLU
102
1_555
A
CA
400
B
CA
CA
1_555
metalc
2.419
A
ASN
337
A
OD1
ASN
114
1_555
A
CA
400
B
CA
CA
1_555
metalc
2.560
A
ASP
338
A
O
ASP
115
1_555
A
CA
400
B
CA
CA
1_555
metalc
2.273
A
ASP
338
A
OD1
ASP
115
1_555
A
CA
400
B
CA
CA
1_555
metalc
2.456
A
CA
400
B
CA
CA
1_555
A
HOH
530
C
O
HOH
1_555
IMMUNE SYSTEM
carbohydrate recognition domain, lectin, collectin, sugar binding protein, IMMUNE SYSTEM
A
GLU
315
A
GLU
92
1
A
PRO
316
A
PRO
93
-11.77
CONG_BOVIN
UNP
1
244
P23805
KAVLFPDGQAVGEKIFKTAGAVKSYSDAEQLCREAKGQLASPRSSAENEAVTQMVRAQEKNAYLSMNDISTEGRFTYPTG
EILVYSNWADGEPNNSDEGQPENCVEIFPDGKWNDVPCSKQLLVICEF
244
371
6RYG
224
351
P23805
A
1
1
128
4
3
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
GLN
232
A
GLN
9
A
VAL
234
A
VAL
11
A
LYS
237
A
LYS
14
A
LYS
246
A
LYS
23
A
LEU
345
A
LEU
122
A
PHE
351
A
PHE
128
A
GLN
261
A
GLN
38
A
LEU
262
A
LEU
39
A
ALA
285
A
ALA
62
A
TYR
286
A
TYR
63
A
CYS
327
A
CYS
104
A
ILE
330
A
ILE
107
A
TRP
336
A
TRP
113
A
VAL
339
A
VAL
116
binding site for residue CA A 400
A
CA
400
Software
6
A
GLU
315
A
GLU
92
6
1_555
A
ASN
317
A
ASN
94
6
1_555
A
GLU
325
A
GLU
102
6
1_555
A
ASN
337
A
ASN
114
6
1_555
A
ASP
338
A
ASP
115
6
1_555
A
HOH
530
C
HOH
6
1_555
78
P 43