0.014242
0.008222
0.000000
0.000000
0.016445
0.000000
0.000000
0.000000
0.008179
0.000000
0.000000
0.000000
0000-0001-9842-8117
Renko, M.
Schaefer, J.V.
Pluckthun, A.
0000-0002-7170-8706
Bienz, M.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.000
90.000
120.000
70.217
70.217
122.257
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C5 H11 N O2 Se
196.106
n
SELENOMETHIONINE
L-peptide linking
C8 H18 O5
194.226
TETRAETHYLENE GLYCOL
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Proc.Natl.Acad.Sci.USA
PNASA6
0040
1091-6490
116
20977
20983
10.1073/pnas.1912705116
31570581
Rotational symmetry of the structured Chip/LDB-SSDP core module of the Wnt enhanceosome.
2019
0000-0001-9842-8117
0000-0003-4191-5306
100
1
N
PIXEL
2017-10-19
DECTRIS PILATUS3 S 6M
SINGLE WAVELENGTH
M
x-ray
1
0.978860
1.0
I24
Diamond
0.978860
SYNCHROTRON
DIAMOND BEAMLINE I24
22172.979
LIM domain-binding protein 1
1
man
polymer
17773.859
Darpin 3
1
man
polymer
194.226
TETRAETHYLENE GLYCOL
2
syn
non-polymer
18.015
water
27
nat
water
xLdb1
no
yes
SSGGIGRHTPYGNQTDYRIFELNKRLQNWTEECDNLWWDAFTTEFFEDDA(MSE)LTITFCLEDGPKRYTIGRTLIPRYF
RSIFEGGATELYYVLKHPKESFHNNFVSLDCDQCT(MSE)VTQHGKP(MSE)FTQVCVEGRLYLEF(MSE)FDD(MSE)
(MSE)RIKTWHFSIRQHRELIPRSILA(MSE)HAQDPQ(MSE)LDQLSKNITRCGLS
SSGGIGRHTPYGNQTDYRIFELNKRLQNWTEECDNLWWDAFTTEFFEDDAMLTITFCLEDGPKRYTIGRTLIPRYFRSIF
EGGATELYYVLKHPKESFHNNFVSLDCDQCTMVTQHGKPMFTQVCVEGRLYLEFMFDDMMRIKTWHFSIRQHRELIPRSI
LAMHAQDPQMLDQLSKNITRCGLS
A
polypeptide(L)
no
no
MRGSHHHHHHHHHHGGGGSYPYDVPDYALEVLFQGPGSDLGKKLLEAATEGQDDEVRILMANGADVNAHDRLGSTPLHLA
AKMGHLEIVEVLLKTGADVNAEDTAGYTPLHLAAAWGHLEIVEVLLKHGADVNAQDKFGKTPFDLAAIFGNEDIAEVLQK
AAKLN
MRGSHHHHHHHHHHGGGGSYPYDVPDYALEVLFQGPGSDLGKKLLEAATEGQDDEVRILMANGADVNAHDRLGSTPLHLA
AKMGHLEIVEVLLKTGADVNAEDTAGYTPLHLAAAWGHLEIVEVLLKHGADVNAQDKFGKTPFDLAAIFGNEDIAEVLQK
AAKLN
D
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
African clawed frog
sample
1
184
ldb1
8355
Xenopus laevis
562
Escherichia coli
Biological sequence
sample
1
165
32630
synthetic construct
562
Escherichia coli
Biological sequence
1
2.55
51.75
VAPOR DIFFUSION, SITTING DROP
7.0
0.1 M TrisHCL, pH 7.0
32% PEG200
0.05 M Li2SO4
293
citation
repository
Initial release
Data collection
Database references
1
0
2019-10-09
1
1
2019-10-23
_citation.journal_volume
_citation.page_first
_citation.page_last
United Kingdom
Medical Research Council (United Kingdom)
N
PDBE
Y
PDBE
2019-07-15
REL
REL
PG4
TETRAETHYLENE GLYCOL
HOH
water
N
PG4
1
3
PG4
PG4
301
A
PG4
2
3
PG4
PG4
302
A
HOH
15
4
HOH
HOH
401
A
HOH
20
4
HOH
HOH
402
A
HOH
16
4
HOH
HOH
403
A
HOH
17
4
HOH
HOH
404
A
HOH
6
4
HOH
HOH
405
A
HOH
2
4
HOH
HOH
406
A
HOH
10
4
HOH
HOH
407
A
HOH
9
4
HOH
HOH
408
A
HOH
3
4
HOH
HOH
409
A
HOH
27
4
HOH
HOH
410
A
HOH
23
4
HOH
HOH
411
A
HOH
8
4
HOH
HOH
412
A
HOH
19
4
HOH
HOH
413
A
HOH
1
4
HOH
HOH
414
A
HOH
26
4
HOH
HOH
415
A
HOH
14
4
HOH
HOH
401
D
HOH
25
4
HOH
HOH
402
D
HOH
5
4
HOH
HOH
403
D
HOH
28
4
HOH
HOH
404
D
HOH
12
4
HOH
HOH
405
D
HOH
4
4
HOH
HOH
406
D
HOH
21
4
HOH
HOH
407
D
HOH
18
4
HOH
HOH
408
D
HOH
13
4
HOH
HOH
409
D
HOH
7
4
HOH
HOH
410
D
HOH
11
4
HOH
HOH
411
D
HOH
22
4
HOH
HOH
412
D
n
1
17
A
n
2
18
A
n
3
19
A
n
4
20
A
n
5
21
A
n
6
22
A
n
7
23
A
n
8
24
A
n
9
25
A
n
10
26
A
n
11
27
A
n
12
28
A
n
13
29
A
GLN
30
n
14
GLN
30
A
THR
31
n
15
THR
31
A
ASP
32
n
16
ASP
32
A
TYR
33
n
17
TYR
33
A
ARG
34
n
18
ARG
34
A
ILE
35
n
19
ILE
35
A
PHE
36
n
20
PHE
36
A
GLU
37
n
21
GLU
37
A
LEU
38
n
22
LEU
38
A
ASN
39
n
23
ASN
39
A
LYS
40
n
24
LYS
40
A
ARG
41
n
25
ARG
41
A
LEU
42
n
26
LEU
42
A
GLN
43
n
27
GLN
43
A
ASN
44
n
28
ASN
44
A
TRP
45
n
29
TRP
45
A
THR
46
n
30
THR
46
A
GLU
47
n
31
GLU
47
A
GLU
48
n
32
GLU
48
A
CYS
49
n
33
CYS
49
A
ASP
50
n
34
ASP
50
A
ASN
51
n
35
ASN
51
A
LEU
52
n
36
LEU
52
A
TRP
53
n
37
TRP
53
A
TRP
54
n
38
TRP
54
A
ASP
55
n
39
ASP
55
A
ALA
56
n
40
ALA
56
A
PHE
57
n
41
PHE
57
A
THR
58
n
42
THR
58
A
THR
59
n
43
THR
59
A
GLU
60
n
44
GLU
60
A
PHE
61
n
45
PHE
61
A
PHE
62
n
46
PHE
62
A
GLU
63
n
47
GLU
63
A
ASP
64
n
48
ASP
64
A
ASP
65
n
49
ASP
65
A
ALA
66
n
50
ALA
66
A
MSE
67
n
51
MSE
67
A
LEU
68
n
52
LEU
68
A
THR
69
n
53
THR
69
A
ILE
70
n
54
ILE
70
A
THR
71
n
55
THR
71
A
PHE
72
n
56
PHE
72
A
CYS
73
n
57
CYS
73
A
LEU
74
n
58
LEU
74
A
GLU
75
n
59
GLU
75
A
ASP
76
n
60
ASP
76
A
GLY
77
n
61
GLY
77
A
PRO
78
n
62
PRO
78
A
LYS
79
n
63
LYS
79
A
ARG
80
n
64
ARG
80
A
TYR
81
n
65
TYR
81
A
THR
82
n
66
THR
82
A
ILE
83
n
67
ILE
83
A
GLY
84
n
68
GLY
84
A
ARG
85
n
69
ARG
85
A
THR
86
n
70
THR
86
A
LEU
87
n
71
LEU
87
A
ILE
88
n
72
ILE
88
A
PRO
89
n
73
PRO
89
A
ARG
90
n
74
ARG
90
A
TYR
91
n
75
TYR
91
A
PHE
92
n
76
PHE
92
A
ARG
93
n
77
ARG
93
A
SER
94
n
78
SER
94
A
ILE
95
n
79
ILE
95
A
PHE
96
n
80
PHE
96
A
GLU
97
n
81
GLU
97
A
GLY
98
n
82
GLY
98
A
GLY
99
n
83
GLY
99
A
ALA
100
n
84
ALA
100
A
THR
101
n
85
THR
101
A
GLU
102
n
86
GLU
102
A
LEU
103
n
87
LEU
103
A
TYR
104
n
88
TYR
104
A
TYR
105
n
89
TYR
105
A
VAL
106
n
90
VAL
106
A
LEU
107
n
91
LEU
107
A
LYS
108
n
92
LYS
108
A
HIS
109
n
93
HIS
109
A
PRO
110
n
94
PRO
110
A
LYS
111
n
95
LYS
111
A
GLU
112
n
96
GLU
112
A
SER
113
n
97
SER
113
A
PHE
114
n
98
PHE
114
A
HIS
115
n
99
HIS
115
A
ASN
116
n
100
ASN
116
A
ASN
117
n
101
ASN
117
A
PHE
118
n
102
PHE
118
A
VAL
119
n
103
VAL
119
A
SER
120
n
104
SER
120
A
LEU
121
n
105
LEU
121
A
ASP
122
n
106
ASP
122
A
CYS
123
n
107
CYS
123
A
ASP
124
n
108
ASP
124
A
GLN
125
n
109
GLN
125
A
CYS
126
n
110
CYS
126
A
THR
127
n
111
THR
127
A
MSE
128
n
112
MSE
128
A
VAL
129
n
113
VAL
129
A
THR
130
n
114
THR
130
A
GLN
131
n
115
GLN
131
A
HIS
132
n
116
HIS
132
A
GLY
133
n
117
GLY
133
A
LYS
134
n
118
LYS
134
A
PRO
135
n
119
PRO
135
A
MSE
136
n
120
MSE
136
A
PHE
137
n
121
PHE
137
A
THR
138
n
122
THR
138
A
GLN
139
n
123
GLN
139
A
VAL
140
n
124
VAL
140
A
CYS
141
n
125
CYS
141
A
VAL
142
n
126
VAL
142
A
GLU
143
n
127
GLU
143
A
GLY
144
n
128
GLY
144
A
ARG
145
n
129
ARG
145
A
LEU
146
n
130
LEU
146
A
TYR
147
n
131
TYR
147
A
LEU
148
n
132
LEU
148
A
GLU
149
n
133
GLU
149
A
PHE
150
n
134
PHE
150
A
MSE
151
n
135
MSE
151
A
PHE
152
n
136
PHE
152
A
ASP
153
n
137
ASP
153
A
ASP
154
n
138
ASP
154
A
MSE
155
n
139
MSE
155
A
MSE
156
n
140
MSE
156
A
ARG
157
n
141
ARG
157
A
ILE
158
n
142
ILE
158
A
LYS
159
n
143
LYS
159
A
THR
160
n
144
THR
160
A
TRP
161
n
145
TRP
161
A
HIS
162
n
146
HIS
162
A
PHE
163
n
147
PHE
163
A
SER
164
n
148
SER
164
A
ILE
165
n
149
ILE
165
A
ARG
166
n
150
ARG
166
A
GLN
167
n
151
GLN
167
A
HIS
168
n
152
HIS
168
A
ARG
169
n
153
ARG
169
A
GLU
170
n
154
GLU
170
A
LEU
171
n
155
LEU
171
A
ILE
172
n
156
ILE
172
A
PRO
173
n
157
PRO
173
A
ARG
174
n
158
ARG
174
A
SER
175
n
159
SER
175
A
ILE
176
n
160
ILE
176
A
LEU
177
n
161
LEU
177
A
ALA
178
n
162
ALA
178
A
MSE
179
n
163
MSE
179
A
HIS
180
n
164
HIS
180
A
ALA
181
n
165
ALA
181
A
GLN
182
n
166
GLN
182
A
ASP
183
n
167
ASP
183
A
PRO
184
n
168
PRO
184
A
GLN
185
n
169
GLN
185
A
MSE
186
n
170
MSE
186
A
LEU
187
n
171
LEU
187
A
ASP
188
n
172
ASP
188
A
GLN
189
n
173
GLN
189
A
LEU
190
n
174
LEU
190
A
SER
191
n
175
SER
191
A
LYS
192
n
176
LYS
192
A
ASN
193
n
177
ASN
193
A
ILE
194
n
178
ILE
194
A
THR
195
n
179
THR
195
A
ARG
196
n
180
ARG
196
A
n
181
197
A
n
182
198
A
n
183
199
A
n
184
200
A
n
1
182
D
n
2
183
D
n
3
184
D
n
4
185
D
n
5
186
D
n
6
187
D
n
7
188
D
n
8
189
D
n
9
190
D
n
10
191
D
n
11
192
D
n
12
193
D
n
13
194
D
n
14
195
D
n
15
196
D
n
16
197
D
n
17
198
D
n
18
199
D
n
19
200
D
n
20
201
D
n
21
202
D
n
22
203
D
n
23
204
D
n
24
205
D
n
25
206
D
n
26
207
D
n
27
208
D
n
28
209
D
n
29
210
D
n
30
211
D
n
31
212
D
n
32
213
D
n
33
214
D
n
34
215
D
n
35
216
D
n
36
217
D
n
37
218
D
ALA
219
n
38
SER
219
D
ASP
220
n
39
ASP
220
D
LEU
221
n
40
LEU
221
D
GLY
222
n
41
GLY
222
D
LYS
223
n
42
LYS
223
D
LYS
224
n
43
LYS
224
D
LEU
225
n
44
LEU
225
D
LEU
226
n
45
LEU
226
D
GLU
227
n
46
GLU
227
D
ALA
228
n
47
ALA
228
D
ALA
229
n
48
ALA
229
D
THR
230
n
49
THR
230
D
GLU
231
n
50
GLU
231
D
GLY
232
n
51
GLY
232
D
GLN
233
n
52
GLN
233
D
ASP
234
n
53
ASP
234
D
ASP
235
n
54
ASP
235
D
GLU
236
n
55
GLU
236
D
VAL
237
n
56
VAL
237
D
ARG
238
n
57
ARG
238
D
ILE
239
n
58
ILE
239
D
LEU
240
n
59
LEU
240
D
MET
241
n
60
MET
241
D
ALA
242
n
61
ALA
242
D
ASN
243
n
62
ASN
243
D
GLY
244
n
63
GLY
244
D
ALA
245
n
64
ALA
245
D
ASP
246
n
65
ASP
246
D
VAL
247
n
66
VAL
247
D
ASN
248
n
67
ASN
248
D
ALA
249
n
68
ALA
249
D
HIS
250
n
69
HIS
250
D
ASP
251
n
70
ASP
251
D
ARG
252
n
71
ARG
252
D
LEU
253
n
72
LEU
253
D
GLY
254
n
73
GLY
254
D
SER
255
n
74
SER
255
D
THR
256
n
75
THR
256
D
PRO
257
n
76
PRO
257
D
LEU
258
n
77
LEU
258
D
HIS
259
n
78
HIS
259
D
LEU
260
n
79
LEU
260
D
ALA
261
n
80
ALA
261
D
ALA
262
n
81
ALA
262
D
LYS
263
n
82
LYS
263
D
MET
264
n
83
MET
264
D
GLY
265
n
84
GLY
265
D
HIS
266
n
85
HIS
266
D
LEU
267
n
86
LEU
267
D
GLU
268
n
87
GLU
268
D
ILE
269
n
88
ILE
269
D
VAL
270
n
89
VAL
270
D
GLU
271
n
90
GLU
271
D
VAL
272
n
91
VAL
272
D
LEU
273
n
92
LEU
273
D
LEU
274
n
93
LEU
274
D
LYS
275
n
94
LYS
275
D
THR
276
n
95
THR
276
D
GLY
277
n
96
GLY
277
D
ALA
278
n
97
ALA
278
D
ASP
279
n
98
ASP
279
D
VAL
280
n
99
VAL
280
D
ASN
281
n
100
ASN
281
D
ALA
282
n
101
ALA
282
D
GLU
283
n
102
GLU
283
D
ASP
284
n
103
ASP
284
D
THR
285
n
104
THR
285
D
ALA
286
n
105
ALA
286
D
GLY
287
n
106
GLY
287
D
TYR
288
n
107
TYR
288
D
THR
289
n
108
THR
289
D
PRO
290
n
109
PRO
290
D
LEU
291
n
110
LEU
291
D
HIS
292
n
111
HIS
292
D
LEU
293
n
112
LEU
293
D
ALA
294
n
113
ALA
294
D
ALA
295
n
114
ALA
295
D
ALA
296
n
115
ALA
296
D
TRP
297
n
116
TRP
297
D
GLY
298
n
117
GLY
298
D
HIS
299
n
118
HIS
299
D
LEU
300
n
119
LEU
300
D
GLU
301
n
120
GLU
301
D
ILE
302
n
121
ILE
302
D
VAL
303
n
122
VAL
303
D
GLU
304
n
123
GLU
304
D
VAL
305
n
124
VAL
305
D
LEU
306
n
125
LEU
306
D
LEU
307
n
126
LEU
307
D
LYS
308
n
127
LYS
308
D
HIS
309
n
128
HIS
309
D
GLY
310
n
129
GLY
310
D
ALA
311
n
130
ALA
311
D
ASP
312
n
131
ASP
312
D
VAL
313
n
132
VAL
313
D
ASN
314
n
133
ASN
314
D
ALA
315
n
134
ALA
315
D
GLN
316
n
135
GLN
316
D
ASP
317
n
136
ASP
317
D
LYS
318
n
137
LYS
318
D
PHE
319
n
138
PHE
319
D
GLY
320
n
139
GLY
320
D
LYS
321
n
140
LYS
321
D
THR
322
n
141
THR
322
D
PRO
323
n
142
PRO
323
D
PHE
324
n
143
PHE
324
D
ASP
325
n
144
ASP
325
D
LEU
326
n
145
LEU
326
D
ALA
327
n
146
ALA
327
D
ALA
328
n
147
ALA
328
D
ILE
329
n
148
ILE
329
D
PHE
330
n
149
PHE
330
D
GLY
331
n
150
GLY
331
D
ASN
332
n
151
ASN
332
D
GLU
333
n
152
GLU
333
D
ASP
334
n
153
ASP
334
D
ILE
335
n
154
ILE
335
D
ALA
336
n
155
ALA
336
D
GLU
337
n
156
GLU
337
D
VAL
338
n
157
VAL
338
D
LEU
339
n
158
LEU
339
D
GLN
340
n
159
GLN
340
D
LYS
341
n
160
LYS
341
D
ALA
342
n
161
ALA
342
D
ALA
343
n
162
ALA
343
D
LYS
344
n
163
LYS
344
D
LEU
345
n
164
LEU
345
D
ASN
346
n
165
ASN
346
D
2.7498
0.1110
1.9273
1.1334
-0.3835
2.0628
-0.0647
0.2105
0.2420
-0.0648
0.1300
-0.1001
-0.0794
0.1802
-0.0653
0.2109
0.0822
0.0267
0.5770
0.0123
0.4495
refined
35.3309
35.2387
2.6787
X-RAY DIFFRACTION
2.7249
-1.9875
-0.1692
1.5030
0.1880
0.0923
-0.1066
-0.3645
-0.6045
0.0782
0.2631
0.2884
0.0428
0.0620
-0.1564
0.1987
0.1235
0.0095
0.6295
0.1022
0.5741
refined
33.5923
25.0548
15.4052
X-RAY DIFFRACTION
1.2385
0.1722
0.1055
2.6210
1.7204
1.1387
0.0037
-0.0452
0.0323
-0.0472
0.0359
0.0310
-0.0037
0.0390
-0.0396
0.2984
0.1110
0.0167
0.4914
0.0014
0.4858
refined
25.6040
31.9387
6.2917
X-RAY DIFFRACTION
3.8256
1.7376
-0.5921
4.2699
0.0990
0.1363
0.1260
-0.2031
0.2189
0.0391
-0.0385
-0.1035
-0.0042
0.0068
-0.0875
0.2719
0.0929
0.0027
0.5821
-0.0035
0.4138
refined
29.6519
36.9095
13.2298
X-RAY DIFFRACTION
3.4942
-0.0228
2.2304
3.0848
1.5991
2.2842
-0.0581
0.1420
-0.3250
0.0552
0.1167
0.1113
-0.0430
0.1451
-0.0586
0.2810
0.1588
0.0569
0.4192
-0.0010
0.5662
refined
12.6640
12.3075
0.5576
X-RAY DIFFRACTION
3.5721
1.5324
1.3820
0.9474
1.3900
3.5869
0.1786
0.2566
0.0452
-0.0992
-0.1539
-0.0802
-0.3594
-0.2157
-0.0248
0.2767
0.1469
0.0238
0.5594
0.0312
0.4558
refined
61.8227
28.4403
-1.5928
X-RAY DIFFRACTION
4.1219
-0.7786
-1.1594
0.8651
0.2017
0.3271
0.2223
0.0986
-0.1664
0.0663
-0.2598
0.0759
-0.0685
-0.0094
0.0375
0.2310
0.0705
-0.0292
0.5951
-0.0359
0.4681
refined
56.8890
24.9348
5.2533
X-RAY DIFFRACTION
7.5949
-3.7996
-1.8451
1.9620
0.8526
2.1979
0.0673
0.0389
-0.2364
0.0764
-0.0514
0.0525
-0.1808
0.0660
-0.0159
0.2558
0.0610
-0.0184
0.5878
-0.0019
0.4271
refined
57.1149
23.0591
12.9701
X-RAY DIFFRACTION
3.0083
0.9542
1.0612
0.9884
0.3686
0.4672
0.0504
-0.2978
-0.7363
-0.1029
0.1818
0.3202
-0.0881
-0.0626
-0.2322
0.1403
0.0277
-0.0987
0.4786
0.1337
0.7513
refined
47.5885
17.6752
14.0049
X-RAY DIFFRACTION
0.0878
0.3284
0.1178
3.2633
0.9268
0.2899
0.2067
-0.0161
0.1155
0.9291
-0.4437
0.9515
0.4076
-0.1037
0.2370
1.0761
-0.0436
-0.0116
0.1247
-0.0466
0.6170
refined
45.8537
7.8446
17.8180
X-RAY DIFFRACTION
A
30
A
71
X-RAY DIFFRACTION
1
A
72
A
91
X-RAY DIFFRACTION
2
A
92
A
142
X-RAY DIFFRACTION
3
A
143
A
169
X-RAY DIFFRACTION
4
A
170
A
196
X-RAY DIFFRACTION
5
D
219
D
242
X-RAY DIFFRACTION
6
D
243
D
273
X-RAY DIFFRACTION
7
D
274
D
288
X-RAY DIFFRACTION
8
D
289
D
332
X-RAY DIFFRACTION
9
D
333
D
346
X-RAY DIFFRACTION
10
author_and_software_defined_assembly
PISA
4
tetrameric
gel filtration
7770
-21
27780
A
MSE
67
modified residue
A
MSE
51
MET
A
MSE
128
modified residue
A
MSE
112
MET
A
MSE
136
modified residue
A
MSE
120
MET
A
MSE
151
modified residue
A
MSE
135
MET
A
MSE
155
modified residue
A
MSE
139
MET
A
MSE
156
modified residue
A
MSE
140
MET
A
MSE
179
modified residue
A
MSE
163
MET
A
MSE
186
modified residue
A
MSE
170
MET
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-0.5000000000
0.8660254038
0.0000000000
0.8660254038
0.5000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
4_555
y,x,-z
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
A
O
ILE
83
A
O
ILE
67
A
N
LEU
68
A
N
LEU
52
A
N
THR
69
A
N
THR
53
A
O
TRP
161
A
O
TRP
145
A
O
LEU
171
A
O
LEU
155
A
N
GLN
139
A
N
GLN
123
A
O
LEU
146
A
O
LEU
130
A
N
CYS
123
A
N
CYS
107
A
O
THR
127
A
O
THR
111
A
N
VAL
106
A
N
VAL
90
A
O
ILE
83
A
O
ILE
67
A
N
LEU
68
A
N
LEU
52
A
N
THR
69
A
N
THR
53
A
O
TRP
161
A
O
TRP
145
A
O
LEU
171
A
O
LEU
155
A
N
GLN
139
A
N
GLN
123
A
O
LEU
146
A
O
LEU
130
A
N
CYS
123
A
N
CYS
107
A
O
SER
120
A
O
SER
104
A
N
SER
113
A
N
SER
97
1
D
OG
SER
219
B
OG
SER
38
1
Y
1
A
SER
17
A
SER
1
1
Y
1
A
SER
18
A
SER
2
1
Y
1
A
GLY
19
A
GLY
3
1
Y
1
A
GLY
20
A
GLY
4
1
Y
1
A
ILE
21
A
ILE
5
1
Y
1
A
GLY
22
A
GLY
6
1
Y
1
A
ARG
23
A
ARG
7
1
Y
1
A
HIS
24
A
HIS
8
1
Y
1
A
THR
25
A
THR
9
1
Y
1
A
PRO
26
A
PRO
10
1
Y
1
A
TYR
27
A
TYR
11
1
Y
1
A
GLY
28
A
GLY
12
1
Y
1
A
ASN
29
A
ASN
13
1
Y
1
A
CYS
197
A
CYS
181
1
Y
1
A
GLY
198
A
GLY
182
1
Y
1
A
LEU
199
A
LEU
183
1
Y
1
A
SER
200
A
SER
184
1
Y
1
D
MET
182
B
MET
1
1
Y
1
D
ARG
183
B
ARG
2
1
Y
1
D
GLY
184
B
GLY
3
1
Y
1
D
SER
185
B
SER
4
1
Y
1
D
HIS
186
B
HIS
5
1
Y
1
D
HIS
187
B
HIS
6
1
Y
1
D
HIS
188
B
HIS
7
1
Y
1
D
HIS
189
B
HIS
8
1
Y
1
D
HIS
190
B
HIS
9
1
Y
1
D
HIS
191
B
HIS
10
1
Y
1
D
HIS
192
B
HIS
11
1
Y
1
D
HIS
193
B
HIS
12
1
Y
1
D
HIS
194
B
HIS
13
1
Y
1
D
HIS
195
B
HIS
14
1
Y
1
D
GLY
196
B
GLY
15
1
Y
1
D
GLY
197
B
GLY
16
1
Y
1
D
GLY
198
B
GLY
17
1
Y
1
D
GLY
199
B
GLY
18
1
Y
1
D
SER
200
B
SER
19
1
Y
1
D
TYR
201
B
TYR
20
1
Y
1
D
PRO
202
B
PRO
21
1
Y
1
D
TYR
203
B
TYR
22
1
Y
1
D
ASP
204
B
ASP
23
1
Y
1
D
VAL
205
B
VAL
24
1
Y
1
D
PRO
206
B
PRO
25
1
Y
1
D
ASP
207
B
ASP
26
1
Y
1
D
TYR
208
B
TYR
27
1
Y
1
D
ALA
209
B
ALA
28
1
Y
1
D
LEU
210
B
LEU
29
1
Y
1
D
GLU
211
B
GLU
30
1
Y
1
D
VAL
212
B
VAL
31
1
Y
1
D
LEU
213
B
LEU
32
1
Y
1
D
PHE
214
B
PHE
33
1
Y
1
D
GLN
215
B
GLN
34
1
Y
1
D
GLY
216
B
GLY
35
1
Y
1
D
PRO
217
B
PRO
36
1
Y
1
D
GLY
218
B
GLY
37
1
Y
1
A
A
OD1
NH1
ASN
ARG
51
93
1.90
1
A
CYS
49
-54.48
102.19
1
A
ASP
76
-92.43
49.31
1
A
HIS
109
38.33
70.46
1
A
PHE
152
-56.92
104.14
1
A
ASP
154
-108.60
52.19
132.280
57.1230
40.850
-0.8400
-0.4200
0.0000
-0.8400
0.0000
2.7300
0.9580
0.9320
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : WITH TLS ADDED
0.2793
0.2179
0.2206
2.0500
43.1500
1071
21557
4.7000
99.9100
15.7290
0.1880
RANDOM
1
THROUGHOUT
0.000
SAD
0.2050
0.1950
0.8000
0.8000
1.2000
2.0500
43.1500
27
2422
78.08
52.86
26
0
2369
295
0.010
0.013
2454
0.002
0.017
2259
1.722
1.646
3310
1.304
1.577
5241
6.531
5.000
295
32.184
22.993
137
16.869
15.000
397
24.469
15.000
14
0.074
0.200
314
0.009
0.020
2724
0.001
0.020
518
0.3760
0.0000
0.3410
2.1000
97
1550
99.8200
2.05
43.15
6S9T
22528
1.00
0.127
0.021
0.129
1
23.5
39.5
99.92
2.05
2.12
2198
1
refinement
REFMAC
5.8.0253
data extraction
PDB_EXTRACT
3.25
data scaling
XSCALE
phasing
SHELXCD
data reduction
XDS
N
LIM domain-binding protein 1, Darpin 3
Dimerization domain of Xenopus laevis LDB1 in complex with darpin 3
1
N
N
2
N
N
3
N
N
3
N
N
4
N
N
4
N
N
A
THR
31
A
THR
15
HELX_P
A
GLN
43
A
GLN
27
1
AA1
13
A
ASP
50
A
ASP
34
HELX_P
A
PHE
61
A
PHE
45
1
AA2
12
A
LEU
87
A
LEU
71
HELX_P
A
GLY
98
A
GLY
82
1
AA3
12
A
PRO
173
A
PRO
157
HELX_P
A
HIS
180
A
HIS
164
1
AA4
8
A
ASP
183
A
ASP
167
HELX_P
A
LYS
192
A
LYS
176
1
AA5
10
D
ASP
220
B
ASP
39
HELX_P
D
GLY
232
B
GLY
51
1
AA6
13
D
GLN
233
B
GLN
52
HELX_P
D
ASN
243
B
ASN
62
1
AA7
11
D
THR
256
B
THR
75
HELX_P
D
MET
264
B
MET
83
1
AA8
9
D
HIS
266
B
HIS
85
HELX_P
D
THR
276
B
THR
95
1
AA9
11
D
THR
289
B
THR
108
HELX_P
D
TRP
297
B
TRP
116
1
AB1
9
D
HIS
299
B
HIS
118
HELX_P
D
HIS
309
B
HIS
128
1
AB2
11
D
THR
322
B
THR
141
HELX_P
D
PHE
330
B
PHE
149
1
AB3
9
D
ASN
332
B
ASN
151
HELX_P
D
LEU
345
B
LEU
164
1
AB4
14
covale
1.336
both
A
A
ALA
66
A
C
ALA
50
1_555
A
MSE
67
A
N
MSE
51
1_555
covale
1.339
both
B
A
ALA
66
A
C
ALA
50
1_555
A
MSE
67
A
N
MSE
51
1_555
covale
1.334
both
A
A
MSE
67
A
C
MSE
51
1_555
A
LEU
68
A
N
LEU
52
1_555
covale
1.334
both
B
A
MSE
67
A
C
MSE
51
1_555
A
LEU
68
A
N
LEU
52
1_555
covale
1.331
both
A
THR
127
A
C
THR
111
1_555
A
MSE
128
A
N
MSE
112
1_555
covale
1.338
both
A
MSE
128
A
C
MSE
112
1_555
A
VAL
129
A
N
VAL
113
1_555
covale
1.343
both
A
PRO
135
A
C
PRO
119
1_555
A
MSE
136
A
N
MSE
120
1_555
covale
1.343
both
A
MSE
136
A
C
MSE
120
1_555
A
PHE
137
A
N
PHE
121
1_555
covale
1.336
both
A
PHE
150
A
C
PHE
134
1_555
A
MSE
151
A
N
MSE
135
1_555
covale
1.340
both
A
MSE
151
A
C
MSE
135
1_555
A
PHE
152
A
N
PHE
136
1_555
covale
1.347
both
A
ASP
154
A
C
ASP
138
1_555
A
MSE
155
A
N
MSE
139
1_555
covale
1.335
both
A
MSE
155
A
C
MSE
139
1_555
A
MSE
156
A
N
MSE
140
1_555
covale
1.341
both
A
MSE
156
A
C
MSE
140
1_555
A
ARG
157
A
N
ARG
141
1_555
covale
1.338
both
A
ALA
178
A
C
ALA
162
1_555
A
MSE
179
A
N
MSE
163
1_555
covale
1.337
both
A
MSE
179
A
C
MSE
163
1_555
A
HIS
180
A
N
HIS
164
1_555
covale
1.328
both
A
GLN
185
A
C
GLN
169
1_555
A
MSE
186
A
N
MSE
170
1_555
covale
1.339
both
A
MSE
186
A
C
MSE
170
1_555
A
LEU
187
A
N
LEU
171
1_555
GENE REGULATION
WNT signalling, wnt enhanceosome, GENE REGULATION
A
LYS
134
A
LYS
118
1
A
PRO
135
A
PRO
119
1.95
LDB1_XENLA
UNP
1
20
P70060
GIGRHTPYGNQTDYRIFELNKRLQNWTEECDNLWWDAFTTEFFEDDAMLTITFCLEDGPKRYTIGRTLIPRYFRSIFEGG
ATELYYVLKHPKESFHNNFVSLDCDQCTMVTQHGKPMFTQVCVEGRLYLEFMFDDMMRIKTWHFSIRQHRELIPRSILAM
HAQDPQMLDQLSKNITRCGLS
6S9T
PDB
2
1
6S9T
20
200
6S9T
20
200
P70060
A
1
4
184
182
346
6S9T
182
346
6S9T
D
2
1
165
1
expression tag
SER
17
6S9T
A
P70060
UNP
1
1
expression tag
SER
18
6S9T
A
P70060
UNP
2
1
expression tag
GLY
19
6S9T
A
P70060
UNP
3
6
6
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
A
ARG
80
A
ARG
64
A
GLY
84
A
GLY
68
A
PHE
62
A
PHE
46
A
THR
71
A
THR
55
A
ILE
158
A
ILE
142
A
LEU
171
A
LEU
155
A
GLN
139
A
GLN
123
A
MSE
151
A
MSE
135
A
PHE
118
A
PHE
102
A
HIS
132
A
HIS
116
A
ALA
100
A
ALA
84
A
LEU
107
A
LEU
91
A
ARG
80
A
ARG
64
A
GLY
84
A
GLY
68
A
PHE
62
A
PHE
46
A
THR
71
A
THR
55
A
ILE
158
A
ILE
142
A
LEU
171
A
LEU
155
A
GLN
139
A
GLN
123
A
MSE
151
A
MSE
135
A
PHE
118
A
PHE
102
A
HIS
132
A
HIS
116
A
LYS
111
A
LYS
95
A
PHE
114
A
PHE
98
binding site for residue PG4 A 301
A
PG4
301
Software
4
binding site for residue PG4 A 302
A
PG4
302
Software
7
A
PHE
36
A
PHE
20
4
4_555
A
ASN
39
A
ASN
23
4
1_555
A
TYR
104
A
TYR
88
4
1_555
A
HOH
405
E
HOH
4
1_555
A
THR
69
A
THR
53
7
1_555
A
ARG
145
A
ARG
129
7
1_555
A
TYR
147
A
TYR
131
7
1_555
A
THR
160
A
THR
144
7
1_555
A
HIS
162
A
HIS
146
7
1_555
A
SER
164
A
SER
148
7
1_555
D
ASP
279
B
ASP
98
7
5_565
154
P 32 2 1