0.008817
0.005091
0.000000
-0.000000
0.010181
0.000000
0.000000
-0.000000
0.006395
0.000000
0.000000
0.000000
Slyvka, A.
Zagorskaite, E.
Czapinska, H.
Sasnauskas, G.
Bochtler, M.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
24
90.000
90.000
120.000
113.417
113.417
156.367
C10 H16 N3 O8 P
337.223
n
2'-deoxy-5-(hydroxymethyl)cytidine 5'-(dihydrogen phosphate)
DNA linking
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
P
N
2
N
O
N
3
N
O
N
4
N
O
N
5
N
C
N
6
R
C
N
7
N
O
N
8
S
C
N
9
N
O
N
10
N
C
N
11
R
C
N
12
N
N
N
13
N
C
N
14
N
O
N
15
N
N
N
16
N
C
N
17
N
N
N
18
N
C
N
19
N
C
N
20
N
O
N
21
N
C
N
22
N
O
N
23
N
H
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
N
N
40
S
C
N
41
N
C
N
42
N
O
N
43
N
C
N
44
N
O
N
45
N
H
N
46
N
H
N
47
N
H
N
48
N
H
N
49
N
H
N
50
N
H
N
51
N
H
N
52
N
N
N
53
S
C
N
54
N
C
N
55
N
O
N
56
N
C
N
57
N
C
N
58
N
C
N
59
N
N
N
60
N
C
N
61
N
N
N
62
N
N
N
63
N
O
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
H
N
79
N
N
N
80
S
C
N
81
N
C
N
82
N
O
N
83
N
C
N
84
N
C
N
85
N
O
N
86
N
N
N
87
N
O
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
N
N
97
S
C
N
98
N
C
N
99
N
O
N
100
N
C
N
101
N
C
N
102
N
O
N
103
N
O
N
104
N
O
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
N
N
113
R
C
N
114
N
C
N
115
N
O
N
116
N
C
N
117
N
S
N
118
N
O
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
O
N
127
N
P
N
128
N
O
N
129
N
O
N
130
N
O
N
131
N
C
N
132
R
C
N
133
N
O
N
134
S
C
N
135
N
O
N
136
N
C
N
137
R
C
Y
138
N
N
Y
139
N
C
Y
140
N
N
Y
141
N
C
Y
142
N
C
N
143
N
N
Y
144
N
N
Y
145
N
C
Y
146
N
N
Y
147
N
C
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
O
N
163
N
P
N
164
N
O
N
165
N
O
N
166
N
O
N
167
N
C
N
168
R
C
N
169
N
O
N
170
S
C
N
171
N
O
N
172
N
C
N
173
R
C
N
174
N
N
N
175
N
C
N
176
N
O
N
177
N
N
N
178
N
C
N
179
N
N
N
180
N
C
N
181
N
C
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
O
N
197
N
P
N
198
N
O
N
199
N
O
N
200
N
O
N
201
N
C
N
202
R
C
N
203
N
O
N
204
S
C
N
205
N
O
N
206
N
C
N
207
R
C
Y
208
N
N
Y
209
N
C
Y
210
N
N
Y
211
N
C
N
212
N
C
N
213
N
O
N
214
N
N
N
215
N
C
N
216
N
N
N
217
N
N
Y
218
N
C
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
O
N
234
N
P
N
235
N
O
N
236
N
O
N
237
N
O
N
238
N
C
N
239
R
C
N
240
N
O
N
241
S
C
N
242
N
O
N
243
N
C
N
244
R
C
N
245
N
N
N
246
N
C
N
247
N
O
N
248
N
N
N
249
N
C
N
250
N
O
N
251
N
C
N
252
N
C
N
253
N
C
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
N
N
270
S
C
N
271
N
C
N
272
N
O
N
273
N
C
N
274
N
C
N
275
N
C
N
276
N
O
N
277
N
N
N
278
N
O
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
N
N
290
S
C
N
291
N
C
N
292
N
O
N
293
N
C
N
294
N
C
N
295
N
C
N
296
N
O
N
297
N
O
N
298
N
O
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
N
N
309
N
C
N
310
N
C
N
311
N
O
N
312
N
O
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
N
N
319
S
C
N
320
N
C
N
321
N
O
N
322
N
C
Y
323
N
C
Y
324
N
N
Y
325
N
C
Y
326
N
C
Y
327
N
N
N
328
N
O
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
O
N
340
N
H
N
341
N
H
N
342
N
N
N
343
S
C
N
344
N
C
N
345
N
O
N
346
S
C
N
347
N
C
N
348
N
C
N
349
N
C
N
350
N
O
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
N
N
365
S
C
N
366
N
C
N
367
N
O
N
368
N
C
N
369
N
C
N
370
N
C
N
371
N
C
N
372
N
O
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
N
N
387
S
C
N
388
N
C
N
389
N
O
N
390
N
C
N
391
N
C
N
392
N
C
N
393
N
C
N
394
N
N
N
395
N
O
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
N
N
412
S
C
N
413
N
C
N
414
N
O
N
415
N
C
N
416
N
C
N
417
N
S
N
418
N
C
N
419
N
O
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
N
N
432
S
C
N
433
N
C
N
434
N
O
N
435
N
C
Y
436
N
C
Y
437
N
C
Y
438
N
C
Y
439
N
C
Y
440
N
C
Y
441
N
C
N
442
N
O
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
H
N
452
N
H
N
453
N
H
N
454
N
N
N
455
S
C
N
456
N
C
N
457
N
O
N
458
N
C
N
459
N
C
N
460
N
C
N
461
N
O
N
462
N
H
N
463
N
H
N
464
N
H
N
465
N
H
N
466
N
H
N
467
N
H
N
468
N
H
N
469
N
H
N
470
N
H
N
471
N
N
N
472
S
C
N
473
N
C
N
474
N
O
N
475
N
C
N
476
N
O
N
477
N
O
N
478
N
H
N
479
N
H
N
480
N
H
N
481
N
H
N
482
N
H
N
483
N
H
N
484
N
H
N
485
N
N
N
486
S
C
N
487
N
C
N
488
N
O
N
489
R
C
N
490
N
O
N
491
N
C
N
492
N
O
N
493
N
H
N
494
N
H
N
495
N
H
N
496
N
H
N
497
N
H
N
498
N
H
N
499
N
H
N
500
N
H
N
501
N
H
N
502
N
N
N
503
S
C
N
504
N
C
N
505
N
O
N
506
N
C
Y
507
N
C
Y
508
N
C
Y
509
N
C
Y
510
N
N
Y
511
N
C
Y
512
N
C
Y
513
N
C
Y
514
N
C
Y
515
N
C
N
516
N
O
N
517
N
H
N
518
N
H
N
519
N
H
N
520
N
H
N
521
N
H
N
522
N
H
N
523
N
H
N
524
N
H
N
525
N
H
N
526
N
H
N
527
N
H
N
528
N
H
N
529
N
N
N
530
S
C
N
531
N
C
N
532
N
O
N
533
N
C
Y
534
N
C
Y
535
N
C
Y
536
N
C
Y
537
N
C
Y
538
N
C
Y
539
N
C
N
540
N
O
N
541
N
O
N
542
N
H
N
543
N
H
N
544
N
H
N
545
N
H
N
546
N
H
N
547
N
H
N
548
N
H
N
549
N
H
N
550
N
H
N
551
N
H
N
552
N
H
N
553
N
N
N
554
S
C
N
555
N
C
N
556
N
O
N
557
N
C
N
558
N
C
N
559
N
C
N
560
N
O
N
561
N
H
N
562
N
H
N
563
N
H
N
564
N
H
N
565
N
H
N
566
N
H
N
567
N
H
N
568
N
H
N
569
N
H
N
570
N
H
N
571
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
doub
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
doub
N
13
N
sing
N
14
N
sing
N
15
N
doub
N
16
N
sing
N
17
N
doub
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
doub
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
doub
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
doub
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
doub
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
doub
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
doub
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
doub
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
Y
145
N
sing
Y
146
N
sing
Y
147
N
doub
N
148
N
sing
Y
149
N
sing
Y
150
N
sing
Y
151
N
doub
N
152
N
sing
Y
153
N
doub
N
154
N
sing
N
155
N
sing
Y
156
N
sing
Y
157
N
doub
N
158
N
sing
Y
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
doub
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
doub
N
186
N
sing
N
187
N
doub
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
doub
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
doub
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
Y
218
N
sing
Y
219
N
sing
Y
220
N
doub
N
221
N
sing
Y
222
N
sing
N
223
N
sing
Y
224
N
doub
N
225
N
doub
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
doub
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
doub
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
doub
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
doub
N
264
N
sing
N
265
N
sing
N
266
N
doub
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
doub
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
doub
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
doub
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
doub
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
doub
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
doub
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
Y
328
N
sing
Y
329
N
doub
Y
330
N
doub
N
331
N
sing
Y
332
N
sing
N
333
N
sing
Y
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
doub
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
doub
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
doub
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
doub
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
doub
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
Y
436
N
doub
Y
437
N
sing
Y
438
N
sing
N
439
N
sing
Y
440
N
doub
N
441
N
sing
Y
442
N
doub
N
443
N
sing
Y
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
doub
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
sing
N
464
N
sing
N
465
N
sing
N
466
N
sing
N
467
N
sing
N
468
N
sing
N
469
N
sing
N
470
N
sing
N
471
N
doub
N
472
N
sing
N
473
N
sing
N
474
N
sing
N
475
N
sing
N
476
N
sing
N
477
N
sing
N
478
N
sing
N
479
N
sing
N
480
N
sing
N
481
N
sing
N
482
N
sing
N
483
N
sing
N
484
N
doub
N
485
N
sing
N
486
N
sing
N
487
N
sing
N
488
N
sing
N
489
N
sing
N
490
N
sing
N
491
N
sing
N
492
N
sing
N
493
N
sing
N
494
N
sing
N
495
N
sing
N
496
N
sing
N
497
N
sing
N
498
N
sing
N
499
N
sing
N
500
N
doub
N
501
N
sing
N
502
N
sing
N
503
N
sing
N
504
N
sing
Y
505
N
doub
Y
506
N
sing
Y
507
N
sing
N
508
N
sing
Y
509
N
doub
Y
510
N
sing
Y
511
N
sing
N
512
N
sing
Y
513
N
sing
Y
514
N
doub
N
515
N
sing
Y
516
N
doub
N
517
N
sing
Y
518
N
sing
N
519
N
sing
N
520
N
sing
N
521
N
sing
N
522
N
sing
N
523
N
sing
N
524
N
sing
N
525
N
sing
N
526
N
sing
N
527
N
sing
N
528
N
doub
N
529
N
sing
N
530
N
sing
N
531
N
sing
N
532
N
sing
Y
533
N
doub
Y
534
N
sing
Y
535
N
sing
N
536
N
sing
Y
537
N
doub
N
538
N
sing
Y
539
N
doub
N
540
N
sing
Y
541
N
sing
N
542
N
sing
N
543
N
sing
N
544
N
sing
N
545
N
sing
N
546
N
sing
N
547
N
sing
N
548
N
sing
N
549
N
sing
N
550
N
sing
N
551
N
sing
N
552
N
doub
N
553
N
sing
N
554
N
sing
N
555
N
sing
N
556
N
sing
N
557
N
sing
N
558
N
sing
N
559
N
sing
N
560
N
sing
N
561
N
sing
N
562
N
sing
N
563
N
sing
UK
Nucleic Acids Res.
NARHAD
0389
1362-4962
47
11943
11955
10.1093/nar/gkz1017
31724709
Crystal structure of the EcoKMcrA N-terminal domain (NEco): recognition of modified cytosine bases without flipping.
2019
UK
Nucleic Acids Res.
NARHAD
0389
1362-4962
46
9829
9841
10.1093/nar/gky731
30107581
Activity and structure of EcoKMcrA.
2018
10.2210/pdb6t22/pdb
pdb_00006t22
100
1
N
PIXEL
2019-08-14
DECTRIS EIGER X 16M
SINGLE WAVELENGTH
M
x-ray
1
0.9195
1.0
P14 (MX2)
PETRA III, EMBL c/o DESY
0.9195
SYNCHROTRON
PETRA III, EMBL c/o DESY BEAMLINE P14 (MX2)
17368.604
EcoKMcrA modification dependent restriction endonuclease
3.1.21.-
2
man
polymer
3025.005
DNA (5'-D(*TP*CP*AP*TP*(5HC)P*GP*AP*TP*TP*C)-3')
2
man
polymer
3123.080
DNA (5'-D(*GP*AP*AP*TP*(5HC)P*GP*AP*TP*GP*A)-3')
2
man
polymer
18.015
water
405
nat
water
no
no
GHHHHHHEFMHVFDNNGIELKAECSIGEEDGVYGLILESWGPGDRNKDYNIALDYIIERLVDSGVSQVVVYLASSSVRKH
MHSLDERKIHPGEYFTLIGNSPRDIRLKMCGYQAYFSRTGRKEIPSGNRTKRILINVPGIYSDSFWASIIRG
GHHHHHHEFMHVFDNNGIELKAECSIGEEDGVYGLILESWGPGDRNKDYNIALDYIIERLVDSGVSQVVVYLASSSVRKH
MHSLDERKIHPGEYFTLIGNSPRDIRLKMCGYQAYFSRTGRKEIPSGNRTKRILINVPGIYSDSFWASIIRG
A,B
polypeptide(L)
no
yes
(DT)(DC)(DA)(DT)(5HC)(DG)(DA)(DT)(DT)(DC)
TCATXGATTC
C,E
polydeoxyribonucleotide
no
yes
(DG)(DA)(DA)(DT)(5HC)(DG)(DA)(DT)(DG)(DA)
GAATXGATGA
D,F
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
1
152
mcrA, rglA, b1159, JW1145
83333
Escherichia coli K-12
562
Escherichia coli
PLASMID
Biological sequence
PET15BM
sample
1
10
32630
synthetic construct
32630
synthetic construct
Biological sequence
sample
1
10
32630
synthetic construct
32630
synthetic construct
Biological sequence
1
3.09
60.15
VAPOR DIFFUSION, HANGING DROP
6.5
1.8 ul of protein-DNA solution (436:523 uM) was mixed with 2.2 ul of the F1 condition of the PACT premier crystal screen (MDL) (0.2 M Sodium fluoride, 0.1 M Bis-Tris propane, pH 6.5, 20% PEG 3350) and cryo-protected with an addition of 25% glycerol.
291
-6.389
1
20
C
1
D
10
-1.726
C_DT1:DA10_D
1
-16.448
-0.394
0.188
-0.317
-12.483
1
19
C
2
D
9
5.462
C_DC2:DG9_D
2
-7.036
0.712
0.076
-0.278
3.976
1
20
C
3
D
8
-0.875
C_DA3:DT8_D
3
-11.876
0.025
0.056
-0.121
-6.580
1
20
C
4
D
7
0.695
C_DT4:DA7_D
4
-22.697
0.120
0.221
-0.176
-3.154
1
19
C
5
D
6
0.137
C_5HC5:DG6_D
5
12.095
0.127
0.014
0.000
4.045
1
19
C
6
D
5
-1.159
C_DG6:5HC5_D
6
-20.457
-0.264
0.281
-0.165
-0.908
1
20
C
7
D
4
2.917
C_DA7:DT4_D
7
-17.551
-0.005
0.179
-0.055
1.425
1
20
C
8
D
3
4.931
C_DT8:DA3_D
8
-15.428
0.060
0.248
-0.002
0.866
1
20
C
9
D
2
1.079
C_DT9:DA2_D
9
-11.038
-0.143
0.108
-0.127
-5.510
1
19
C
10
D
1
2.699
C_DC10:DG1_D
10
-13.982
0.240
0.105
-0.131
5.026
1
20
E
1
F
10
10.715
E_DT1:DA10_F
11
-29.657
0.070
-0.098
-0.287
-2.927
1
19
E
2
F
9
1.995
E_DC2:DG9_F
12
-6.167
0.202
-0.164
-0.443
-5.472
1
20
E
3
F
8
-1.103
E_DA3:DT8_F
13
-6.439
-0.092
-0.161
-0.002
-4.379
1
20
E
4
F
7
0.646
E_DT4:DA7_F
14
-23.766
-0.119
0.253
-0.179
-5.349
1
19
E
5
F
6
-0.419
E_5HC5:DG6_F
15
13.528
0.021
0.135
-0.056
3.209
1
19
E
6
F
5
1.498
E_DG6:5HC5_F
16
-25.627
-0.156
0.152
-0.152
-3.736
1
20
E
7
F
4
4.916
E_DA7:DT4_F
17
-19.725
-0.068
0.166
0.003
0.905
1
20
E
8
F
3
2.880
E_DT8:DA3_F
18
-15.068
-0.035
0.139
-0.119
8.200
1
20
E
9
F
2
1.581
E_DT9:DA2_F
19
-16.151
-0.272
-0.224
-0.335
30.472
1
19
E
10
F
1
2.163
E_DC10:DG1_F
20
-24.059
0.721
-0.729
-0.194
3.677
41.982
C
C
1
2
3.043
D
D
10
9
3.612
2.176
0.775
0.180
CC_DT1DC2:DG9DA10_DD
1
4.451
-6.226
41.701
-0.002
-0.564
3.351
30.190
C
C
2
3
10.424
D
D
9
8
3.127
5.401
-0.474
1.483
CC_DC2DA3:DT8DG9_DD
2
-0.882
1.703
29.701
1.751
0.732
3.624
37.696
C
C
3
4
-9.608
D
D
8
7
3.555
-6.181
-0.418
-0.645
CC_DA3DT4:DA7DT8_DD
3
-1.186
1.844
37.185
-0.113
0.477
3.832
34.694
C
C
4
5
0.820
D
D
7
6
3.650
0.488
1.631
1.010
CC_DT45HC5:DG6DA7_DD
4
4.272
-7.181
34.435
1.608
-1.983
3.191
35.026
C
C
5
6
-8.919
D
D
6
5
3.293
-5.347
-1.157
0.683
CC_5HC5DG6:5HC5DG6_DD
5
-1.142
1.904
34.610
1.937
1.751
3.323
39.817
C
C
6
7
-3.261
D
D
5
4
3.310
-2.220
0.346
-0.238
CC_DG6DA7:DT45HC5_DD
6
0.696
-1.022
39.752
-0.088
-0.426
3.249
34.760
C
C
7
8
-6.794
D
D
4
3
3.230
-4.049
-0.049
-0.354
CC_DA7DT8:DA3DT4_DD
7
-1.310
2.198
34.507
0.022
-0.117
3.277
41.558
C
C
8
9
-8.847
D
D
3
2
3.304
-6.254
0.469
0.069
CC_DT8DT9:DA2DA3_DD
8
1.910
-2.703
41.062
0.769
-0.456
3.489
38.043
C
C
9
10
-7.488
D
D
2
1
3.449
-4.868
0.308
-0.512
CC_DT9DC10:DG1DA2_DD
9
0.502
-0.772
37.739
-0.127
-0.404
3.799
39.387
E
E
1
2
9.366
F
F
10
9
3.804
6.285
0.369
0.397
EE_DT1DC2:DG9DA10_FF
10
-1.850
2.756
38.860
-0.282
-0.803
3.524
38.273
E
E
2
3
7.408
F
F
9
8
3.437
4.845
-0.172
0.959
EE_DC2DA3:DT8DG9_FF
11
0.783
-1.198
37.968
0.813
0.367
3.423
34.053
E
E
3
4
-8.262
F
F
8
7
3.334
-4.819
-0.729
-0.547
EE_DA3DT4:DA7DT8_FF
12
-2.658
4.557
33.619
-0.136
0.805
3.997
34.438
E
E
4
5
2.244
F
F
7
6
3.863
1.327
1.516
0.973
EE_DT45HC5:DG6DA7_FF
13
2.595
-4.389
34.318
1.396
-2.074
3.151
35.390
E
E
5
6
-8.252
F
F
6
5
3.300
-5.000
-1.120
0.714
EE_5HC5DG6:5HC5DG6_FF
14
0.671
-1.107
35.040
1.904
1.941
3.376
38.378
E
E
6
7
-2.334
F
F
5
4
3.376
-1.534
0.381
-0.242
EE_DG6DA7:DT45HC5_FF
15
-0.620
0.943
38.344
-0.171
-0.659
3.182
32.593
E
E
7
8
-3.996
F
F
4
3
3.157
-2.240
-0.237
-0.377
EE_DA7DT8:DA3DT4_FF
16
-1.317
2.348
32.492
-0.293
0.201
3.190
38.668
E
E
8
9
3.991
F
F
3
2
3.031
2.623
0.910
0.691
EE_DT8DT9:DA2DA3_FF
17
8.043
-12.239
37.766
0.733
-0.422
2.769
39.459
E
E
9
10
0.173
F
F
2
1
2.781
0.116
0.119
1.649
EE_DT9DC10:DG1DA2_FF
18
6.622
-9.851
38.921
2.431
0.492
citation
citation
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
repository
Initial release
Database references
Database references
Data collection
Database references
Refinement description
1
0
2019-10-30
1
1
2019-11-27
1
2
2019-12-18
1
3
2024-01-24
_citation.country
_citation.journal_abbrev
_citation.journal_id_ASTM
_citation.journal_id_CSD
_citation.journal_id_ISSN
_citation.pdbx_database_id_DOI
_citation.pdbx_database_id_PubMed
_citation.title
_citation.year
_citation.journal_volume
_citation.page_first
_citation.page_last
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
Crystal structure of full-length dimeric EcoKMcrA restriction endonuclease
Crystal structure of N-terminal (NEco) domain of EcoKMcrA in complex with C5mCGG target sequence
Crystal structure of the N-terminal domain of EcoKMcrA restriction endonuclease (NEco) in complex with T5mCGA target sequence
N
PDBE
Y
PDBE
2019-10-07
REL
REL
1
A
O
HOH
344
5.96
5HC
5HC
SUBJECT OF INVESTIGATION
HOH
water
Y
6GHC
PDB
experimental model
HOH
262
4
HOH
HOH
201
A
HOH
236
4
HOH
HOH
202
A
HOH
163
4
HOH
HOH
203
A
HOH
229
4
HOH
HOH
204
A
HOH
220
4
HOH
HOH
205
A
HOH
206
4
HOH
HOH
206
A
HOH
183
4
HOH
HOH
207
A
HOH
24
4
HOH
HOH
208
A
HOH
12
4
HOH
HOH
209
A
HOH
39
4
HOH
HOH
210
A
HOH
118
4
HOH
HOH
211
A
HOH
205
4
HOH
HOH
212
A
HOH
23
4
HOH
HOH
213
A
HOH
254
4
HOH
HOH
214
A
HOH
84
4
HOH
HOH
215
A
HOH
186
4
HOH
HOH
216
A
HOH
158
4
HOH
HOH
217
A
HOH
151
4
HOH
HOH
218
A
HOH
165
4
HOH
HOH
219
A
HOH
53
4
HOH
HOH
220
A
HOH
350
4
HOH
HOH
221
A
HOH
156
4
HOH
HOH
222
A
HOH
33
4
HOH
HOH
223
A
HOH
126
4
HOH
HOH
224
A
HOH
17
4
HOH
HOH
225
A
HOH
31
4
HOH
HOH
226
A
HOH
80
4
HOH
HOH
227
A
HOH
44
4
HOH
HOH
228
A
HOH
112
4
HOH
HOH
229
A
HOH
26
4
HOH
HOH
230
A
HOH
6
4
HOH
HOH
231
A
HOH
9
4
HOH
HOH
232
A
HOH
129
4
HOH
HOH
233
A
HOH
88
4
HOH
HOH
234
A
HOH
122
4
HOH
HOH
235
A
HOH
152
4
HOH
HOH
236
A
HOH
119
4
HOH
HOH
237
A
HOH
426
4
HOH
HOH
238
A
HOH
43
4
HOH
HOH
239
A
HOH
167
4
HOH
HOH
240
A
HOH
263
4
HOH
HOH
241
A
HOH
415
4
HOH
HOH
242
A
HOH
301
4
HOH
HOH
243
A
HOH
219
4
HOH
HOH
244
A
HOH
169
4
HOH
HOH
245
A
HOH
166
4
HOH
HOH
246
A
HOH
3
4
HOH
HOH
247
A
HOH
190
4
HOH
HOH
248
A
HOH
7
4
HOH
HOH
249
A
HOH
22
4
HOH
HOH
250
A
HOH
120
4
HOH
HOH
251
A
HOH
29
4
HOH
HOH
252
A
HOH
28
4
HOH
HOH
253
A
HOH
81
4
HOH
HOH
254
A
HOH
243
4
HOH
HOH
255
A
HOH
423
4
HOH
HOH
256
A
HOH
185
4
HOH
HOH
257
A
HOH
83
4
HOH
HOH
258
A
HOH
349
4
HOH
HOH
259
A
HOH
86
4
HOH
HOH
260
A
HOH
117
4
HOH
HOH
261
A
HOH
382
4
HOH
HOH
262
A
HOH
200
4
HOH
HOH
263
A
HOH
130
4
HOH
HOH
264
A
HOH
363
4
HOH
HOH
265
A
HOH
414
4
HOH
HOH
266
A
HOH
21
4
HOH
HOH
267
A
HOH
57
4
HOH
HOH
268
A
HOH
181
4
HOH
HOH
269
A
HOH
178
4
HOH
HOH
270
A
HOH
361
4
HOH
HOH
271
A
HOH
213
4
HOH
HOH
272
A
HOH
148
4
HOH
HOH
273
A
HOH
128
4
HOH
HOH
274
A
HOH
77
4
HOH
HOH
275
A
HOH
164
4
HOH
HOH
276
A
HOH
87
4
HOH
HOH
277
A
HOH
307
4
HOH
HOH
278
A
HOH
218
4
HOH
HOH
279
A
HOH
20
4
HOH
HOH
280
A
HOH
179
4
HOH
HOH
281
A
HOH
127
4
HOH
HOH
282
A
HOH
115
4
HOH
HOH
283
A
HOH
207
4
HOH
HOH
284
A
HOH
373
4
HOH
HOH
285
A
HOH
215
4
HOH
HOH
286
A
HOH
410
4
HOH
HOH
287
A
HOH
365
4
HOH
HOH
288
A
HOH
58
4
HOH
HOH
289
A
HOH
474
4
HOH
HOH
290
A
HOH
113
4
HOH
HOH
291
A
HOH
145
4
HOH
HOH
292
A
HOH
296
4
HOH
HOH
293
A
HOH
146
4
HOH
HOH
294
A
HOH
153
4
HOH
HOH
295
A
HOH
362
4
HOH
HOH
296
A
HOH
210
4
HOH
HOH
297
A
HOH
85
4
HOH
HOH
298
A
HOH
409
4
HOH
HOH
299
A
HOH
211
4
HOH
HOH
300
A
HOH
182
4
HOH
HOH
301
A
HOH
157
4
HOH
HOH
302
A
HOH
355
4
HOH
HOH
303
A
HOH
40
4
HOH
HOH
304
A
HOH
428
4
HOH
HOH
305
A
HOH
328
4
HOH
HOH
306
A
HOH
147
4
HOH
HOH
307
A
HOH
308
4
HOH
HOH
308
A
HOH
250
4
HOH
HOH
309
A
HOH
341
4
HOH
HOH
310
A
HOH
217
4
HOH
HOH
311
A
HOH
311
4
HOH
HOH
312
A
HOH
357
4
HOH
HOH
313
A
HOH
466
4
HOH
HOH
314
A
HOH
265
4
HOH
HOH
315
A
HOH
381
4
HOH
HOH
316
A
HOH
290
4
HOH
HOH
317
A
HOH
204
4
HOH
HOH
318
A
HOH
116
4
HOH
HOH
319
A
HOH
184
4
HOH
HOH
320
A
HOH
413
4
HOH
HOH
321
A
HOH
228
4
HOH
HOH
322
A
HOH
338
4
HOH
HOH
323
A
HOH
103
4
HOH
HOH
324
A
HOH
331
4
HOH
HOH
325
A
HOH
353
4
HOH
HOH
326
A
HOH
342
4
HOH
HOH
327
A
HOH
351
4
HOH
HOH
328
A
HOH
144
4
HOH
HOH
329
A
HOH
266
4
HOH
HOH
330
A
HOH
155
4
HOH
HOH
331
A
HOH
124
4
HOH
HOH
332
A
HOH
216
4
HOH
HOH
333
A
HOH
366
4
HOH
HOH
334
A
HOH
471
4
HOH
HOH
335
A
HOH
291
4
HOH
HOH
336
A
HOH
347
4
HOH
HOH
337
A
HOH
251
4
HOH
HOH
338
A
HOH
214
4
HOH
HOH
339
A
HOH
352
4
HOH
HOH
340
A
HOH
292
4
HOH
HOH
341
A
HOH
422
4
HOH
HOH
342
A
HOH
411
4
HOH
HOH
343
A
HOH
354
4
HOH
HOH
344
A
HOH
233
4
HOH
HOH
201
B
HOH
203
4
HOH
HOH
202
B
HOH
136
4
HOH
HOH
203
B
HOH
73
4
HOH
HOH
204
B
HOH
287
4
HOH
HOH
205
B
HOH
453
4
HOH
HOH
206
B
HOH
137
4
HOH
HOH
207
B
HOH
401
4
HOH
HOH
208
B
HOH
477
4
HOH
HOH
209
B
HOH
5
4
HOH
HOH
210
B
HOH
482
4
HOH
HOH
211
B
HOH
108
4
HOH
HOH
212
B
HOH
133
4
HOH
HOH
213
B
HOH
59
4
HOH
HOH
214
B
HOH
486
4
HOH
HOH
215
B
HOH
90
4
HOH
HOH
216
B
HOH
51
4
HOH
HOH
217
B
HOH
89
4
HOH
HOH
218
B
HOH
61
4
HOH
HOH
219
B
HOH
346
4
HOH
HOH
220
B
HOH
302
4
HOH
HOH
221
B
HOH
74
4
HOH
HOH
222
B
HOH
280
4
HOH
HOH
223
B
HOH
10
4
HOH
HOH
224
B
HOH
257
4
HOH
HOH
225
B
HOH
56
4
HOH
HOH
226
B
HOH
425
4
HOH
HOH
227
B
HOH
15
4
HOH
HOH
228
B
HOH
18
4
HOH
HOH
229
B
HOH
369
4
HOH
HOH
230
B
HOH
38
4
HOH
HOH
231
B
HOH
92
4
HOH
HOH
232
B
HOH
221
4
HOH
HOH
233
B
HOH
66
4
HOH
HOH
234
B
HOH
293
4
HOH
HOH
235
B
HOH
192
4
HOH
HOH
236
B
HOH
94
4
HOH
HOH
237
B
HOH
430
4
HOH
HOH
238
B
HOH
134
4
HOH
HOH
239
B
HOH
46
4
HOH
HOH
240
B
HOH
195
4
HOH
HOH
241
B
HOH
16
4
HOH
HOH
242
B
HOH
323
4
HOH
HOH
243
B
HOH
54
4
HOH
HOH
244
B
HOH
47
4
HOH
HOH
245
B
HOH
303
4
HOH
HOH
246
B
HOH
75
4
HOH
HOH
247
B
HOH
91
4
HOH
HOH
248
B
HOH
288
4
HOH
HOH
249
B
HOH
62
4
HOH
HOH
250
B
HOH
107
4
HOH
HOH
251
B
HOH
139
4
HOH
HOH
252
B
HOH
63
4
HOH
HOH
253
B
HOH
316
4
HOH
HOH
254
B
HOH
14
4
HOH
HOH
255
B
HOH
70
4
HOH
HOH
256
B
HOH
138
4
HOH
HOH
257
B
HOH
93
4
HOH
HOH
258
B
HOH
310
4
HOH
HOH
259
B
HOH
305
4
HOH
HOH
260
B
HOH
436
4
HOH
HOH
261
B
HOH
34
4
HOH
HOH
262
B
HOH
30
4
HOH
HOH
263
B
HOH
209
4
HOH
HOH
264
B
HOH
315
4
HOH
HOH
265
B
HOH
71
4
HOH
HOH
266
B
HOH
106
4
HOH
HOH
267
B
HOH
429
4
HOH
HOH
268
B
HOH
55
4
HOH
HOH
269
B
HOH
67
4
HOH
HOH
270
B
HOH
104
4
HOH
HOH
271
B
HOH
309
4
HOH
HOH
272
B
HOH
249
4
HOH
HOH
273
B
HOH
4
4
HOH
HOH
274
B
HOH
19
4
HOH
HOH
275
B
HOH
187
4
HOH
HOH
276
B
HOH
286
4
HOH
HOH
277
B
HOH
65
4
HOH
HOH
278
B
HOH
376
4
HOH
HOH
279
B
HOH
258
4
HOH
HOH
280
B
HOH
101
4
HOH
HOH
281
B
HOH
197
4
HOH
HOH
282
B
HOH
45
4
HOH
HOH
283
B
HOH
105
4
HOH
HOH
284
B
HOH
109
4
HOH
HOH
285
B
HOH
278
4
HOH
HOH
286
B
HOH
69
4
HOH
HOH
287
B
HOH
140
4
HOH
HOH
288
B
HOH
299
4
HOH
HOH
289
B
HOH
398
4
HOH
HOH
290
B
HOH
248
4
HOH
HOH
291
B
HOH
268
4
HOH
HOH
292
B
HOH
399
4
HOH
HOH
293
B
HOH
358
4
HOH
HOH
294
B
HOH
283
4
HOH
HOH
295
B
HOH
222
4
HOH
HOH
296
B
HOH
199
4
HOH
HOH
297
B
HOH
27
4
HOH
HOH
298
B
HOH
476
4
HOH
HOH
299
B
HOH
372
4
HOH
HOH
300
B
HOH
242
4
HOH
HOH
301
B
HOH
313
4
HOH
HOH
302
B
HOH
95
4
HOH
HOH
303
B
HOH
456
4
HOH
HOH
304
B
HOH
98
4
HOH
HOH
305
B
HOH
68
4
HOH
HOH
306
B
HOH
443
4
HOH
HOH
307
B
HOH
150
4
HOH
HOH
308
B
HOH
60
4
HOH
HOH
309
B
HOH
259
4
HOH
HOH
310
B
HOH
225
4
HOH
HOH
311
B
HOH
314
4
HOH
HOH
312
B
HOH
48
4
HOH
HOH
313
B
HOH
36
4
HOH
HOH
314
B
HOH
368
4
HOH
HOH
315
B
HOH
317
4
HOH
HOH
316
B
HOH
37
4
HOH
HOH
317
B
HOH
269
4
HOH
HOH
318
B
HOH
224
4
HOH
HOH
319
B
HOH
439
4
HOH
HOH
320
B
HOH
370
4
HOH
HOH
321
B
HOH
395
4
HOH
HOH
322
B
HOH
272
4
HOH
HOH
323
B
HOH
198
4
HOH
HOH
324
B
HOH
367
4
HOH
HOH
325
B
HOH
371
4
HOH
HOH
326
B
HOH
289
4
HOH
HOH
327
B
HOH
202
4
HOH
HOH
328
B
HOH
345
4
HOH
HOH
329
B
HOH
253
4
HOH
HOH
330
B
HOH
344
4
HOH
HOH
331
B
HOH
196
4
HOH
HOH
332
B
HOH
437
4
HOH
HOH
333
B
HOH
273
4
HOH
HOH
334
B
HOH
208
4
HOH
HOH
335
B
HOH
481
4
HOH
HOH
336
B
HOH
41
4
HOH
HOH
337
B
HOH
191
4
HOH
HOH
338
B
HOH
241
4
HOH
HOH
339
B
HOH
427
4
HOH
HOH
340
B
HOH
444
4
HOH
HOH
341
B
HOH
114
4
HOH
HOH
342
B
HOH
374
4
HOH
HOH
343
B
HOH
451
4
HOH
HOH
344
B
HOH
364
4
HOH
HOH
345
B
HOH
297
4
HOH
HOH
346
B
HOH
235
4
HOH
HOH
347
B
HOH
306
4
HOH
HOH
348
B
HOH
400
4
HOH
HOH
349
B
HOH
271
4
HOH
HOH
350
B
HOH
337
4
HOH
HOH
351
B
HOH
449
4
HOH
HOH
352
B
HOH
464
4
HOH
HOH
353
B
HOH
149
4
HOH
HOH
354
B
HOH
435
4
HOH
HOH
355
B
HOH
252
4
HOH
HOH
356
B
HOH
450
4
HOH
HOH
357
B
HOH
240
4
HOH
HOH
358
B
HOH
434
4
HOH
HOH
359
B
HOH
465
4
HOH
HOH
360
B
HOH
284
4
HOH
HOH
361
B
HOH
457
4
HOH
HOH
362
B
HOH
285
4
HOH
HOH
363
B
HOH
142
4
HOH
HOH
364
B
HOH
154
4
HOH
HOH
365
B
HOH
281
4
HOH
HOH
366
B
HOH
143
4
HOH
HOH
367
B
HOH
110
4
HOH
HOH
368
B
HOH
102
4
HOH
HOH
369
B
HOH
442
4
HOH
HOH
370
B
HOH
438
4
HOH
HOH
371
B
HOH
141
4
HOH
HOH
372
B
HOH
424
4
HOH
HOH
373
B
HOH
461
4
HOH
HOH
374
B
HOH
194
4
HOH
HOH
375
B
HOH
459
4
HOH
HOH
376
B
HOH
329
4
HOH
HOH
101
C
HOH
8
4
HOH
HOH
102
C
HOH
160
4
HOH
HOH
103
C
HOH
384
4
HOH
HOH
104
C
HOH
121
4
HOH
HOH
105
C
HOH
324
4
HOH
HOH
106
C
HOH
478
4
HOH
HOH
107
C
HOH
173
4
HOH
HOH
108
C
HOH
42
4
HOH
HOH
109
C
HOH
175
4
HOH
HOH
110
C
HOH
480
4
HOH
HOH
111
C
HOH
161
4
HOH
HOH
112
C
HOH
172
4
HOH
HOH
113
C
HOH
407
4
HOH
HOH
114
C
HOH
405
4
HOH
HOH
115
C
HOH
125
4
HOH
HOH
116
C
HOH
330
4
HOH
HOH
117
C
HOH
260
4
HOH
HOH
118
C
HOH
485
4
HOH
HOH
119
C
HOH
300
4
HOH
HOH
120
C
HOH
383
4
HOH
HOH
121
C
HOH
159
4
HOH
HOH
122
C
HOH
408
4
HOH
HOH
123
C
HOH
174
4
HOH
HOH
124
C
HOH
123
4
HOH
HOH
125
C
HOH
32
4
HOH
HOH
126
C
HOH
171
4
HOH
HOH
101
D
HOH
403
4
HOH
HOH
102
D
HOH
168
4
HOH
HOH
103
D
HOH
176
4
HOH
HOH
104
D
HOH
82
4
HOH
HOH
105
D
HOH
419
4
HOH
HOH
106
D
HOH
472
4
HOH
HOH
107
D
HOH
326
4
HOH
HOH
108
D
HOH
177
4
HOH
HOH
109
D
HOH
325
4
HOH
HOH
110
D
HOH
256
4
HOH
HOH
111
D
HOH
255
4
HOH
HOH
112
D
HOH
162
4
HOH
HOH
113
D
HOH
417
4
HOH
HOH
114
D
HOH
327
4
HOH
HOH
115
D
HOH
180
4
HOH
HOH
116
D
HOH
332
4
HOH
HOH
117
D
HOH
295
4
HOH
HOH
118
D
HOH
406
4
HOH
HOH
119
D
HOH
170
4
HOH
HOH
120
D
HOH
333
4
HOH
HOH
121
D
HOH
467
4
HOH
HOH
101
E
HOH
393
4
HOH
HOH
102
E
HOH
131
4
HOH
HOH
103
E
HOH
11
4
HOH
HOH
104
E
HOH
35
4
HOH
HOH
105
E
HOH
247
4
HOH
HOH
106
E
HOH
132
4
HOH
HOH
107
E
HOH
264
4
HOH
HOH
108
E
HOH
2
4
HOH
HOH
109
E
HOH
1
4
HOH
HOH
110
E
HOH
391
4
HOH
HOH
111
E
HOH
389
4
HOH
HOH
112
E
HOH
135
4
HOH
HOH
113
E
HOH
193
4
HOH
HOH
114
E
HOH
394
4
HOH
HOH
115
E
HOH
433
4
HOH
HOH
116
E
HOH
270
4
HOH
HOH
117
E
HOH
97
4
HOH
HOH
101
F
HOH
483
4
HOH
HOH
102
F
HOH
188
4
HOH
HOH
103
F
HOH
72
4
HOH
HOH
104
F
HOH
189
4
HOH
HOH
105
F
HOH
96
4
HOH
HOH
106
F
HOH
392
4
HOH
HOH
107
F
HOH
76
4
HOH
HOH
108
F
HOH
390
4
HOH
HOH
109
F
HOH
245
4
HOH
HOH
110
F
HOH
25
4
HOH
HOH
111
F
HOH
277
4
HOH
HOH
112
F
HOH
335
4
HOH
HOH
113
F
HOH
334
4
HOH
HOH
114
F
HOH
463
4
HOH
HOH
115
F
HOH
462
4
HOH
HOH
116
F
HOH
432
4
HOH
HOH
117
F
HOH
298
4
HOH
HOH
118
F
HOH
275
4
HOH
HOH
119
F
HOH
322
4
HOH
HOH
120
F
HOH
441
4
HOH
HOH
121
F
n
1
-8
A
n
2
-7
A
n
3
-6
A
n
4
-5
A
n
5
-4
A
n
6
-3
A
n
7
-2
A
GLU
-1
n
8
GLU
-1
A
PHE
0
n
9
PHE
0
A
MET
1
n
10
MET
1
A
HIS
2
n
11
HIS
2
A
VAL
3
n
12
VAL
3
A
PHE
4
n
13
PHE
4
A
ASP
5
n
14
ASP
5
A
ASN
6
n
15
ASN
6
A
ASN
7
n
16
ASN
7
A
GLY
8
n
17
GLY
8
A
ILE
9
n
18
ILE
9
A
GLU
10
n
19
GLU
10
A
LEU
11
n
20
LEU
11
A
LYS
12
n
21
LYS
12
A
ALA
13
n
22
ALA
13
A
GLU
14
n
23
GLU
14
A
CYS
15
n
24
CYS
15
A
SER
16
n
25
SER
16
A
ILE
17
n
26
ILE
17
A
GLY
18
n
27
GLY
18
A
GLU
19
n
28
GLU
19
A
GLU
20
n
29
GLU
20
A
ASP
21
n
30
ASP
21
A
GLY
22
n
31
GLY
22
A
VAL
23
n
32
VAL
23
A
TYR
24
n
33
TYR
24
A
GLY
25
n
34
GLY
25
A
LEU
26
n
35
LEU
26
A
ILE
27
n
36
ILE
27
A
LEU
28
n
37
LEU
28
A
GLU
29
n
38
GLU
29
A
SER
30
n
39
SER
30
A
TRP
31
n
40
TRP
31
A
GLY
32
n
41
GLY
32
A
PRO
33
n
42
PRO
33
A
GLY
34
n
43
GLY
34
A
ASP
35
n
44
ASP
35
A
ARG
36
n
45
ARG
36
A
ASN
37
n
46
ASN
37
A
LYS
38
n
47
LYS
38
A
ASP
39
n
48
ASP
39
A
TYR
40
n
49
TYR
40
A
ASN
41
n
50
ASN
41
A
ILE
42
n
51
ILE
42
A
ALA
43
n
52
ALA
43
A
LEU
44
n
53
LEU
44
A
ASP
45
n
54
ASP
45
A
TYR
46
n
55
TYR
46
A
ILE
47
n
56
ILE
47
A
ILE
48
n
57
ILE
48
A
GLU
49
n
58
GLU
49
A
ARG
50
n
59
ARG
50
A
LEU
51
n
60
LEU
51
A
VAL
52
n
61
VAL
52
A
ASP
53
n
62
ASP
53
A
SER
54
n
63
SER
54
A
GLY
55
n
64
GLY
55
A
VAL
56
n
65
VAL
56
A
SER
57
n
66
SER
57
A
GLN
58
n
67
GLN
58
A
VAL
59
n
68
VAL
59
A
VAL
60
n
69
VAL
60
A
VAL
61
n
70
VAL
61
A
TYR
62
n
71
TYR
62
A
LEU
63
n
72
LEU
63
A
ALA
64
n
73
ALA
64
A
SER
65
n
74
SER
65
A
SER
66
n
75
SER
66
A
SER
67
n
76
SER
67
A
VAL
68
n
77
VAL
68
A
ARG
69
n
78
ARG
69
A
LYS
70
n
79
LYS
70
A
HIS
71
n
80
HIS
71
A
MET
72
n
81
MET
72
A
HIS
73
n
82
HIS
73
A
SER
74
n
83
SER
74
A
LEU
75
n
84
LEU
75
A
ASP
76
n
85
ASP
76
A
GLU
77
n
86
GLU
77
A
ARG
78
n
87
ARG
78
A
LYS
79
n
88
LYS
79
A
ILE
80
n
89
ILE
80
A
HIS
81
n
90
HIS
81
A
PRO
82
n
91
PRO
82
A
GLY
83
n
92
GLY
83
A
GLU
84
n
93
GLU
84
A
TYR
85
n
94
TYR
85
A
PHE
86
n
95
PHE
86
A
THR
87
n
96
THR
87
A
LEU
88
n
97
LEU
88
A
ILE
89
n
98
ILE
89
A
GLY
90
n
99
GLY
90
A
ASN
91
n
100
ASN
91
A
SER
92
n
101
SER
92
A
PRO
93
n
102
PRO
93
A
ARG
94
n
103
ARG
94
A
ASP
95
n
104
ASP
95
A
ILE
96
n
105
ILE
96
A
ARG
97
n
106
ARG
97
A
LEU
98
n
107
LEU
98
A
LYS
99
n
108
LYS
99
A
MET
100
n
109
MET
100
A
CYS
101
n
110
CYS
101
A
GLY
102
n
111
GLY
102
A
TYR
103
n
112
TYR
103
A
GLN
104
n
113
GLN
104
A
ALA
105
n
114
ALA
105
A
TYR
106
n
115
TYR
106
A
PHE
107
n
116
PHE
107
A
SER
108
n
117
SER
108
A
ARG
109
n
118
ARG
109
A
THR
110
n
119
THR
110
A
GLY
111
n
120
GLY
111
A
ARG
112
n
121
ARG
112
A
LYS
113
n
122
LYS
113
A
GLU
114
n
123
GLU
114
A
ILE
115
n
124
ILE
115
A
PRO
116
n
125
PRO
116
A
SER
117
n
126
SER
117
A
GLY
118
n
127
GLY
118
A
ASN
119
n
128
ASN
119
A
ARG
120
n
129
ARG
120
A
THR
121
n
130
THR
121
A
LYS
122
n
131
LYS
122
A
ARG
123
n
132
ARG
123
A
ILE
124
n
133
ILE
124
A
LEU
125
n
134
LEU
125
A
ILE
126
n
135
ILE
126
A
ASN
127
n
136
ASN
127
A
VAL
128
n
137
VAL
128
A
PRO
129
n
138
PRO
129
A
GLY
130
n
139
GLY
130
A
ILE
131
n
140
ILE
131
A
TYR
132
n
141
TYR
132
A
SER
133
n
142
SER
133
A
ASP
134
n
143
ASP
134
A
SER
135
n
144
SER
135
A
PHE
136
n
145
PHE
136
A
TRP
137
n
146
TRP
137
A
ALA
138
n
147
ALA
138
A
SER
139
n
148
SER
139
A
ILE
140
n
149
ILE
140
A
ILE
141
n
150
ILE
141
A
ARG
142
n
151
ARG
142
A
GLY
143
n
152
GLY
143
A
n
1
-8
B
n
2
-7
B
n
3
-6
B
n
4
-5
B
n
5
-4
B
n
6
-3
B
n
7
-2
B
GLU
-1
n
8
GLU
-1
B
PHE
0
n
9
PHE
0
B
MET
1
n
10
MET
1
B
HIS
2
n
11
HIS
2
B
VAL
3
n
12
VAL
3
B
PHE
4
n
13
PHE
4
B
ASP
5
n
14
ASP
5
B
ASN
6
n
15
ASN
6
B
ASN
7
n
16
ASN
7
B
GLY
8
n
17
GLY
8
B
ILE
9
n
18
ILE
9
B
GLU
10
n
19
GLU
10
B
LEU
11
n
20
LEU
11
B
LYS
12
n
21
LYS
12
B
ALA
13
n
22
ALA
13
B
GLU
14
n
23
GLU
14
B
CYS
15
n
24
CYS
15
B
SER
16
n
25
SER
16
B
ILE
17
n
26
ILE
17
B
GLY
18
n
27
GLY
18
B
GLU
19
n
28
GLU
19
B
GLU
20
n
29
GLU
20
B
ASP
21
n
30
ASP
21
B
GLY
22
n
31
GLY
22
B
VAL
23
n
32
VAL
23
B
TYR
24
n
33
TYR
24
B
GLY
25
n
34
GLY
25
B
LEU
26
n
35
LEU
26
B
ILE
27
n
36
ILE
27
B
LEU
28
n
37
LEU
28
B
GLU
29
n
38
GLU
29
B
SER
30
n
39
SER
30
B
TRP
31
n
40
TRP
31
B
GLY
32
n
41
GLY
32
B
PRO
33
n
42
PRO
33
B
GLY
34
n
43
GLY
34
B
ASP
35
n
44
ASP
35
B
ARG
36
n
45
ARG
36
B
ASN
37
n
46
ASN
37
B
LYS
38
n
47
LYS
38
B
ASP
39
n
48
ASP
39
B
TYR
40
n
49
TYR
40
B
ASN
41
n
50
ASN
41
B
ILE
42
n
51
ILE
42
B
ALA
43
n
52
ALA
43
B
LEU
44
n
53
LEU
44
B
ASP
45
n
54
ASP
45
B
TYR
46
n
55
TYR
46
B
ILE
47
n
56
ILE
47
B
ILE
48
n
57
ILE
48
B
GLU
49
n
58
GLU
49
B
ARG
50
n
59
ARG
50
B
LEU
51
n
60
LEU
51
B
VAL
52
n
61
VAL
52
B
ASP
53
n
62
ASP
53
B
SER
54
n
63
SER
54
B
GLY
55
n
64
GLY
55
B
VAL
56
n
65
VAL
56
B
SER
57
n
66
SER
57
B
GLN
58
n
67
GLN
58
B
VAL
59
n
68
VAL
59
B
VAL
60
n
69
VAL
60
B
VAL
61
n
70
VAL
61
B
TYR
62
n
71
TYR
62
B
LEU
63
n
72
LEU
63
B
ALA
64
n
73
ALA
64
B
SER
65
n
74
SER
65
B
SER
66
n
75
SER
66
B
SER
67
n
76
SER
67
B
VAL
68
n
77
VAL
68
B
ARG
69
n
78
ARG
69
B
LYS
70
n
79
LYS
70
B
HIS
71
n
80
HIS
71
B
MET
72
n
81
MET
72
B
HIS
73
n
82
HIS
73
B
SER
74
n
83
SER
74
B
LEU
75
n
84
LEU
75
B
ASP
76
n
85
ASP
76
B
GLU
77
n
86
GLU
77
B
ARG
78
n
87
ARG
78
B
LYS
79
n
88
LYS
79
B
ILE
80
n
89
ILE
80
B
HIS
81
n
90
HIS
81
B
PRO
82
n
91
PRO
82
B
GLY
83
n
92
GLY
83
B
GLU
84
n
93
GLU
84
B
TYR
85
n
94
TYR
85
B
PHE
86
n
95
PHE
86
B
THR
87
n
96
THR
87
B
LEU
88
n
97
LEU
88
B
ILE
89
n
98
ILE
89
B
GLY
90
n
99
GLY
90
B
ASN
91
n
100
ASN
91
B
SER
92
n
101
SER
92
B
PRO
93
n
102
PRO
93
B
ARG
94
n
103
ARG
94
B
ASP
95
n
104
ASP
95
B
ILE
96
n
105
ILE
96
B
ARG
97
n
106
ARG
97
B
LEU
98
n
107
LEU
98
B
LYS
99
n
108
LYS
99
B
MET
100
n
109
MET
100
B
CYS
101
n
110
CYS
101
B
GLY
102
n
111
GLY
102
B
TYR
103
n
112
TYR
103
B
GLN
104
n
113
GLN
104
B
ALA
105
n
114
ALA
105
B
TYR
106
n
115
TYR
106
B
PHE
107
n
116
PHE
107
B
SER
108
n
117
SER
108
B
ARG
109
n
118
ARG
109
B
THR
110
n
119
THR
110
B
GLY
111
n
120
GLY
111
B
ARG
112
n
121
ARG
112
B
LYS
113
n
122
LYS
113
B
GLU
114
n
123
GLU
114
B
ILE
115
n
124
ILE
115
B
PRO
116
n
125
PRO
116
B
SER
117
n
126
SER
117
B
GLY
118
n
127
GLY
118
B
ASN
119
n
128
ASN
119
B
ARG
120
n
129
ARG
120
B
THR
121
n
130
THR
121
B
LYS
122
n
131
LYS
122
B
ARG
123
n
132
ARG
123
B
ILE
124
n
133
ILE
124
B
LEU
125
n
134
LEU
125
B
ILE
126
n
135
ILE
126
B
ASN
127
n
136
ASN
127
B
VAL
128
n
137
VAL
128
B
PRO
129
n
138
PRO
129
B
GLY
130
n
139
GLY
130
B
ILE
131
n
140
ILE
131
B
TYR
132
n
141
TYR
132
B
SER
133
n
142
SER
133
B
ASP
134
n
143
ASP
134
B
SER
135
n
144
SER
135
B
PHE
136
n
145
PHE
136
B
TRP
137
n
146
TRP
137
B
ALA
138
n
147
ALA
138
B
SER
139
n
148
SER
139
B
ILE
140
n
149
ILE
140
B
ILE
141
n
150
ILE
141
B
ARG
142
n
151
ARG
142
B
GLY
143
n
152
GLY
143
B
DT
1
n
1
DT
1
C
DC
2
n
2
DC
2
C
DA
3
n
3
DA
3
C
DT
4
n
4
DT
4
C
5HC
5
n
5
5HC
5
C
DG
6
n
6
DG
6
C
DA
7
n
7
DA
7
C
DT
8
n
8
DT
8
C
DT
9
n
9
DT
9
C
DC
10
n
10
DC
10
C
DG
1
n
1
DG
1
D
DA
2
n
2
DA
2
D
DA
3
n
3
DA
3
D
DT
4
n
4
DT
4
D
5HC
5
n
5
5HC
5
D
DG
6
n
6
DG
6
D
DA
7
n
7
DA
7
D
DT
8
n
8
DT
8
D
DG
9
n
9
DG
9
D
DA
10
n
10
DA
10
D
DT
1
n
1
DT
1
E
DC
2
n
2
DC
2
E
DA
3
n
3
DA
3
E
DT
4
n
4
DT
4
E
5HC
5
n
5
5HC
5
E
DG
6
n
6
DG
6
E
DA
7
n
7
DA
7
E
DT
8
n
8
DT
8
E
DT
9
n
9
DT
9
E
DC
10
n
10
DC
10
E
DG
1
n
1
DG
1
F
DA
2
n
2
DA
2
F
DA
3
n
3
DA
3
F
DT
4
n
4
DT
4
F
5HC
5
n
5
5HC
5
F
DG
6
n
6
DG
6
F
DA
7
n
7
DA
7
F
DT
8
n
8
DT
8
F
DG
9
n
9
DG
9
F
DA
10
n
10
DA
10
F
1.5009
0.7803
1.0197
2.3651
0.1926
0.7662
0.0957
0.2000
-0.2733
0.3041
0.1513
-0.0972
0.0454
0.1016
-0.2470
0.0509
0.0410
-0.0347
0.0758
-0.0266
0.1086
refined
-16.5228
29.2994
-6.4928
X-RAY DIFFRACTION
1.4861
0.9116
-0.4008
1.5722
-0.4792
1.2067
0.2769
0.0833
0.0178
0.3407
-0.1465
-0.0809
-0.0039
0.0147
-0.1304
0.1304
0.0036
-0.0531
0.0531
0.0051
0.0461
refined
5.1498
51.7371
5.8043
X-RAY DIFFRACTION
A
-5
A
145
X-RAY DIFFRACTION
1
C
1
C
10
X-RAY DIFFRACTION
1
D
1
D
10
X-RAY DIFFRACTION
1
B
-5
B
145
X-RAY DIFFRACTION
2
E
1
E
10
X-RAY DIFFRACTION
2
F
1
F
10
X-RAY DIFFRACTION
2
author_and_software_defined_assembly
PISA
3
trimeric
author_and_software_defined_assembly
PISA
3
trimeric
SAXS
2900
-18
9580
2870
-20
9590
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
VAL
3
A
N
VAL
12
A
O
LEU
11
A
O
LEU
20
A
N
SER
16
A
N
SER
25
A
O
ILE
27
A
O
ILE
36
A
N
LEU
26
A
N
LEU
35
A
O
ILE
126
A
O
ILE
135
A
O
ASN
127
A
O
ASN
136
A
N
VAL
60
A
N
VAL
69
A
N
VAL
59
A
N
VAL
68
A
O
PHE
86
A
O
PHE
95
B
N
VAL
3
B
N
VAL
12
B
O
LEU
11
B
O
LEU
20
B
N
SER
16
B
N
SER
25
B
O
ILE
27
B
O
ILE
36
B
N
LEU
26
B
N
LEU
35
B
O
ILE
126
B
O
ILE
135
B
O
ASN
127
B
O
ASN
136
B
N
VAL
60
B
N
VAL
69
B
N
VAL
59
B
N
VAL
68
B
O
PHE
86
B
O
PHE
95
1
B
HOH
323
H
HOH
1
A
GLY
-8
A
GLY
1
1
Y
1
A
HIS
-7
A
HIS
2
1
Y
1
A
HIS
-6
A
HIS
3
1
Y
1
A
HIS
-5
A
HIS
4
1
Y
1
A
HIS
-4
A
HIS
5
1
Y
1
A
HIS
-3
A
HIS
6
1
Y
1
A
HIS
-2
A
HIS
7
1
Y
1
B
GLY
-8
B
GLY
1
1
Y
1
B
HIS
-7
B
HIS
2
1
Y
1
B
HIS
-6
B
HIS
3
1
Y
1
B
HIS
-5
B
HIS
4
1
Y
1
B
HIS
-4
B
HIS
5
1
Y
1
B
HIS
-3
B
HIS
6
1
Y
1
B
HIS
-2
B
HIS
7
1
Y
1
A
ALA
13
-155.87
88.10
1
B
SER
108
-102.54
-169.19
158.210
53.522
35.080
-0.3100
-0.1600
-0.0000
-0.3100
0.0000
1.0100
0.9740
0.9580
HYDROGEN ATOMS HAVE BEEN ADDED IN THE RIDING POSITIONS.
TLS REFINEMENT HAS BEEN USED.
U VALUES : WITH TLS ADDED.
THE CLUSTERS OF SOLVENT MOLECULES BETWEEN RESIDUES 46 AND 94 AND NEXT TO RESIDUE 54 OF CHAIN B LIKELY CORRESPOND TO DISORDERED GLYCEROL MOLECULES. THE ELECTRON DENSITY IS NOT DEFINED ENOUGH TO UNAMBIGUOUSLY MODEL THEM.
0.2034
0.1570
0.1592
2.21
33.54
1534
28708
5.1
99.21
8.998
0.117
RANDOM
1
THROUGHOUT
0.000
MOLECULAR REPLACEMENT
0.18
0.163
0.8
0.8
1.2
6GHC
2.21
33.54
405
3541
62.95
0
816
2320
330
0.005
0.013
3399
0.001
0.018
2758
1.210
1.548
4767
1.294
1.832
6424
6.284
5.000
312
32.341
20.759
145
12.540
15.000
446
13.773
15.000
24
0.053
0.200
431
0.005
0.020
3348
0.001
0.020
748
0.303
0.0000
0.295
2.26
97
1945
92.48
55.6
2.21
33.54
6T22
30298
1.000
0.084
0.086
1
38.15
35.8
99.2
1.761
2.21
2.34
1.91
4597
0.734
1.802
1
20.8
95.4
refinement
REFMAC
5.8.0253
data reduction
XDS
data scaling
XDS
phasing
MOLREP
model building
ARP/wARP
data extraction
PDB_EXTRACT
3.25
N
N-terminal domain of EcoKMcrA restriction endonuclease (NEco) in complex with T5hmCGA target sequence
1
N
N
1
N
N
2
N
N
3
N
N
2
N
N
3
N
N
4
N
N
4
N
N
4
N
N
4
N
N
4
N
N
4
N
N
A
ASP
39
A
ASP
48
HELX_P
A
SER
54
A
SER
63
1
AA1
16
A
SER
65
A
SER
74
HELX_P
A
MET
72
A
MET
81
1
AA2
8
A
SER
74
A
SER
83
HELX_P
A
LYS
79
A
LYS
88
1
AA3
6
A
SER
92
A
SER
101
HELX_P
A
TYR
103
A
TYR
112
1
AA4
12
A
GLN
104
A
GLN
113
HELX_P
A
PHE
107
A
PHE
116
5
AA5
4
A
SER
133
A
SER
142
HELX_P
A
GLY
143
A
GLY
152
1
AA6
11
B
ASP
39
B
ASP
48
HELX_P
B
SER
54
B
SER
63
1
AA7
16
B
SER
65
B
SER
74
HELX_P
B
MET
72
B
MET
81
1
AA8
8
B
SER
74
B
SER
83
HELX_P
B
LYS
79
B
LYS
88
1
AA9
6
B
SER
92
B
SER
101
HELX_P
B
TYR
103
B
TYR
112
1
AB1
12
B
GLN
104
B
GLN
113
HELX_P
B
PHE
107
B
PHE
116
5
AB2
4
B
SER
133
B
SER
142
HELX_P
B
GLY
143
B
GLY
152
1
AB3
11
covale
1.589
both
C
DT
4
C
O3'
DT
4
1_555
C
5HC
5
C
P
5HC
5
1_555
covale
1.595
both
C
5HC
5
C
O3'
5HC
5
1_555
C
DG
6
C
P
DG
6
1_555
covale
1.582
both
D
DT
4
D
O3'
DT
4
1_555
D
5HC
5
D
P
5HC
5
1_555
covale
1.602
both
D
5HC
5
D
O3'
5HC
5
1_555
D
DG
6
D
P
DG
6
1_555
covale
1.591
both
E
DT
4
E
O3'
DT
4
1_555
E
5HC
5
E
P
5HC
5
1_555
covale
1.600
both
E
5HC
5
E
O3'
5HC
5
1_555
E
DG
6
E
P
DG
6
1_555
covale
1.596
both
F
DT
4
F
O3'
DT
4
1_555
F
5HC
5
F
P
5HC
5
1_555
covale
1.611
both
F
5HC
5
F
O3'
5HC
5
1_555
F
DG
6
F
P
DG
6
1_555
hydrog
WATSON-CRICK
C
DT
1
C
N3
DT
1
1_555
D
DA
10
D
N1
DA
10
1_555
hydrog
WATSON-CRICK
C
DT
1
C
O4
DT
1
1_555
D
DA
10
D
N6
DA
10
1_555
hydrog
WATSON-CRICK
C
DC
2
C
N3
DC
2
1_555
D
DG
9
D
N1
DG
9
1_555
hydrog
WATSON-CRICK
C
DC
2
C
N4
DC
2
1_555
D
DG
9
D
O6
DG
9
1_555
hydrog
WATSON-CRICK
C
DC
2
C
O2
DC
2
1_555
D
DG
9
D
N2
DG
9
1_555
hydrog
WATSON-CRICK
C
DA
3
C
N1
DA
3
1_555
D
DT
8
D
N3
DT
8
1_555
hydrog
WATSON-CRICK
C
DA
3
C
N6
DA
3
1_555
D
DT
8
D
O4
DT
8
1_555
hydrog
WATSON-CRICK
C
DT
4
C
N3
DT
4
1_555
D
DA
7
D
N1
DA
7
1_555
hydrog
WATSON-CRICK
C
DT
4
C
O4
DT
4
1_555
D
DA
7
D
N6
DA
7
1_555
hydrog
WATSON-CRICK
C
5HC
5
C
N3
5HC
5
1_555
D
DG
6
D
N1
DG
6
1_555
hydrog
WATSON-CRICK
C
5HC
5
C
N4
5HC
5
1_555
D
DG
6
D
O6
DG
6
1_555
hydrog
WATSON-CRICK
C
5HC
5
C
O2
5HC
5
1_555
D
DG
6
D
N2
DG
6
1_555
hydrog
WATSON-CRICK
C
DG
6
C
N1
DG
6
1_555
D
5HC
5
D
N3
5HC
5
1_555
hydrog
WATSON-CRICK
C
DG
6
C
N2
DG
6
1_555
D
5HC
5
D
O2
5HC
5
1_555
hydrog
WATSON-CRICK
C
DG
6
C
O6
DG
6
1_555
D
5HC
5
D
N4
5HC
5
1_555
hydrog
WATSON-CRICK
C
DA
7
C
N1
DA
7
1_555
D
DT
4
D
N3
DT
4
1_555
hydrog
WATSON-CRICK
C
DA
7
C
N6
DA
7
1_555
D
DT
4
D
O4
DT
4
1_555
hydrog
WATSON-CRICK
C
DT
8
C
N3
DT
8
1_555
D
DA
3
D
N1
DA
3
1_555
hydrog
WATSON-CRICK
C
DT
8
C
O4
DT
8
1_555
D
DA
3
D
N6
DA
3
1_555
hydrog
WATSON-CRICK
C
DT
9
C
N3
DT
9
1_555
D
DA
2
D
N1
DA
2
1_555
hydrog
WATSON-CRICK
C
DT
9
C
O4
DT
9
1_555
D
DA
2
D
N6
DA
2
1_555
hydrog
WATSON-CRICK
C
DC
10
C
N3
DC
10
1_555
D
DG
1
D
N1
DG
1
1_555
hydrog
WATSON-CRICK
C
DC
10
C
N4
DC
10
1_555
D
DG
1
D
O6
DG
1
1_555
hydrog
WATSON-CRICK
C
DC
10
C
O2
DC
10
1_555
D
DG
1
D
N2
DG
1
1_555
hydrog
WATSON-CRICK
E
DT
1
E
N3
DT
1
1_555
F
DA
10
F
N1
DA
10
1_555
hydrog
WATSON-CRICK
E
DT
1
E
O4
DT
1
1_555
F
DA
10
F
N6
DA
10
1_555
hydrog
WATSON-CRICK
E
DC
2
E
N3
DC
2
1_555
F
DG
9
F
N1
DG
9
1_555
hydrog
WATSON-CRICK
E
DC
2
E
N4
DC
2
1_555
F
DG
9
F
O6
DG
9
1_555
hydrog
WATSON-CRICK
E
DC
2
E
O2
DC
2
1_555
F
DG
9
F
N2
DG
9
1_555
hydrog
WATSON-CRICK
E
DA
3
E
N1
DA
3
1_555
F
DT
8
F
N3
DT
8
1_555
hydrog
WATSON-CRICK
E
DA
3
E
N6
DA
3
1_555
F
DT
8
F
O4
DT
8
1_555
hydrog
WATSON-CRICK
E
DT
4
E
N3
DT
4
1_555
F
DA
7
F
N1
DA
7
1_555
hydrog
WATSON-CRICK
E
DT
4
E
O4
DT
4
1_555
F
DA
7
F
N6
DA
7
1_555
hydrog
WATSON-CRICK
E
5HC
5
E
N3
5HC
5
1_555
F
DG
6
F
N1
DG
6
1_555
hydrog
WATSON-CRICK
E
5HC
5
E
N4
5HC
5
1_555
F
DG
6
F
O6
DG
6
1_555
hydrog
WATSON-CRICK
E
5HC
5
E
O2
5HC
5
1_555
F
DG
6
F
N2
DG
6
1_555
hydrog
WATSON-CRICK
E
DG
6
E
N1
DG
6
1_555
F
5HC
5
F
N3
5HC
5
1_555
hydrog
WATSON-CRICK
E
DG
6
E
N2
DG
6
1_555
F
5HC
5
F
O2
5HC
5
1_555
hydrog
WATSON-CRICK
E
DG
6
E
O6
DG
6
1_555
F
5HC
5
F
N4
5HC
5
1_555
hydrog
WATSON-CRICK
E
DA
7
E
N1
DA
7
1_555
F
DT
4
F
N3
DT
4
1_555
hydrog
WATSON-CRICK
E
DA
7
E
N6
DA
7
1_555
F
DT
4
F
O4
DT
4
1_555
hydrog
WATSON-CRICK
E
DT
8
E
N3
DT
8
1_555
F
DA
3
F
N1
DA
3
1_555
hydrog
WATSON-CRICK
E
DT
8
E
O4
DT
8
1_555
F
DA
3
F
N6
DA
3
1_555
hydrog
WATSON-CRICK
E
DT
9
E
N3
DT
9
1_555
F
DA
2
F
N1
DA
2
1_555
hydrog
WATSON-CRICK
E
DT
9
E
O4
DT
9
1_555
F
DA
2
F
N6
DA
2
1_555
hydrog
WATSON-CRICK
E
DC
10
E
N3
DC
10
1_555
F
DG
1
F
N1
DG
1
1_555
hydrog
WATSON-CRICK
E
DC
10
E
N4
DC
10
1_555
F
DG
1
F
O6
DG
1
1_555
hydrog
WATSON-CRICK
E
DC
10
E
O2
DC
10
1_555
F
DG
1
F
N2
DG
1
1_555
HYDROLASE
EcoKMcrA, NEco, N-TERMINAL DOMAIN, MODIFICATION DEPENDENT RESTRICTION, 5-METHYLCYTOSINE, 5MC, 5-HYDROXYMETHYLCYTOSINE, 5HMC, HNH ENDONUCLEASE, BBA-ME NUCLEASE, HYDROLASE
A
GLY
32
A
GLY
41
1
A
PRO
33
A
PRO
42
-4.42
B
GLY
32
B
GLY
41
1
B
PRO
33
B
PRO
42
-5.53
MCRA_ECOLI
UNP
1
1
P24200
MHVFDNNGIELKAECSIGEEDGVYGLILESWGPGDRNKDYNIALDYIIERLVDSGVSQVVVYLASSSVRKHMHSLDERKI
HPGEYFTLIGNSPRDIRLKMCGYQAYFSRTGRKEIPSGNRTKRILINVPGIYSDSFWASIIRG
6T22
PDB
2
1
6T22
6T22
PDB
3
1
6T22
1
143
6T22
1
143
P24200
A
1
10
152
1
143
6T22
1
143
P24200
B
1
10
152
1
10
6T22
1
10
6T22
C
2
1
10
1
10
6T22
1
10
6T22
D
3
1
10
1
10
6T22
1
10
6T22
E
2
1
10
1
10
6T22
1
10
6T22
F
3
1
10
1
expression tag
GLY
-8
6T22
A
P24200
UNP
1
1
expression tag
HIS
-7
6T22
A
P24200
UNP
2
1
expression tag
HIS
-6
6T22
A
P24200
UNP
3
1
expression tag
HIS
-5
6T22
A
P24200
UNP
4
1
expression tag
HIS
-4
6T22
A
P24200
UNP
5
1
expression tag
HIS
-3
6T22
A
P24200
UNP
6
1
expression tag
HIS
-2
6T22
A
P24200
UNP
7
1
expression tag
GLU
-1
6T22
A
P24200
UNP
8
1
expression tag
PHE
0
6T22
A
P24200
UNP
9
2
expression tag
GLY
-8
6T22
B
P24200
UNP
1
2
expression tag
HIS
-7
6T22
B
P24200
UNP
2
2
expression tag
HIS
-6
6T22
B
P24200
UNP
3
2
expression tag
HIS
-5
6T22
B
P24200
UNP
4
2
expression tag
HIS
-4
6T22
B
P24200
UNP
5
2
expression tag
HIS
-3
6T22
B
P24200
UNP
6
2
expression tag
HIS
-2
6T22
B
P24200
UNP
7
2
expression tag
GLU
-1
6T22
B
P24200
UNP
8
2
expression tag
PHE
0
6T22
B
P24200
UNP
9
6
6
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
MET
1
A
MET
10
A
PHE
4
A
PHE
13
A
GLU
10
A
GLU
19
A
GLU
20
A
GLU
29
A
VAL
23
A
VAL
32
A
LEU
28
A
LEU
37
A
ILE
124
A
ILE
133
A
ASN
127
A
ASN
136
A
GLN
58
A
GLN
67
A
LEU
63
A
LEU
72
A
PHE
86
A
PHE
95
A
THR
87
A
THR
96
B
MET
1
B
MET
10
B
PHE
4
B
PHE
13
B
GLU
10
B
GLU
19
B
GLU
20
B
GLU
29
B
VAL
23
B
VAL
32
B
LEU
28
B
LEU
37
B
ILE
124
B
ILE
133
B
ASN
127
B
ASN
136
B
GLN
58
B
GLN
67
B
LEU
63
B
LEU
72
B
PHE
86
B
PHE
95
B
THR
87
B
THR
96
178
P 61 2 2