HEADER PROTEIN FIBRIL 15-OCT-19 6UOR TITLE MICROED STRUCTURE OF OSPYL/RCAR5 (24-29) AT 3 E-/A^2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ABSCISIC ACID RECEPTOR PYL5; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 24-29; COMPND 5 SYNONYM: PYR1-LIKE PROTEIN 11,OSPYL11,PYR1-LIKE PROTEIN 5,OSPYL5, COMPND 6 REGULATORY COMPONENTS OF ABA RECEPTOR 5; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: ORYZA SATIVA; SOURCE 4 ORGANISM_COMMON: RICE; SOURCE 5 ORGANISM_TAXID: 4530 KEYWDS PROTOFILAMENT, PROTEIN FIBRIL EXPDTA ELECTRON CRYSTALLOGRAPHY AUTHOR M.GALLAGHER-JONES,L.S.RICHARDS,S.LEE,J.A.RODRIGUEZ REVDAT 3 13-MAR-24 6UOR 1 REMARK REVDAT 2 30-JUN-21 6UOR 1 REMARK REVDAT 1 13-MAY-20 6UOR 0 JRNL AUTH M.GALLAGHER-JONES,K.C.BUSTILLO,C.OPHUS,L.S.RICHARDS, JRNL AUTH 2 J.CISTON,S.LEE,A.M.MINOR,J.A.RODRIGUEZ JRNL TITL ATOMIC STRUCTURES DETERMINED FROM DIGITALLY DEFINED JRNL TITL 2 NANOCRYSTALLINE REGIONS JRNL REF IUCRJ V. 7 490 2020 JRNL REFN ESSN 2052-2525 JRNL DOI 10.1107/S2052252520004030 REMARK 2 REMARK 2 RESOLUTION. 0.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 0.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 7.38 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.410 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 1768 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.050 REMARK 3 FREE R VALUE TEST SET COUNT : 160 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 7.3800 - 0.9000 0.97 1608 160 0.2057 0.2397 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.070 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.750 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 5.98 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 2.61 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6UOR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-OCT-19. REMARK 100 THE DEPOSITION ID IS D_1000244972. REMARK 240 REMARK 240 EXPERIMENTAL DETAILS REMARK 240 RECONSTRUCTION METHOD : CRYSTALLOGRAPHY REMARK 240 SAMPLE TYPE : 3D ARRAY REMARK 240 SPECIMEN TYPE : NULL REMARK 240 DATA ACQUISITION REMARK 240 DATE OF DATA COLLECTION : 04-APR-19 REMARK 240 TEMPERATURE (KELVIN) : 100.0 REMARK 240 PH : 7.00 REMARK 240 NUMBER OF CRYSTALS USED : NULL REMARK 240 MICROSCOPE MODEL : FEI TECNAI F30 REMARK 240 DETECTOR TYPE : TVIPS TEMCAM-F416 (4K X 4K) REMARK 240 ACCELERATION VOLTAGE (KV) : 300 REMARK 240 NUMBER OF UNIQUE REFLECTIONS : 1776 REMARK 240 RESOLUTION RANGE HIGH (A) : 0.900 REMARK 240 RESOLUTION RANGE LOW (A) : 7.380 REMARK 240 DATA SCALING SOFTWARE : XSCALE REMARK 240 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 240 DATA REDUNDANCY : 8.699 REMARK 240 IN THE HIGHEST RESOLUTION SHELL REMARK 240 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) :0.90 REMARK 240 HIGHEST RESOLUTION SHELL, RANGE LOW (A) :1.00 REMARK 240 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 240 DATA REDUNDANCY IN SHELL : 9.29 REMARK 240 R MERGE FOR SHELL (I) : 0.40500 REMARK 240 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 240 SOFTWARE USED : NULL REMARK 240 STARTING MODEL : NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 2.36500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 19.46500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 5.66000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 19.46500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 2.36500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 5.66000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 760 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 DBREF 6UOR A 24 29 UNP Q6I5C3 PYL5_ORYSJ 24 29 SEQRES 1 A 6 ALA VAL ALA ALA GLY ALA CRYST1 4.730 11.320 38.930 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.211416 0.000000 0.000000 0.00000 SCALE2 0.000000 0.088339 0.000000 0.00000 SCALE3 0.000000 0.000000 0.025687 0.00000 ATOM 1 N ALA A 24 3.851 8.496 17.817 1.00 2.72 N ANISOU 1 N ALA A 24 467 397 170 -9 27 -85 N ATOM 2 CA ALA A 24 3.395 9.053 16.518 1.00 1.73 C ANISOU 2 CA ALA A 24 163 323 170 74 9 -93 C ATOM 3 C ALA A 24 4.030 8.255 15.422 1.00 1.37 C ANISOU 3 C ALA A 24 106 254 160 41 -3 -98 C ATOM 4 O ALA A 24 5.241 8.081 15.385 1.00 2.02 O ANISOU 4 O ALA A 24 173 387 208 73 -33 -148 O ATOM 5 CB ALA A 24 3.798 10.461 16.384 1.00 2.73 C ANISOU 5 CB ALA A 24 654 194 190 84 46 -6 C ATOM 6 H1 ALA A 24 4.733 8.381 17.797 1.00 3.33 H ATOM 7 H2 ALA A 24 3.640 9.060 18.472 1.00 3.33 H ATOM 8 H3 ALA A 24 3.453 7.713 17.960 1.00 3.33 H ATOM 9 HA ALA A 24 2.427 9.015 16.461 1.00 2.14 H ATOM 10 HB1 ALA A 24 3.489 10.797 15.528 1.00 3.34 H ATOM 11 HB2 ALA A 24 3.398 10.974 17.104 1.00 3.34 H ATOM 12 HB3 ALA A 24 4.765 10.519 16.433 1.00 3.34 H ATOM 13 N VAL A 25 3.212 7.796 14.504 1.00 0.99 N ANISOU 13 N VAL A 25 70 168 139 26 4 -66 N ATOM 14 CA VAL A 25 3.683 6.983 13.412 1.00 0.79 C ANISOU 14 CA VAL A 25 54 127 120 -4 21 -55 C ATOM 15 C VAL A 25 3.035 7.523 12.175 1.00 0.90 C ANISOU 15 C VAL A 25 138 147 56 -69 3 -1 C ATOM 16 O VAL A 25 1.811 7.661 12.122 1.00 1.06 O ANISOU 16 O VAL A 25 76 259 69 32 -3 2 O ATOM 17 CB VAL A 25 3.291 5.515 13.608 1.00 2.19 C ANISOU 17 CB VAL A 25 468 167 198 53 70 -36 C ATOM 18 CG1 VAL A 25 3.811 4.684 12.457 1.00 3.45 C ANISOU 18 CG1 VAL A 25 811 260 240 154 102 22 C ATOM 19 CG2 VAL A 25 3.829 5.028 14.897 1.00 4.13 C ANISOU 19 CG2 VAL A 25 1024 270 276 62 88 1 C ATOM 20 H VAL A 25 2.365 7.945 14.492 1.00 1.26 H ATOM 21 HA VAL A 25 4.649 7.037 13.333 1.00 1.02 H ATOM 22 HB VAL A 25 2.325 5.428 13.626 1.00 2.70 H ATOM 23 HG11 VAL A 25 3.589 3.753 12.613 1.00 4.21 H ATOM 24 HG12 VAL A 25 3.397 4.990 11.635 1.00 4.21 H ATOM 25 HG13 VAL A 25 4.774 4.790 12.401 1.00 4.21 H ATOM 26 HG21 VAL A 25 3.738 4.063 14.933 1.00 5.02 H ATOM 27 HG22 VAL A 25 4.765 5.275 14.963 1.00 5.02 H ATOM 28 HG23 VAL A 25 3.328 5.435 15.622 1.00 5.02 H ATOM 29 N ALA A 26 3.842 7.823 11.187 1.00 1.11 N ANISOU 29 N ALA A 26 87 241 93 -29 22 18 N ATOM 30 CA ALA A 26 3.325 8.312 9.932 1.00 1.06 C ANISOU 30 CA ALA A 26 63 281 60 -1 -8 5 C ATOM 31 C ALA A 26 4.005 7.558 8.819 1.00 0.90 C ANISOU 31 C ALA A 26 95 193 53 -39 -2 -7 C ATOM 32 O ALA A 26 5.222 7.368 8.836 1.00 0.85 O ANISOU 32 O ALA A 26 38 225 59 7 8 -30 O ATOM 33 CB ALA A 26 3.568 9.804 9.783 1.00 1.75 C ANISOU 33 CB ALA A 26 294 294 76 -1 -15 -16 C ATOM 34 H ALA A 26 4.698 7.751 11.218 1.00 1.39 H ATOM 35 HA ALA A 26 2.369 8.156 9.880 1.00 1.34 H ATOM 36 HB1 ALA A 26 3.218 10.097 8.928 1.00 2.16 H ATOM 37 HB2 ALA A 26 3.116 10.271 10.503 1.00 2.16 H ATOM 38 HB3 ALA A 26 4.522 9.974 9.826 1.00 2.16 H ATOM 39 N ALA A 27 3.224 7.126 7.862 1.00 0.54 N ANISOU 39 N ALA A 27 51 98 57 -2 -29 -2 N ATOM 40 CA ALA A 27 3.790 6.473 6.710 1.00 0.72 C ANISOU 40 CA ALA A 27 75 141 56 -8 -24 -18 C ATOM 41 C ALA A 27 3.087 7.006 5.492 1.00 1.13 C ANISOU 41 C ALA A 27 245 110 76 60 -1 14 C ATOM 42 O ALA A 27 1.863 7.132 5.474 1.00 0.89 O ANISOU 42 O ALA A 27 73 183 83 41 -24 -25 O ATOM 43 CB ALA A 27 3.592 4.967 6.770 1.00 1.31 C ANISOU 43 CB ALA A 27 203 222 71 -4 30 -14 C ATOM 44 H ALA A 27 2.367 7.197 7.857 1.00 0.71 H ATOM 45 HA ALA A 27 4.741 6.656 6.655 1.00 0.92 H ATOM 46 HB1 ALA A 27 3.968 4.567 5.970 1.00 1.63 H ATOM 47 HB2 ALA A 27 4.043 4.620 7.556 1.00 1.63 H ATOM 48 HB3 ALA A 27 2.643 4.775 6.822 1.00 1.63 H ATOM 49 N GLY A 28 3.866 7.294 4.475 1.00 1.27 N ANISOU 49 N GLY A 28 94 276 114 3 14 75 N ATOM 50 CA GLY A 28 3.284 7.571 3.195 1.00 2.00 C ANISOU 50 CA GLY A 28 198 387 172 5 47 107 C ATOM 51 C GLY A 28 4.053 8.663 2.516 1.00 2.04 C ANISOU 51 C GLY A 28 161 413 202 -3 32 130 C ATOM 52 O GLY A 28 5.280 8.640 2.492 1.00 3.22 O ANISOU 52 O GLY A 28 465 534 225 -32 20 163 O ATOM 53 H GLY A 28 4.724 7.334 4.504 1.00 1.59 H ATOM 54 HA2 GLY A 28 3.308 6.775 2.642 1.00 2.46 H ATOM 55 HA3 GLY A 28 2.363 7.853 3.305 1.00 2.46 H ATOM 56 N ALA A 29 3.360 9.634 1.971 1.00 2.67 N ANISOU 56 N ALA A 29 243 552 222 26 46 147 N ATOM 57 CA ALA A 29 4.070 10.683 1.290 1.00 4.12 C ANISOU 57 CA ALA A 29 719 587 260 164 58 132 C ATOM 58 C ALA A 29 3.204 11.911 1.161 1.00 5.21 C ANISOU 58 C ALA A 29 969 720 292 164 113 76 C ATOM 59 O ALA A 29 3.623 12.920 0.598 1.00 6.34 O ANISOU 59 O ALA A 29 1268 790 352 -108 74 92 O ATOM 60 CB ALA A 29 4.529 10.199 -0.065 1.00 4.38 C ANISOU 60 CB ALA A 29 802 589 274 47 111 133 C ATOM 61 OXT ALA A 29 2.073 11.916 1.639 1.00 5.53 O ANISOU 61 OXT ALA A 29 1004 790 306 16 142 71 O ATOM 62 H ALA A 29 2.503 9.705 1.981 1.00 3.27 H ATOM 63 HA ALA A 29 4.859 10.928 1.800 1.00 5.01 H ATOM 64 HB1 ALA A 29 4.955 10.933 -0.535 1.00 5.32 H ATOM 65 HB2 ALA A 29 5.161 9.473 0.056 1.00 5.32 H ATOM 66 HB3 ALA A 29 3.759 9.888 -0.566 1.00 5.32 H TER 67 ALA A 29 MASTER 164 0 0 0 0 0 0 6 32 1 0 1 END