data_6DL1 # _entry.id 6DL1 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.321 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 6DL1 WWPDB D_1000234837 # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6DL1 _pdbx_database_status.recvd_initial_deposition_date 2018-05-31 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Wang, C.K.' 1 ? 'King, G.J.' 2 ? 'Ramalho, S.D.' 3 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'J. Nat. Prod.' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1520-6025 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 81 _citation.language ? _citation.page_first 2436 _citation.page_last 2445 _citation.title 'Synthesis, Racemic X-ray Crystallographic, and Permeability Studies of Bioactive Orbitides from Jatropha Species.' _citation.year 2018 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1021/acs.jnatprod.8b00447 _citation.pdbx_database_id_PubMed 30345754 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Ramalho, S.D.' 1 0000-0001-5314-4487 primary 'Wang, C.K.' 2 0000-0002-7973-7632 primary 'King, G.J.' 3 ? primary 'Byriel, K.A.' 4 ? primary 'Huang, Y.H.' 5 0000-0001-6937-2660 primary 'Bolzani, V.S.' 6 0000-0001-7019-5825 primary 'Craik, D.J.' 7 0000-0003-0007-6796 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 94.75 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 6DL1 _cell.details ? _cell.formula_units_Z ? _cell.length_a 20.495 _cell.length_a_esd ? _cell.length_b 9.558 _cell.length_b_esd ? _cell.length_c 30.021 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 4 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6DL1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 14 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21/n 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn jatrophidin 869.020 1 ? ? ? ? 2 water nat water 18.015 8 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code PGLLNLWG _entity_poly.pdbx_seq_one_letter_code_can PGLLNLWG _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 PRO n 1 2 GLY n 1 3 LEU n 1 4 LEU n 1 5 ASN n 1 6 LEU n 1 7 TRP n 1 8 GLY n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 8 _pdbx_entity_src_syn.organism_scientific 'Jatropha curcas' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 180498 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 6DL1 _struct_ref.pdbx_db_accession 6DL1 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 6DL1 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 8 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 6DL1 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 8 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 8 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6DL1 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.1 M Tris base (pH 8.0), 1 M LiCl, and 20% w/v polyethylene glycol 6000' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2017-08-26 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9537 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'AUSTRALIAN SYNCHROTRON BEAMLINE MX2' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.9537 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline MX2 _diffrn_source.pdbx_synchrotron_site 'Australian Synchrotron' # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 6DL1 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.029 _reflns.d_resolution_low 29.92 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 6044 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.4 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 6.1 _reflns.pdbx_Rmerge_I_obs 0.065 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 13.5 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 1.029 _reflns_shell.d_res_low 1.05 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all ? _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.121 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6DL1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.029 _refine.ls_d_res_low 17.559 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 5592 _refine.ls_number_reflns_R_free 554 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.38 _refine.ls_percent_reflns_R_free 9.91 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1937 _refine.ls_R_factor_R_free 0.2111 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1919 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.44 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct ? _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 13.62 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.02 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 61 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 8 _refine_hist.number_atoms_total 69 _refine_hist.d_res_high 1.029 _refine_hist.d_res_low 17.559 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.005 ? 63 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 0.901 ? 85 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 4.314 ? 20 ? f_dihedral_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.053 ? 9 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.006 ? 9 ? f_plane_restr ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 1.0292 1.1327 . . 135 1239 98.00 . . . 0.1833 . 0.1659 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.1327 1.2966 . . 138 1266 100.00 . . . 0.1704 . 0.1667 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.2966 1.6334 . . 147 1265 100.00 . . . 0.2292 . 0.1843 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.6334 17.5612 . . 134 1268 100.00 . . . 0.2351 . 0.2194 . . . . . . . . . . # _struct.entry_id 6DL1 _struct.title 'Racemic structure of jatrophidin, an orbitide from Jatropha curcas' _struct.pdbx_descriptor 'DPR-GLY-DLE-DLE-DSG-DLE-DTR-GLY, PRO-GLY-LEU-LEU-ASN-LEU-TRP-GLY' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6DL1 _struct_keywords.text 'cyclic peptide, PLANT PROTEIN' _struct_keywords.pdbx_keywords 'PLANT PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_conn.id covale1 _struct_conn.conn_type_id covale _struct_conn.pdbx_leaving_atom_flag both _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id PRO _struct_conn.ptnr1_label_seq_id 1 _struct_conn.ptnr1_label_atom_id N _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_comp_id GLY _struct_conn.ptnr2_label_seq_id 8 _struct_conn.ptnr2_label_atom_id C _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id PRO _struct_conn.ptnr1_auth_seq_id 1 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id GLY _struct_conn.ptnr2_auth_seq_id 8 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 1.332 _struct_conn.pdbx_value_order sing # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _atom_sites.entry_id 6DL1 _atom_sites.fract_transf_matrix[1][1] 0.048792 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.004051 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.104624 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.033425 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_alt_id _atom_site.label_comp_id _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.label_seq_id _atom_site.pdbx_PDB_ins_code _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_seq_id _atom_site.auth_comp_id _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.pdbx_PDB_model_num ATOM 1 N N . PRO A 1 1 ? -22.805 3.983 32.361 1.00 5.12 ? 1 PRO A N 1 ATOM 2 C CA . PRO A 1 1 ? -22.872 5.334 32.926 1.00 5.24 ? 1 PRO A CA 1 ATOM 3 C C . PRO A 1 1 ? -21.751 5.627 33.932 1.00 5.08 ? 1 PRO A C 1 ATOM 4 O O . PRO A 1 1 ? -21.422 6.795 34.154 1.00 5.55 ? 1 PRO A O 1 ATOM 5 C CB . PRO A 1 1 ? -24.247 5.356 33.604 1.00 5.75 ? 1 PRO A CB 1 ATOM 6 C CG . PRO A 1 1 ? -24.529 3.921 33.924 1.00 5.99 ? 1 PRO A CG 1 ATOM 7 C CD . PRO A 1 1 ? -23.954 3.153 32.761 1.00 5.44 ? 1 PRO A CD 1 ATOM 8 H HA . PRO A 1 1 ? -22.852 5.997 32.219 1.00 6.28 ? 1 PRO A HA 1 ATOM 9 H HB2 . PRO A 1 1 ? -24.206 5.888 34.414 1.00 6.90 ? 1 PRO A HB2 1 ATOM 10 H HB3 . PRO A 1 1 ? -24.910 5.709 32.991 1.00 6.90 ? 1 PRO A HB3 1 ATOM 11 H HG2 . PRO A 1 1 ? -24.086 3.676 34.751 1.00 7.19 ? 1 PRO A HG2 1 ATOM 12 H HG3 . PRO A 1 1 ? -25.486 3.781 33.990 1.00 7.19 ? 1 PRO A HG3 1 ATOM 13 H HD2 . PRO A 1 1 ? -23.656 2.275 33.047 1.00 6.53 ? 1 PRO A HD2 1 ATOM 14 H HD3 . PRO A 1 1 ? -24.599 3.096 32.039 1.00 6.53 ? 1 PRO A HD3 1 ATOM 15 N N . GLY A 1 2 ? -21.163 4.592 34.527 1.00 4.95 ? 2 GLY A N 1 ATOM 16 C CA . GLY A 1 2 ? -20.061 4.793 35.449 1.00 4.85 ? 2 GLY A CA 1 ATOM 17 C C . GLY A 1 2 ? -18.823 5.325 34.741 1.00 4.83 ? 2 GLY A C 1 ATOM 18 O O . GLY A 1 2 ? -18.549 5.001 33.581 1.00 5.32 ? 2 GLY A O 1 ATOM 19 H H . GLY A 1 2 ? -21.385 3.769 34.412 1.00 5.94 ? 2 GLY A H 1 ATOM 20 H HA2 . GLY A 1 2 ? -20.322 5.428 36.135 1.00 5.82 ? 2 GLY A HA2 1 ATOM 21 H HA3 . GLY A 1 2 ? -19.836 3.952 35.876 1.00 5.82 ? 2 GLY A HA3 1 ATOM 22 N N . LEU A 1 3 ? -18.015 6.075 35.466 1.00 4.84 ? 3 LEU A N 1 ATOM 23 C CA . LEU A 1 3 ? -16.803 6.695 34.955 1.00 4.96 ? 3 LEU A CA 1 ATOM 24 C C . LEU A 1 3 ? -15.829 5.703 34.315 1.00 4.86 ? 3 LEU A C 1 ATOM 25 O O . LEU A 1 3 ? -15.305 5.944 33.223 1.00 5.22 ? 3 LEU A O 1 ATOM 26 C CB . LEU A 1 3 ? -16.093 7.434 36.095 1.00 4.99 ? 3 LEU A CB 1 ATOM 27 C CG . LEU A 1 3 ? -14.719 8.018 35.756 1.00 5.11 ? 3 LEU A CG 1 ATOM 28 C CD1 . LEU A 1 3 ? -14.823 9.109 34.690 1.00 5.42 ? 3 LEU A CD1 1 ATOM 29 C CD2 . LEU A 1 3 ? -14.060 8.555 37.013 1.00 5.55 ? 3 LEU A CD2 1 ATOM 30 H HA . LEU A 1 3 ? -17.046 7.350 34.281 1.00 5.96 ? 3 LEU A HA 1 ATOM 31 H HB2 . LEU A 1 3 ? -16.658 8.169 36.381 1.00 5.99 ? 3 LEU A HB2 1 ATOM 32 H HB3 . LEU A 1 3 ? -15.972 6.815 36.831 1.00 5.99 ? 3 LEU A HB3 1 ATOM 33 H HG . LEU A 1 3 ? -14.156 7.311 35.404 1.00 6.13 ? 3 LEU A HG 1 ATOM 34 H HD11 . LEU A 1 3 ? -13.936 9.453 34.503 1.00 6.51 ? 3 LEU A HD11 1 ATOM 35 H HD12 . LEU A 1 3 ? -15.207 8.727 33.885 1.00 6.51 ? 3 LEU A HD12 1 ATOM 36 H HD13 . LEU A 1 3 ? -15.392 9.821 35.022 1.00 6.51 ? 3 LEU A HD13 1 ATOM 37 H HD21 . LEU A 1 3 ? -13.192 8.921 36.782 1.00 6.65 ? 3 LEU A HD21 1 ATOM 38 H HD22 . LEU A 1 3 ? -14.621 9.249 37.392 1.00 6.65 ? 3 LEU A HD22 1 ATOM 39 H HD23 . LEU A 1 3 ? -13.955 7.829 37.648 1.00 6.65 ? 3 LEU A HD23 1 ATOM 40 N N . LEU A 1 4 ? -15.528 4.610 35.011 1.00 4.83 ? 4 LEU A N 1 ATOM 41 C CA . LEU A 1 4 ? -14.466 3.716 34.567 1.00 4.88 ? 4 LEU A CA 1 ATOM 42 C C . LEU A 1 4 ? -14.907 2.760 33.457 1.00 4.90 ? 4 LEU A C 1 ATOM 43 O O . LEU A 1 4 ? -14.057 2.184 32.770 1.00 5.19 ? 4 LEU A O 1 ATOM 44 C CB . LEU A 1 4 ? -13.904 2.916 35.749 1.00 5.07 ? 4 LEU A CB 1 ATOM 45 C CG . LEU A 1 4 ? -13.302 3.751 36.890 1.00 5.50 ? 4 LEU A CG 1 ATOM 46 C CD1 . LEU A 1 4 ? -12.831 2.840 38.010 1.00 5.85 ? 4 LEU A CD1 1 ATOM 47 C CD2 . LEU A 1 4 ? -12.160 4.643 36.401 1.00 6.01 ? 4 LEU A CD2 1 ATOM 48 H H . LEU A 1 4 ? -15.920 4.366 35.736 1.00 5.80 ? 4 LEU A H 1 ATOM 49 H HA . LEU A 1 4 ? -13.743 4.256 34.212 1.00 5.85 ? 4 LEU A HA 1 ATOM 50 H HB2 . LEU A 1 4 ? -14.621 2.383 36.127 1.00 6.08 ? 4 LEU A HB2 1 ATOM 51 H HB3 . LEU A 1 4 ? -13.205 2.330 35.418 1.00 6.08 ? 4 LEU A HB3 1 ATOM 52 H HG . LEU A 1 4 ? -13.993 4.329 37.251 1.00 6.59 ? 4 LEU A HG 1 ATOM 53 H HD11 . LEU A 1 4 ? -12.455 3.382 38.721 1.00 7.02 ? 4 LEU A HD11 1 ATOM 54 H HD12 . LEU A 1 4 ? -13.588 2.334 38.345 1.00 7.02 ? 4 LEU A HD12 1 ATOM 55 H HD13 . LEU A 1 4 ? -12.157 2.235 37.662 1.00 7.02 ? 4 LEU A HD13 1 ATOM 56 H HD21 . LEU A 1 4 ? -11.812 5.150 37.151 1.00 7.21 ? 4 LEU A HD21 1 ATOM 57 H HD22 . LEU A 1 4 ? -11.462 4.084 36.026 1.00 7.21 ? 4 LEU A HD22 1 ATOM 58 H HD23 . LEU A 1 4 ? -12.500 5.247 35.722 1.00 7.21 ? 4 LEU A HD23 1 ATOM 59 N N . ASN A 1 5 ? -16.220 2.589 33.305 1.00 4.97 ? 5 ASN A N 1 ATOM 60 C CA . ASN A 1 5 ? -16.808 1.652 32.361 1.00 5.04 ? 5 ASN A CA 1 ATOM 61 C C . ASN A 1 5 ? -17.140 2.390 31.066 1.00 5.11 ? 5 ASN A C 1 ATOM 62 O O . ASN A 1 5 ? -18.086 3.180 31.025 1.00 5.45 ? 5 ASN A O 1 ATOM 63 C CB . ASN A 1 5 ? -18.071 1.069 33.008 1.00 5.41 ? 5 ASN A CB 1 ATOM 64 C CG . ASN A 1 5 ? -18.696 -0.044 32.193 1.00 5.73 ? 5 ASN A CG 1 ATOM 65 O OD1 . ASN A 1 5 ? -18.525 -0.119 30.976 1.00 6.35 ? 5 ASN A OD1 1 ATOM 66 N ND2 . ASN A 1 5 ? -19.458 -0.900 32.862 1.00 6.16 ? 5 ASN A ND2 1 ATOM 67 H H . ASN A 1 5 ? -16.808 3.025 33.757 1.00 5.96 ? 5 ASN A H 1 ATOM 68 H HA . ASN A 1 5 ? -16.186 0.934 32.169 1.00 6.05 ? 5 ASN A HA 1 ATOM 69 H HB2 . ASN A 1 5 ? -17.841 0.709 33.878 1.00 6.49 ? 5 ASN A HB2 1 ATOM 70 H HB3 . ASN A 1 5 ? -18.730 1.774 33.105 1.00 6.49 ? 5 ASN A HB3 1 ATOM 71 H HD21 . ASN A 1 5 ? -19.837 -1.552 32.449 1.00 7.39 ? 5 ASN A HD21 1 ATOM 72 H HD22 . ASN A 1 5 ? -19.571 -0.803 33.709 1.00 7.39 ? 5 ASN A HD22 1 ATOM 73 N N . LEU A 1 6 ? -16.370 2.148 30.010 1.00 5.11 ? 6 LEU A N 1 ATOM 74 C CA . LEU A 1 6 ? -16.592 2.843 28.746 1.00 5.23 ? 6 LEU A CA 1 ATOM 75 C C . LEU A 1 6 ? -17.961 2.567 28.140 1.00 5.24 ? 6 LEU A C 1 ATOM 76 O O . LEU A 1 6 ? -18.414 3.329 27.284 1.00 5.64 ? 6 LEU A O 1 ATOM 77 C CB . LEU A 1 6 ? -15.526 2.449 27.727 1.00 5.61 ? 6 LEU A CB 1 ATOM 78 C CG . LEU A 1 6 ? -14.089 2.854 28.035 1.00 6.39 ? 6 LEU A CG 1 ATOM 79 C CD1 . LEU A 1 6 ? -13.162 2.222 27.001 1.00 6.91 ? 6 LEU A CD1 1 ATOM 80 C CD2 . LEU A 1 6 ? -13.919 4.366 28.048 1.00 7.03 ? 6 LEU A CD2 1 ATOM 81 H H . LEU A 1 6 ? -15.716 1.589 29.998 1.00 6.14 ? 6 LEU A H 1 ATOM 82 H HA . LEU A 1 6 ? -16.521 3.799 28.898 1.00 6.27 ? 6 LEU A HA 1 ATOM 83 H HB2 . LEU A 1 6 ? -15.537 1.483 27.637 1.00 6.73 ? 6 LEU A HB2 1 ATOM 84 H HB3 . LEU A 1 6 ? -15.759 2.851 26.875 1.00 6.73 ? 6 LEU A HB3 1 ATOM 85 H HG . LEU A 1 6 ? -13.843 2.515 28.910 1.00 7.67 ? 6 LEU A HG 1 ATOM 86 H HD11 . LEU A 1 6 ? -12.248 2.480 27.198 1.00 8.29 ? 6 LEU A HD11 1 ATOM 87 H HD12 . LEU A 1 6 ? -13.251 1.257 27.047 1.00 8.29 ? 6 LEU A HD12 1 ATOM 88 H HD13 . LEU A 1 6 ? -13.413 2.536 26.119 1.00 8.29 ? 6 LEU A HD13 1 ATOM 89 H HD21 . LEU A 1 6 ? -12.994 4.577 28.248 1.00 8.43 ? 6 LEU A HD21 1 ATOM 90 H HD22 . LEU A 1 6 ? -14.159 4.717 27.176 1.00 8.43 ? 6 LEU A HD22 1 ATOM 91 H HD23 . LEU A 1 6 ? -14.499 4.743 28.728 1.00 8.43 ? 6 LEU A HD23 1 ATOM 92 N N . TRP A 1 7 ? -18.606 1.478 28.554 1.00 5.12 ? 7 TRP A N 1 ATOM 93 C CA . TRP A 1 7 ? -19.879 1.074 27.972 1.00 5.27 ? 7 TRP A CA 1 ATOM 94 C C . TRP A 1 7 ? -21.059 1.326 28.914 1.00 5.57 ? 7 TRP A C 1 ATOM 95 O O . TRP A 1 7 ? -22.189 0.951 28.601 1.00 6.36 ? 7 TRP A O 1 ATOM 96 C CB . TRP A 1 7 ? -19.819 -0.403 27.572 1.00 5.35 ? 7 TRP A CB 1 ATOM 97 C CG . TRP A 1 7 ? -18.773 -0.677 26.511 1.00 5.52 ? 7 TRP A CG 1 ATOM 98 C CD1 . TRP A 1 7 ? -18.952 -0.644 25.153 1.00 6.00 ? 7 TRP A CD1 1 ATOM 99 C CD2 . TRP A 1 7 ? -17.395 -1.009 26.724 1.00 5.36 ? 7 TRP A CD2 1 ATOM 100 N NE1 . TRP A 1 7 ? -17.775 -0.936 24.512 1.00 6.18 ? 7 TRP A NE1 1 ATOM 101 C CE2 . TRP A 1 7 ? -16.803 -1.164 25.452 1.00 5.72 ? 7 TRP A CE2 1 ATOM 102 C CE3 . TRP A 1 7 ? -16.603 -1.194 27.863 1.00 5.49 ? 7 TRP A CE3 1 ATOM 103 C CZ2 . TRP A 1 7 ? -15.465 -1.501 25.290 1.00 5.95 ? 7 TRP A CZ2 1 ATOM 104 C CZ3 . TRP A 1 7 ? -15.269 -1.528 27.698 1.00 5.85 ? 7 TRP A CZ3 1 ATOM 105 C CH2 . TRP A 1 7 ? -14.714 -1.682 26.422 1.00 5.97 ? 7 TRP A CH2 1 ATOM 106 H H . TRP A 1 7 ? -18.323 0.955 29.175 1.00 6.15 ? 7 TRP A H 1 ATOM 107 H HA . TRP A 1 7 ? -20.030 1.592 27.166 1.00 6.32 ? 7 TRP A HA 1 ATOM 108 H HB2 . TRP A 1 7 ? -19.600 -0.935 28.353 1.00 6.42 ? 7 TRP A HB2 1 ATOM 109 H HB3 . TRP A 1 7 ? -20.682 -0.671 27.219 1.00 6.42 ? 7 TRP A HB3 1 ATOM 110 H HD1 . TRP A 1 7 ? -19.755 -0.446 24.727 1.00 7.20 ? 7 TRP A HD1 1 ATOM 111 H HE1 . TRP A 1 7 ? -17.665 -0.972 23.660 1.00 7.42 ? 7 TRP A HE1 1 ATOM 112 H HE3 . TRP A 1 7 ? -16.967 -1.099 28.713 1.00 6.59 ? 7 TRP A HE3 1 ATOM 113 H HZ2 . TRP A 1 7 ? -15.092 -1.601 24.443 1.00 7.15 ? 7 TRP A HZ2 1 ATOM 114 H HZ3 . TRP A 1 7 ? -14.734 -1.653 28.448 1.00 7.02 ? 7 TRP A HZ3 1 ATOM 115 H HH2 . TRP A 1 7 ? -13.814 -1.901 26.341 1.00 7.16 ? 7 TRP A HH2 1 ATOM 116 N N . GLY A 1 8 ? -20.798 1.965 30.053 1.00 5.55 ? 8 GLY A N 1 ATOM 117 C CA . GLY A 1 8 ? -21.826 2.207 31.048 1.00 5.46 ? 8 GLY A CA 1 ATOM 118 C C . GLY A 1 8 ? -21.795 3.624 31.571 1.00 5.25 ? 8 GLY A C 1 ATOM 119 O O . GLY A 1 8 ? -20.878 4.391 31.287 1.00 5.62 ? 8 GLY A O 1 ATOM 120 H H . GLY A 1 8 ? -20.023 2.270 30.270 1.00 6.66 ? 8 GLY A H 1 ATOM 121 H HA2 . GLY A 1 8 ? -22.699 2.042 30.658 1.00 6.56 ? 8 GLY A HA2 1 ATOM 122 H HA3 . GLY A 1 8 ? -21.703 1.600 31.795 1.00 6.56 ? 8 GLY A HA3 1 HETATM 123 O O . HOH B 2 . ? -18.716 5.920 27.952 1.00 7.12 ? 101 HOH A O 1 HETATM 124 O O . HOH B 2 . ? -15.877 7.802 31.305 1.00 8.51 ? 102 HOH A O 1 HETATM 125 O O . HOH B 2 . ? -22.950 9.141 33.806 1.00 6.43 ? 103 HOH A O 1 HETATM 126 O O . HOH B 2 . ? -14.021 0.320 30.598 1.00 5.99 ? 104 HOH A O 1 HETATM 127 O O . HOH B 2 . ? -21.425 1.718 34.608 1.00 6.64 ? 105 HOH A O 1 HETATM 128 O O . HOH B 2 . ? -18.465 -3.222 30.666 1.00 6.89 ? 106 HOH A O 1 HETATM 129 O O . HOH B 2 . ? -19.441 0.002 35.864 1.00 6.27 ? 107 HOH A O 1 HETATM 130 O O . HOH B 2 . ? -19.395 7.273 38.176 1.00 1.00 ? 108 HOH A O 1 # loop_ _atom_site_anisotrop.id _atom_site_anisotrop.type_symbol _atom_site_anisotrop.pdbx_label_atom_id _atom_site_anisotrop.pdbx_label_alt_id _atom_site_anisotrop.pdbx_label_comp_id _atom_site_anisotrop.pdbx_label_asym_id _atom_site_anisotrop.pdbx_label_seq_id _atom_site_anisotrop.pdbx_PDB_ins_code _atom_site_anisotrop.U[1][1] _atom_site_anisotrop.U[2][2] _atom_site_anisotrop.U[3][3] _atom_site_anisotrop.U[1][2] _atom_site_anisotrop.U[1][3] _atom_site_anisotrop.U[2][3] _atom_site_anisotrop.pdbx_auth_seq_id _atom_site_anisotrop.pdbx_auth_comp_id _atom_site_anisotrop.pdbx_auth_asym_id _atom_site_anisotrop.pdbx_auth_atom_id 1 N N . PRO A 1 ? 0.0525 0.0709 0.0711 0.0016 0.0017 -0.0030 1 PRO A N 2 C CA . PRO A 1 ? 0.0550 0.0711 0.0729 0.0028 0.0009 -0.0037 1 PRO A CA 3 C C . PRO A 1 ? 0.0553 0.0657 0.0721 -0.0017 0.0007 -0.0033 1 PRO A C 4 O O . PRO A 1 ? 0.0614 0.0727 0.0766 -0.0024 -0.0013 -0.0016 1 PRO A O 5 C CB . PRO A 1 ? 0.0564 0.0863 0.0757 0.0050 -0.0001 -0.0097 1 PRO A CB 6 C CG . PRO A 1 ? 0.0553 0.0969 0.0753 0.0016 0.0025 -0.0072 1 PRO A CG 7 C CD . PRO A 1 ? 0.0515 0.0822 0.0731 -0.0005 0.0028 -0.0042 1 PRO A CD 15 N N . GLY A 2 ? 0.0533 0.0664 0.0685 -0.0024 0.0028 -0.0042 2 GLY A N 16 C CA . GLY A 2 ? 0.0530 0.0649 0.0663 -0.0025 0.0023 -0.0040 2 GLY A CA 17 C C . GLY A 2 ? 0.0525 0.0659 0.0651 -0.0009 0.0040 -0.0007 2 GLY A C 18 O O . GLY A 2 ? 0.0549 0.0812 0.0660 -0.0049 0.0063 -0.0021 2 GLY A O 22 N N . LEU A 3 ? 0.0536 0.0633 0.0671 -0.0010 0.0058 0.0026 3 LEU A N 23 C CA . LEU A 3 ? 0.0551 0.0673 0.0661 0.0001 0.0066 0.0000 3 LEU A CA 24 C C . LEU A 3 ? 0.0550 0.0657 0.0638 -0.0011 0.0063 0.0003 3 LEU A C 25 O O . LEU A 3 ? 0.0568 0.0779 0.0638 0.0038 0.0088 0.0039 3 LEU A O 26 C CB . LEU A 3 ? 0.0562 0.0655 0.0679 0.0012 0.0058 -0.0021 3 LEU A CB 27 C CG . LEU A 3 ? 0.0573 0.0661 0.0707 0.0005 0.0048 -0.0036 3 LEU A CG 28 C CD1 . LEU A 3 ? 0.0606 0.0734 0.0720 -0.0031 0.0040 -0.0028 3 LEU A CD1 29 C CD2 . LEU A 3 ? 0.0580 0.0803 0.0724 -0.0037 0.0026 -0.0031 3 LEU A CD2 40 N N . LEU A 4 ? 0.0552 0.0650 0.0633 -0.0012 0.0063 -0.0013 4 LEU A N 41 C CA . LEU A 4 ? 0.0552 0.0651 0.0650 -0.0019 0.0047 0.0008 4 LEU A CA 42 C C . LEU A 4 ? 0.0537 0.0675 0.0651 0.0009 0.0044 0.0000 4 LEU A C 43 O O . LEU A 4 ? 0.0553 0.0747 0.0672 0.0013 0.0052 -0.0025 4 LEU A O 44 C CB . LEU A 4 ? 0.0587 0.0665 0.0673 -0.0005 0.0018 0.0008 4 LEU A CB 45 C CG . LEU A 4 ? 0.0662 0.0725 0.0701 -0.0026 -0.0022 0.0007 4 LEU A CG 46 C CD1 . LEU A 4 ? 0.0700 0.0814 0.0710 -0.0049 -0.0023 0.0003 4 LEU A CD1 47 C CD2 . LEU A 4 ? 0.0712 0.0853 0.0719 -0.0060 -0.0046 0.0023 4 LEU A CD2 59 N N . ASN A 5 ? 0.0522 0.0704 0.0661 -0.0007 0.0041 -0.0040 5 ASN A N 60 C CA . ASN A 5 ? 0.0547 0.0686 0.0683 -0.0019 0.0028 -0.0063 5 ASN A CA 61 C C . ASN A 5 ? 0.0537 0.0712 0.0694 -0.0013 0.0015 -0.0047 5 ASN A C 62 O O . ASN A 5 ? 0.0562 0.0801 0.0707 -0.0012 -0.0010 -0.0033 5 ASN A O 63 C CB . ASN A 5 ? 0.0594 0.0757 0.0705 -0.0047 0.0034 -0.0078 5 ASN A CB 64 C CG . ASN A 5 ? 0.0652 0.0775 0.0750 -0.0064 0.0043 -0.0077 5 ASN A CG 65 O OD1 . ASN A 5 ? 0.0740 0.0914 0.0760 -0.0134 0.0051 -0.0150 5 ASN A OD1 66 N ND2 . ASN A 5 ? 0.0689 0.0843 0.0809 -0.0075 0.0047 -0.0019 5 ASN A ND2 73 N N . LEU A 6 ? 0.0538 0.0715 0.0690 -0.0009 0.0029 0.0013 6 LEU A N 74 C CA . LEU A 6 ? 0.0557 0.0719 0.0710 -0.0030 0.0043 0.0053 6 LEU A CA 75 C C . LEU A 6 ? 0.0574 0.0713 0.0703 0.0007 0.0023 0.0025 6 LEU A C 76 O O . LEU A 6 ? 0.0613 0.0830 0.0701 -0.0012 0.0004 0.0030 6 LEU A O 77 C CB . LEU A 6 ? 0.0574 0.0795 0.0763 -0.0042 0.0085 0.0082 6 LEU A CB 78 C CG . LEU A 6 ? 0.0623 0.0967 0.0837 -0.0045 0.0098 0.0116 6 LEU A CG 79 C CD1 . LEU A 6 ? 0.0618 0.1144 0.0863 0.0015 0.0117 0.0119 6 LEU A CD1 80 C CD2 . LEU A 6 ? 0.0693 0.1078 0.0900 -0.0085 0.0102 0.0095 6 LEU A CD2 92 N N . TRP A 7 ? 0.0551 0.0696 0.0700 0.0024 0.0016 -0.0030 7 TRP A N 93 C CA . TRP A 7 ? 0.0548 0.0747 0.0708 0.0008 0.0007 -0.0054 7 TRP A CA 94 C C . TRP A 7 ? 0.0556 0.0843 0.0716 -0.0006 0.0016 -0.0102 7 TRP A C 95 O O . TRP A 7 ? 0.0590 0.1092 0.0736 -0.0067 0.0033 -0.0138 7 TRP A O 96 C CB . TRP A 7 ? 0.0571 0.0747 0.0714 -0.0007 -0.0001 -0.0046 7 TRP A CB 97 C CG . TRP A 7 ? 0.0625 0.0753 0.0720 0.0013 -0.0010 -0.0053 7 TRP A CG 98 C CD1 . TRP A 7 ? 0.0655 0.0893 0.0733 0.0084 -0.0021 -0.0053 7 TRP A CD1 99 C CD2 . TRP A 7 ? 0.0628 0.0687 0.0721 0.0021 0.0006 -0.0018 7 TRP A CD2 100 N NE1 . TRP A 7 ? 0.0679 0.0931 0.0739 0.0095 -0.0009 -0.0055 7 TRP A NE1 101 C CE2 . TRP A 7 ? 0.0654 0.0798 0.0723 0.0072 0.0022 -0.0028 7 TRP A CE2 102 C CE3 . TRP A 7 ? 0.0626 0.0730 0.0730 0.0023 0.0008 -0.0010 7 TRP A CE3 103 C CZ2 . TRP A 7 ? 0.0662 0.0855 0.0745 0.0064 0.0059 -0.0011 7 TRP A CZ2 104 C CZ3 . TRP A 7 ? 0.0646 0.0828 0.0750 0.0039 0.0007 -0.0008 7 TRP A CZ3 105 C CH2 . TRP A 7 ? 0.0651 0.0853 0.0764 0.0047 0.0041 0.0002 7 TRP A CH2 116 N N . GLY A 8 ? 0.0560 0.0836 0.0712 -0.0005 0.0019 -0.0139 8 GLY A N 117 C CA . GLY A 8 ? 0.0558 0.0810 0.0708 -0.0014 0.0031 -0.0088 8 GLY A CA 118 C C . GLY A 8 ? 0.0555 0.0744 0.0697 -0.0019 0.0039 -0.0043 8 GLY A C 119 O O . GLY A 8 ? 0.0600 0.0836 0.0701 -0.0030 0.0063 -0.0026 8 GLY A O # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 PRO 1 1 1 PRO PRO A . n A 1 2 GLY 2 2 2 GLY GLY A . n A 1 3 LEU 3 3 3 LEU LEU A . n A 1 4 LEU 4 4 4 LEU LEU A . n A 1 5 ASN 5 5 5 ASN ASN A . n A 1 6 LEU 6 6 6 LEU LEU A . n A 1 7 TRP 7 7 7 TRP TRP A . n A 1 8 GLY 8 8 8 GLY GLY A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 101 5 HOH HOH A . B 2 HOH 2 102 6 HOH HOH A . B 2 HOH 3 103 2 HOH HOH A . B 2 HOH 4 104 1 HOH HOH A . B 2 HOH 5 105 4 HOH HOH A . B 2 HOH 6 106 3 HOH HOH A . B 2 HOH 7 107 9 HOH HOH A . B 2 HOH 8 108 12 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 0 ? 1 MORE 0 ? 1 'SSA (A^2)' 1020 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2018-11-14 2 'Structure model' 1 1 2018-12-05 3 'Structure model' 1 2 2020-01-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 3 'Structure model' 'Author supporting evidence' 4 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 3 'Structure model' pdbx_audit_support 3 3 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' 4 3 'Structure model' '_pdbx_audit_support.funding_organization' 5 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? '(1.10_2142: ???)' 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? Aimless ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Sao Paulo Research Foundation (FAPESP)' Brazil '#2016/13148-4' 1 'Australian Research Council (ARC)' Australia FL150100146 2 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #