data_6NB9 # _entry.id 6NB9 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.360 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6NB9 pdb_00006nb9 10.2210/pdb6nb9/pdb WWPDB D_1000238486 ? ? EMDB EMD-0405 ? ? # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'Amyloid-Beta (20-34) with L-isoaspartate 23' _pdbx_database_related.db_id EMD-0405 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6NB9 _pdbx_database_status.recvd_initial_deposition_date 2018-12-06 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Sawaya, M.R.' 1 0000-0003-0874-9043 'Warmack, R.A.' 2 0000-0002-9612-0511 'Boyer, D.R.' 3 0000-0002-4487-0230 'Zee, C.T.' 4 0000-0002-6630-706X 'Richards, L.S.' 5 0000-0002-1694-1652 'Cascio, D.' 6 0000-0002-3877-6803 'Gonen, T.' 7 0000-0002-9254-4069 'Clarke, S.G.' 8 0000-0002-7303-6632 'Eisenberg, D.S.' 9 0000-0003-2432-5419 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nat Commun' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2041-1723 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 10 _citation.language ? _citation.page_first 3357 _citation.page_last 3357 _citation.title ;Structure of amyloid-beta (20-34) with Alzheimer's-associated isomerization at Asp23 reveals a distinct protofilament interface. ; _citation.year 2019 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s41467-019-11183-z _citation.pdbx_database_id_PubMed 31350392 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Warmack, R.A.' 1 0000-0002-9612-0511 primary 'Boyer, D.R.' 2 ? primary 'Zee, C.T.' 3 ? primary 'Richards, L.S.' 4 ? primary 'Sawaya, M.R.' 5 0000-0003-0874-9043 primary 'Cascio, D.' 6 0000-0001-8285-754X primary 'Gonen, T.' 7 0000-0002-9254-4069 primary 'Eisenberg, D.S.' 8 0000-0003-2432-5419 primary 'Clarke, S.G.' 9 ? # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 101.900 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 6NB9 _cell.details ? _cell.formula_units_Z ? _cell.length_a 29.200 _cell.length_a_esd ? _cell.length_b 4.870 _cell.length_b_esd ? _cell.length_c 32.440 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 2 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6NB9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'Amyloid-beta A4 protein' 1491.666 1 ? 'L-isoaspartate 23' 'residues 20-34' ? 2 water nat water 18.015 4 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name ;ABPP,APPI,APP,Alzheimer disease amyloid protein,Amyloid precursor protein,Amyloid-beta precursor protein,Cerebral vascular amyloid peptide,CVAP,PreA4,Protease nexin-II,PN-II ; # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'FAE(IAS)VGSNKGAIIGL' _entity_poly.pdbx_seq_one_letter_code_can FAEDVGSNKGAIIGL _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 PHE n 1 2 ALA n 1 3 GLU n 1 4 IAS n 1 5 VAL n 1 6 GLY n 1 7 SER n 1 8 ASN n 1 9 LYS n 1 10 GLY n 1 11 ALA n 1 12 ILE n 1 13 ILE n 1 14 GLY n 1 15 LEU n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 15 _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name Human _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details human # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code A4_HUMAN _struct_ref.pdbx_db_accession P05067 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code FAEDVGSNKGAIIGL _struct_ref.pdbx_align_begin 691 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 6NB9 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 15 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P05067 _struct_ref_seq.db_align_beg 691 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 705 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 20 _struct_ref_seq.pdbx_auth_seq_align_end 34 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 6NB9 _struct_ref_seq_dif.mon_id IAS _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 4 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code P05067 _struct_ref_seq_dif.db_mon_id ASP _struct_ref_seq_dif.pdbx_seq_db_seq_num 694 _struct_ref_seq_dif.details 'engineered mutation' _struct_ref_seq_dif.pdbx_auth_seq_num 23 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 IAS 'L-beta-peptide, C-gamma linking' . 'BETA-L-ASPARTIC ACID' 'L-aspartic acid' 'C4 H7 N O4' 133.103 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6NB9 _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON CRYSTALLOGRAPHY' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 1.51 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 18.76 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method BATCH _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7.6 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 310 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.05M Tris-HCl, 0.15M NaCl, 1% DMSO' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment ? # _diffrn_detector.details ? _diffrn_detector.detector 'CMOS CAMERA' _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'CETA 16M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2018-04-13 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.0251 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source 'ELECTRON MICROSCOPE' _diffrn_source.target ? _diffrn_source.type 'TALOS ARCTICA' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.0251 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_synchrotron_site ? # _reflns.B_iso_Wilson_estimate 9.691 _reflns.entry_id 6NB9 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.050 _reflns.d_resolution_low 5.955 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 3946 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 82.700 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 4.189 _reflns.pdbx_Rmerge_I_obs 0.197 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 3.760 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 0.888 _reflns.pdbx_scaling_rejects 16 _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all 0.224 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all 16529 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.984 _reflns.pdbx_R_split ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_R_split 1.050 1.100 ? 1.400 ? 974 594 ? 315 53.000 ? ? ? ? 0.494 ? ? ? ? ? ? ? ? 3.092 ? ? ? ? 0.589 ? ? 1 1 0.779 ? 1.100 1.150 ? 1.690 ? 1794 511 ? 452 88.500 ? ? ? ? 0.603 ? ? ? ? ? ? ? ? 3.969 ? ? ? ? 0.690 ? ? 2 1 0.661 ? 1.150 1.200 ? 2.210 ? 2024 443 ? 392 88.500 ? ? ? ? 0.509 ? ? ? ? ? ? ? ? 5.163 ? ? ? ? 0.570 ? ? 3 1 0.661 ? 1.200 1.300 ? 2.430 ? 2436 645 ? 567 87.900 ? ? ? ? 0.413 ? ? ? ? ? ? ? ? 4.296 ? ? ? ? 0.471 ? ? 4 1 0.832 ? 1.300 1.400 ? 2.800 ? 1630 469 ? 424 90.400 ? ? ? ? 0.347 ? ? ? ? ? ? ? ? 3.844 ? ? ? ? 0.403 ? ? 5 1 0.876 ? 1.400 1.500 ? 3.380 ? 1432 376 ? 333 88.600 ? ? ? ? 0.330 ? ? ? ? ? ? ? ? 4.300 ? ? ? ? 0.378 ? ? 6 1 0.851 ? 1.500 2.000 ? 5.410 ? 3712 943 ? 832 88.200 ? ? ? ? 0.219 ? ? ? ? ? ? ? ? 4.462 ? ? ? ? 0.246 ? ? 7 1 0.952 ? 2.000 3.000 ? 7.320 ? 1853 529 ? 450 85.100 ? ? ? ? 0.159 ? ? ? ? ? ? ? ? 4.118 ? ? ? ? 0.182 ? ? 8 1 0.975 ? 3.000 5.000 ? 7.660 ? 650 201 ? 171 85.100 ? ? ? ? 0.129 ? ? ? ? ? ? ? ? 3.801 ? ? ? ? 0.145 ? ? 9 1 0.980 ? 5.000 5.955 ? 5.920 ? 22 58 ? 10 17.200 ? ? ? ? 0.076 ? ? ? ? ? ? ? ? 2.200 ? ? ? ? 0.105 ? ? 10 1 0.989 ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max 34.450 _refine.B_iso_mean 10.1351 _refine.B_iso_min 3.360 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6NB9 _refine.pdbx_refine_id 'ELECTRON CRYSTALLOGRAPHY' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.0500 _refine.ls_d_res_low 5.9550 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 3943 _refine.ls_number_reflns_R_free 394 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 83.4500 _refine.ls_percent_reflns_R_free 9.9900 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2022 _refine.ls_R_factor_R_free 0.2458 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1976 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.360 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'AB INITIO PHASING' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details Random _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 28.4000 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.1000 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'ELECTRON CRYSTALLOGRAPHY' _refine_hist.d_res_high 1.0500 _refine_hist.d_res_low 5.9550 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 4 _refine_hist.number_atoms_total 109 _refine_hist.pdbx_number_residues_total 15 _refine_hist.pdbx_B_iso_mean_solvent 27.22 _refine_hist.pdbx_number_atoms_protein 105 _refine_hist.pdbx_number_atoms_nucleic_acid 0 # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'ELECTRON CRYSTALLOGRAPHY' 1.0501 1.2010 1167 . 116 1051 75.0000 . . . 0.3257 0.0000 0.2697 . . . . . . 3 . . . 'ELECTRON CRYSTALLOGRAPHY' 1.2010 1.5090 1340 . 134 1206 89.0000 . . . 0.2482 0.0000 0.2373 . . . . . . 3 . . . 'ELECTRON CRYSTALLOGRAPHY' 1.5090 5.9546 1436 . 144 1292 86.0000 . . . 0.2233 0.0000 0.1676 . . . . . . 3 . . . # _struct.entry_id 6NB9 _struct.title 'Amyloid-Beta (20-34) with L-isoaspartate 23' _struct.pdbx_model_details ;Protofilament structure of Amyloid-beta 20-34 with the age-associated post-translational modification of aspartate isomerization at position 23 ; _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6NB9 _struct_keywords.text 'protofilament, 2 sub 1 screw symmetry, post-translational modification, isoaspartate, PROTEIN FIBRIL' _struct_keywords.pdbx_keywords 'PROTEIN FIBRIL' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A GLU 3 C ? ? ? 1_555 A IAS 4 N ? ? A GLU 22 A IAS 23 1_555 ? ? ? ? ? ? ? 1.344 ? ? covale2 covale both ? A IAS 4 CG ? ? ? 1_555 A VAL 5 N ? ? A IAS 23 A VAL 24 1_555 ? ? ? ? ? ? ? 1.328 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _atom_sites.entry_id 6NB9 _atom_sites.fract_transf_matrix[1][1] 0.034247 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.007215 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.205339 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.031503 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C H N O # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_alt_id _atom_site.label_comp_id _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.label_seq_id _atom_site.pdbx_PDB_ins_code _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_seq_id _atom_site.auth_comp_id _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.pdbx_PDB_model_num ATOM 1 N N . PHE A 1 1 ? -2.742 4.069 13.977 1.00 7.19 ? 20 PHE A N 1 ATOM 2 C CA . PHE A 1 1 ? -1.707 3.213 13.358 1.00 5.45 ? 20 PHE A CA 1 ATOM 3 C C . PHE A 1 1 ? -0.424 4.026 13.182 1.00 5.06 ? 20 PHE A C 1 ATOM 4 O O . PHE A 1 1 ? -0.460 5.270 13.338 1.00 4.87 ? 20 PHE A O 1 ATOM 5 C CB . PHE A 1 1 ? -2.189 2.644 11.987 1.00 6.42 ? 20 PHE A CB 1 ATOM 6 C CG . PHE A 1 1 ? -2.300 3.667 10.857 1.00 5.84 ? 20 PHE A CG 1 ATOM 7 C CD1 . PHE A 1 1 ? -3.436 4.377 10.616 1.00 7.35 ? 20 PHE A CD1 1 ATOM 8 C CD2 . PHE A 1 1 ? -1.229 3.876 9.974 1.00 6.85 ? 20 PHE A CD2 1 ATOM 9 C CE1 . PHE A 1 1 ? -3.537 5.305 9.581 1.00 7.72 ? 20 PHE A CE1 1 ATOM 10 C CE2 . PHE A 1 1 ? -1.338 4.865 8.963 1.00 7.44 ? 20 PHE A CE2 1 ATOM 11 C CZ . PHE A 1 1 ? -2.457 5.525 8.769 1.00 7.30 ? 20 PHE A CZ 1 ATOM 12 H HA . PHE A 1 1 ? -1.528 2.448 13.926 1.00 6.66 ? 20 PHE A HA 1 ATOM 13 H HB2 . PHE A 1 1 ? -1.560 1.963 11.700 1.00 7.82 ? 20 PHE A HB2 1 ATOM 14 H HB3 . PHE A 1 1 ? -3.068 2.252 12.110 1.00 7.82 ? 20 PHE A HB3 1 ATOM 15 H HD1 . PHE A 1 1 ? -4.174 4.237 11.164 1.00 8.93 ? 20 PHE A HD1 1 ATOM 16 H HD2 . PHE A 1 1 ? -0.452 3.370 10.051 1.00 8.34 ? 20 PHE A HD2 1 ATOM 17 H HE1 . PHE A 1 1 ? -4.331 5.770 9.444 1.00 9.37 ? 20 PHE A HE1 1 ATOM 18 H HE2 . PHE A 1 1 ? -0.602 5.051 8.426 1.00 9.05 ? 20 PHE A HE2 1 ATOM 19 H HZ . PHE A 1 1 ? -2.516 6.144 8.078 1.00 8.88 ? 20 PHE A HZ 1 ATOM 20 N N . ALA A 1 2 ? 0.712 3.358 12.974 1.00 5.86 ? 21 ALA A N 1 ATOM 21 C CA . ALA A 1 2 ? 2.018 3.987 12.907 1.00 6.19 ? 21 ALA A CA 1 ATOM 22 C C . ALA A 1 2 ? 2.330 4.772 14.191 1.00 6.67 ? 21 ALA A C 1 ATOM 23 O O . ALA A 1 2 ? 2.437 6.009 14.203 1.00 6.46 ? 21 ALA A O 1 ATOM 24 C CB . ALA A 1 2 ? 2.127 4.893 11.660 1.00 7.73 ? 21 ALA A CB 1 ATOM 25 H H . ALA A 1 2 ? 0.745 2.506 12.866 1.00 7.14 ? 21 ALA A H 1 ATOM 26 H HA . ALA A 1 2 ? 2.684 3.286 12.832 1.00 7.55 ? 21 ALA A HA 1 ATOM 27 H HB1 . ALA A 1 2 ? 3.008 5.299 11.640 1.00 9.39 ? 21 ALA A HB1 1 ATOM 28 H HB2 . ALA A 1 2 ? 1.994 4.353 10.865 1.00 9.39 ? 21 ALA A HB2 1 ATOM 29 H HB3 . ALA A 1 2 ? 1.446 5.582 11.709 1.00 9.39 ? 21 ALA A HB3 1 ATOM 30 N N . GLU A 1 3 ? 2.443 4.039 15.286 1.00 6.27 ? 22 GLU A N 1 ATOM 31 C CA . GLU A 1 3 ? 2.561 4.573 16.630 1.00 7.51 ? 22 GLU A CA 1 ATOM 32 C C . GLU A 1 3 ? 3.691 3.948 17.389 1.00 5.71 ? 22 GLU A C 1 ATOM 33 O O . GLU A 1 3 ? 3.748 2.734 17.464 1.00 7.17 ? 22 GLU A O 1 ATOM 34 C CB . GLU A 1 3 ? 1.237 4.287 17.458 1.00 12.84 ? 22 GLU A CB 1 ATOM 35 C CG . GLU A 1 3 ? 0.026 4.917 16.972 1.00 16.16 ? 22 GLU A CG 1 ATOM 36 C CD . GLU A 1 3 ? -1.273 4.177 17.384 1.00 15.53 ? 22 GLU A CD 1 ATOM 37 O OE1 . GLU A 1 3 ? -1.242 3.403 18.368 1.00 16.06 ? 22 GLU A OE1 1 ATOM 38 O OE2 . GLU A 1 3 ? -2.306 4.352 16.703 1.00 15.00 ? 22 GLU A OE2 1 ATOM 39 H H . GLU A 1 3 ? 2.453 3.179 15.277 1.00 7.64 ? 22 GLU A H 1 ATOM 40 H HA . GLU A 1 3 ? 2.717 5.527 16.547 1.00 9.13 ? 22 GLU A HA 1 ATOM 41 H HB2 . GLU A 1 3 ? 1.080 3.330 17.456 1.00 15.52 ? 22 GLU A HB2 1 ATOM 42 H HB3 . GLU A 1 3 ? 1.375 4.599 18.366 1.00 15.52 ? 22 GLU A HB3 1 ATOM 43 H HG2 . GLU A 1 3 ? -0.022 5.818 17.328 1.00 19.50 ? 22 GLU A HG2 1 ATOM 44 H HG3 . GLU A 1 3 ? 0.055 4.945 16.003 1.00 19.50 ? 22 GLU A HG3 1 HETATM 45 N N . IAS A 1 4 ? 4.523 4.797 18.017 1.00 6.12 ? 23 IAS A N 1 HETATM 46 C CA . IAS A 1 4 ? 5.628 4.375 18.948 1.00 6.43 ? 23 IAS A CA 1 HETATM 47 C C . IAS A 1 4 ? 5.377 4.996 20.314 1.00 11.97 ? 23 IAS A C 1 HETATM 48 O O . IAS A 1 4 ? 4.696 6.060 20.367 1.00 15.63 ? 23 IAS A O 1 HETATM 49 C CB . IAS A 1 4 ? 6.997 4.832 18.352 1.00 6.51 ? 23 IAS A CB 1 HETATM 50 C CG . IAS A 1 4 ? 7.296 4.123 16.995 1.00 5.31 ? 23 IAS A CG 1 HETATM 51 O OD1 . IAS A 1 4 ? 7.445 2.928 16.964 1.00 6.52 ? 23 IAS A OD1 1 HETATM 52 O OXT . IAS A 1 4 ? 5.864 4.429 21.313 1.00 12.42 ? 23 IAS A OXT 1 ATOM 53 N N . VAL A 1 5 ? 7.643 4.999 16.059 1.00 5.35 ? 24 VAL A N 1 ATOM 54 C CA . VAL A 1 5 ? 8.144 4.553 14.705 1.00 4.42 ? 24 VAL A CA 1 ATOM 55 C C . VAL A 1 5 ? 9.554 5.157 14.463 1.00 3.55 ? 24 VAL A C 1 ATOM 56 O O . VAL A 1 5 ? 9.688 6.384 14.496 1.00 4.20 ? 24 VAL A O 1 ATOM 57 C CB . VAL A 1 5 ? 7.191 4.901 13.558 1.00 5.80 ? 24 VAL A CB 1 ATOM 58 C CG1 . VAL A 1 5 ? 7.731 4.431 12.151 1.00 7.09 ? 24 VAL A CG1 1 ATOM 59 C CG2 . VAL A 1 5 ? 5.807 4.339 13.735 1.00 8.25 ? 24 VAL A CG2 1 ATOM 60 H H . VAL A 1 5 ? 7.607 5.853 16.157 1.00 6.53 ? 24 VAL A H 1 ATOM 61 H HA . VAL A 1 5 ? 8.200 3.584 14.708 1.00 5.42 ? 24 VAL A HA 1 ATOM 62 H HB . VAL A 1 5 ? 7.140 5.870 13.579 1.00 7.07 ? 24 VAL A HB 1 ATOM 63 H HG11 . VAL A 1 5 ? 7.030 4.545 11.490 1.00 8.63 ? 24 VAL A HG11 1 ATOM 64 H HG12 . VAL A 1 5 ? 8.501 4.970 11.912 1.00 8.63 ? 24 VAL A HG12 1 ATOM 65 H HG13 . VAL A 1 5 ? 7.985 3.497 12.206 1.00 8.63 ? 24 VAL A HG13 1 ATOM 66 H HG21 . VAL A 1 5 ? 5.254 4.622 12.989 1.00 10.02 ? 24 VAL A HG21 1 ATOM 67 H HG22 . VAL A 1 5 ? 5.860 3.371 13.759 1.00 10.02 ? 24 VAL A HG22 1 ATOM 68 H HG23 . VAL A 1 5 ? 5.435 4.671 14.567 1.00 10.02 ? 24 VAL A HG23 1 ATOM 69 N N . GLY A 1 6 ? 10.566 4.301 14.312 1.00 3.78 ? 25 GLY A N 1 ATOM 70 C CA . GLY A 1 6 ? 11.933 4.748 14.129 1.00 3.75 ? 25 GLY A CA 1 ATOM 71 C C . GLY A 1 6 ? 12.196 5.386 12.761 1.00 3.99 ? 25 GLY A C 1 ATOM 72 O O . GLY A 1 6 ? 12.394 6.603 12.659 1.00 4.12 ? 25 GLY A O 1 ATOM 73 H H . GLY A 1 6 ? 10.479 3.446 14.312 1.00 4.65 ? 25 GLY A H 1 ATOM 74 H HA2 . GLY A 1 6 ? 12.144 5.404 14.812 1.00 4.61 ? 25 GLY A HA2 1 ATOM 75 H HA3 . GLY A 1 6 ? 12.528 3.988 14.226 1.00 4.61 ? 25 GLY A HA3 1 ATOM 76 N N . SER A 1 7 ? 12.178 4.577 11.698 1.00 4.14 ? 26 SER A N 1 ATOM 77 C CA . SER A 1 7 ? 12.493 4.947 10.310 1.00 4.73 ? 26 SER A CA 1 ATOM 78 C C . SER A 1 7 ? 11.531 4.286 9.319 1.00 4.97 ? 26 SER A C 1 ATOM 79 O O . SER A 1 7 ? 11.351 3.049 9.300 1.00 5.13 ? 26 SER A O 1 ATOM 80 C CB . SER A 1 7 ? 13.919 4.485 9.957 1.00 6.50 ? 26 SER A CB 1 ATOM 81 O OG . SER A 1 7 ? 14.194 4.755 8.634 1.00 10.19 ? 26 SER A OG 1 ATOM 82 H H . SER A 1 7 ? 11.972 3.744 11.758 1.00 5.09 ? 26 SER A H 1 ATOM 83 H HA . SER A 1 7 ? 12.393 5.909 10.227 1.00 5.80 ? 26 SER A HA 1 ATOM 84 H HB2 . SER A 1 7 ? 14.555 4.958 10.517 1.00 7.91 ? 26 SER A HB2 1 ATOM 85 H HB3 . SER A 1 7 ? 13.991 3.530 10.109 1.00 7.91 ? 26 SER A HB3 1 ATOM 86 H HG . SER A 1 7 ? 14.253 5.585 8.517 1.00 12.34 ? 26 SER A HG 1 ATOM 87 N N . ASN A 1 8 ? 10.914 5.147 8.498 1.00 5.34 ? 27 ASN A N 1 ATOM 88 C CA . ASN A 1 8 ? 10.057 4.709 7.386 1.00 4.56 ? 27 ASN A CA 1 ATOM 89 C C . ASN A 1 8 ? 10.552 5.170 5.992 1.00 5.28 ? 27 ASN A C 1 ATOM 90 O O . ASN A 1 8 ? 10.550 6.371 5.676 1.00 6.55 ? 27 ASN A O 1 ATOM 91 C CB . ASN A 1 8 ? 8.605 5.188 7.560 1.00 5.12 ? 27 ASN A CB 1 ATOM 92 C CG . ASN A 1 8 ? 7.681 4.628 6.415 1.00 4.01 ? 27 ASN A CG 1 ATOM 93 O OD1 . ASN A 1 8 ? 7.669 3.423 6.147 1.00 4.86 ? 27 ASN A OD1 1 ATOM 94 N ND2 . ASN A 1 8 ? 7.010 5.529 5.699 1.00 4.90 ? 27 ASN A ND2 1 ATOM 95 H H . ASN A 1 8 ? 10.979 6.002 8.568 1.00 6.52 ? 27 ASN A H 1 ATOM 96 H HA . ASN A 1 8 ? 10.126 3.742 7.407 1.00 5.59 ? 27 ASN A HA 1 ATOM 97 H HB2 . ASN A 1 8 ? 8.261 4.876 8.411 1.00 6.26 ? 27 ASN A HB2 1 ATOM 98 H HB3 . ASN A 1 8 ? 8.579 6.158 7.527 1.00 6.26 ? 27 ASN A HB3 1 ATOM 99 H HD21 . ASN A 1 8 ? 6.492 5.273 5.062 1.00 6.00 ? 27 ASN A HD21 1 ATOM 100 H HD22 . ASN A 1 8 ? 7.095 6.367 5.873 1.00 6.00 ? 27 ASN A HD22 1 ATOM 101 N N . LYS A 1 9 ? 10.979 4.229 5.148 1.00 5.55 ? 28 LYS A N 1 ATOM 102 C CA . LYS A 1 9 ? 11.337 4.480 3.745 1.00 6.36 ? 28 LYS A CA 1 ATOM 103 C C . LYS A 1 9 ? 10.334 3.888 2.745 1.00 6.34 ? 28 LYS A C 1 ATOM 104 O O . LYS A 1 9 ? 10.418 4.150 1.532 1.00 8.75 ? 28 LYS A O 1 ATOM 105 C CB . LYS A 1 9 ? 12.735 3.904 3.447 1.00 8.56 ? 28 LYS A CB 1 ATOM 106 C CG . LYS A 1 9 ? 13.859 4.727 4.078 1.00 12.54 ? 28 LYS A CG 1 ATOM 107 C CD . LYS A 1 9 ? 15.184 4.253 3.474 1.00 15.66 ? 28 LYS A CD 1 ATOM 108 C CE . LYS A 1 9 ? 16.244 5.253 3.747 1.00 19.68 ? 28 LYS A CE 1 ATOM 109 N NZ . LYS A 1 9 ? 16.431 5.403 5.214 1.00 22.56 ? 28 LYS A NZ 1 ATOM 110 H H . LYS A 1 9 ? 11.075 3.404 5.371 1.00 6.77 ? 28 LYS A H 1 ATOM 111 H HA . LYS A 1 9 ? 11.369 5.439 3.601 1.00 7.74 ? 28 LYS A HA 1 ATOM 112 H HB2 . LYS A 1 9 ? 12.787 3.002 3.801 1.00 10.39 ? 28 LYS A HB2 1 ATOM 113 H HB3 . LYS A 1 9 ? 12.874 3.892 2.487 1.00 10.39 ? 28 LYS A HB3 1 ATOM 114 H HG2 . LYS A 1 9 ? 13.736 5.669 3.881 1.00 15.16 ? 28 LYS A HG2 1 ATOM 115 H HG3 . LYS A 1 9 ? 13.877 4.589 5.038 1.00 15.16 ? 28 LYS A HG3 1 ATOM 116 H HD2 . LYS A 1 9 ? 15.442 3.408 3.873 1.00 18.90 ? 28 LYS A HD2 1 ATOM 117 H HD3 . LYS A 1 9 ? 15.089 4.153 2.514 1.00 18.90 ? 28 LYS A HD3 1 ATOM 118 H HE2 . LYS A 1 9 ? 17.081 4.959 3.354 1.00 23.73 ? 28 LYS A HE2 1 ATOM 119 H HE3 . LYS A 1 9 ? 15.988 6.112 3.375 1.00 23.73 ? 28 LYS A HE3 1 ATOM 120 H HZ1 . LYS A 1 9 ? 15.729 5.820 5.569 1.00 27.19 ? 28 LYS A HZ1 1 ATOM 121 H HZ2 . LYS A 1 9 ? 16.513 4.602 5.594 1.00 27.19 ? 28 LYS A HZ2 1 ATOM 122 H HZ3 . LYS A 1 9 ? 17.164 5.879 5.381 1.00 27.19 ? 28 LYS A HZ3 1 ATOM 123 N N . GLY A 1 10 ? 9.332 3.174 3.232 1.00 5.57 ? 29 GLY A N 1 ATOM 124 C CA . GLY A 1 10 ? 8.315 2.495 2.432 1.00 4.76 ? 29 GLY A CA 1 ATOM 125 C C . GLY A 1 10 ? 6.974 3.170 2.540 1.00 4.61 ? 29 GLY A C 1 ATOM 126 O O . GLY A 1 10 ? 6.909 4.400 2.695 1.00 4.35 ? 29 GLY A O 1 ATOM 127 H H . GLY A 1 10 ? 9.206 3.057 4.075 1.00 6.80 ? 29 GLY A H 1 ATOM 128 H HA2 . GLY A 1 10 ? 8.585 2.493 1.501 1.00 5.83 ? 29 GLY A HA2 1 ATOM 129 H HA3 . GLY A 1 10 ? 8.224 1.578 2.736 1.00 5.83 ? 29 GLY A HA3 1 ATOM 130 N N . ALA A 1 11 ? 5.915 2.344 2.526 1.00 4.39 ? 30 ALA A N 1 ATOM 131 C CA . ALA A 1 11 ? 4.540 2.785 2.622 1.00 3.68 ? 30 ALA A CA 1 ATOM 132 C C . ALA A 1 11 ? 3.863 2.213 3.866 1.00 3.68 ? 30 ALA A C 1 ATOM 133 O O . ALA A 1 11 ? 3.886 1.007 4.077 1.00 5.20 ? 30 ALA A O 1 ATOM 134 C CB . ALA A 1 11 ? 3.762 2.412 1.348 1.00 5.90 ? 30 ALA A CB 1 ATOM 135 H H . ALA A 1 11 ? 5.988 1.490 2.459 1.00 5.38 ? 30 ALA A H 1 ATOM 136 H HA . ALA A 1 11 ? 4.527 3.750 2.725 1.00 4.53 ? 30 ALA A HA 1 ATOM 137 H HB1 . ALA A 1 11 ? 2.843 2.708 1.441 1.00 7.20 ? 30 ALA A HB1 1 ATOM 138 H HB2 . ALA A 1 11 ? 4.174 2.850 0.587 1.00 7.20 ? 30 ALA A HB2 1 ATOM 139 H HB3 . ALA A 1 11 ? 3.790 1.450 1.231 1.00 7.20 ? 30 ALA A HB3 1 ATOM 140 N N . ILE A 1 12 ? 3.192 3.053 4.645 1.00 3.78 ? 31 ILE A N 1 ATOM 141 C CA . ILE A 1 12 ? 2.332 2.618 5.751 1.00 3.36 ? 31 ILE A CA 1 ATOM 142 C C . ILE A 1 12 ? 0.986 3.294 5.520 1.00 5.00 ? 31 ILE A C 1 ATOM 143 O O . ILE A 1 12 ? 0.891 4.526 5.639 1.00 4.82 ? 31 ILE A O 1 ATOM 144 C CB . ILE A 1 12 ? 2.890 2.918 7.185 1.00 4.47 ? 31 ILE A CB 1 ATOM 145 C CG1 . ILE A 1 12 ? 4.347 2.458 7.406 1.00 4.69 ? 31 ILE A CG1 1 ATOM 146 C CG2 . ILE A 1 12 ? 1.976 2.327 8.249 1.00 5.68 ? 31 ILE A CG2 1 ATOM 147 C CD1 . ILE A 1 12 ? 5.012 2.826 8.746 1.00 6.37 ? 31 ILE A CD1 1 ATOM 148 H H . ILE A 1 12 ? 3.218 3.908 4.551 1.00 4.65 ? 31 ILE A H 1 ATOM 149 H HA . ILE A 1 12 ? 2.233 1.654 5.708 1.00 4.14 ? 31 ILE A HA 1 ATOM 150 H HB . ILE A 1 12 ? 2.903 3.885 7.262 1.00 5.48 ? 31 ILE A HB 1 ATOM 151 H HG12 . ILE A 1 12 ? 4.367 1.491 7.339 1.00 5.74 ? 31 ILE A HG12 1 ATOM 152 H HG13 . ILE A 1 12 ? 4.892 2.851 6.705 1.00 5.74 ? 31 ILE A HG13 1 ATOM 153 H HG21 . ILE A 1 12 ? 2.297 2.594 9.125 1.00 6.93 ? 31 ILE A HG21 1 ATOM 154 H HG22 . ILE A 1 12 ? 1.075 2.660 8.112 1.00 6.93 ? 31 ILE A HG22 1 ATOM 155 H HG23 . ILE A 1 12 ? 1.987 1.360 8.174 1.00 6.93 ? 31 ILE A HG23 1 ATOM 156 H HD11 . ILE A 1 12 ? 5.951 2.589 8.708 1.00 7.76 ? 31 ILE A HD11 1 ATOM 157 H HD12 . ILE A 1 12 ? 4.918 3.780 8.893 1.00 7.76 ? 31 ILE A HD12 1 ATOM 158 H HD13 . ILE A 1 12 ? 4.575 2.336 9.460 1.00 7.76 ? 31 ILE A HD13 1 ATOM 159 N N . ILE A 1 13 ? -0.042 2.520 5.150 1.00 4.81 ? 32 ILE A N 1 ATOM 160 C CA . ILE A 1 13 ? -1.287 3.052 4.607 1.00 5.29 ? 32 ILE A CA 1 ATOM 161 C C . ILE A 1 13 ? -2.486 2.451 5.313 1.00 4.87 ? 32 ILE A C 1 ATOM 162 O O . ILE A 1 13 ? -2.595 1.221 5.376 1.00 5.09 ? 32 ILE A O 1 ATOM 163 C CB . ILE A 1 13 ? -1.443 2.821 3.095 1.00 7.73 ? 32 ILE A CB 1 ATOM 164 C CG1 . ILE A 1 13 ? -0.173 3.084 2.272 1.00 10.00 ? 32 ILE A CG1 1 ATOM 165 C CG2 . ILE A 1 13 ? -2.655 3.527 2.524 1.00 9.32 ? 32 ILE A CG2 1 ATOM 166 C CD1 . ILE A 1 13 ? 0.208 4.432 2.049 1.00 10.76 ? 32 ILE A CD1 1 ATOM 167 H H . ILE A 1 13 ? -0.034 1.662 5.207 1.00 5.89 ? 32 ILE A H 1 ATOM 168 H HA . ILE A 1 13 ? -1.266 4.005 4.790 1.00 6.46 ? 32 ILE A HA 1 ATOM 169 H HB . ILE A 1 13 ? -1.596 1.866 3.012 1.00 9.40 ? 32 ILE A HB 1 ATOM 170 H HG12 . ILE A 1 13 ? 0.569 2.658 2.728 1.00 12.11 ? 32 ILE A HG12 1 ATOM 171 H HG13 . ILE A 1 13 ? -0.299 2.683 1.397 1.00 12.11 ? 32 ILE A HG13 1 ATOM 172 H HG21 . ILE A 1 13 ? -2.623 3.477 1.556 1.00 11.30 ? 32 ILE A HG21 1 ATOM 173 H HG22 . ILE A 1 13 ? -3.457 3.092 2.852 1.00 11.30 ? 32 ILE A HG22 1 ATOM 174 H HG23 . ILE A 1 13 ? -2.642 4.455 2.808 1.00 11.30 ? 32 ILE A HG23 1 ATOM 175 H HD11 . ILE A 1 13 ? 1.086 4.449 1.638 1.00 13.02 ? 32 ILE A HD11 1 ATOM 176 H HD12 . ILE A 1 13 ? -0.440 4.851 1.462 1.00 13.02 ? 32 ILE A HD12 1 ATOM 177 H HD13 . ILE A 1 13 ? 0.232 4.898 2.900 1.00 13.02 ? 32 ILE A HD13 1 ATOM 178 N N . GLY A 1 14 ? -3.356 3.296 5.899 1.00 5.90 ? 33 GLY A N 1 ATOM 179 C CA . GLY A 1 14 ? -4.588 2.839 6.528 1.00 7.28 ? 33 GLY A CA 1 ATOM 180 C C . GLY A 1 14 ? -5.798 3.363 5.769 1.00 7.86 ? 33 GLY A C 1 ATOM 181 O O . GLY A 1 14 ? -5.958 4.571 5.644 1.00 9.87 ? 33 GLY A O 1 ATOM 182 H H . GLY A 1 14 ? -3.246 4.147 5.940 1.00 7.19 ? 33 GLY A H 1 ATOM 183 H HA2 . GLY A 1 14 ? -4.615 1.869 6.532 1.00 8.86 ? 33 GLY A HA2 1 ATOM 184 H HA3 . GLY A 1 14 ? -4.627 3.159 7.443 1.00 8.86 ? 33 GLY A HA3 1 ATOM 185 N N . LEU A 1 15 ? -6.609 2.470 5.222 1.00 10.46 ? 34 LEU A N 1 ATOM 186 C CA . LEU A 1 15 ? -7.840 2.867 4.571 1.00 15.63 ? 34 LEU A CA 1 ATOM 187 C C . LEU A 1 15 ? -9.110 2.361 5.310 1.00 20.40 ? 34 LEU A C 1 ATOM 188 O O . LEU A 1 15 ? -9.028 1.516 6.223 1.00 21.58 ? 34 LEU A O 1 ATOM 189 C CB . LEU A 1 15 ? -7.886 2.278 3.152 1.00 20.22 ? 34 LEU A CB 1 ATOM 190 C CG . LEU A 1 15 ? -6.803 2.651 2.160 1.00 22.66 ? 34 LEU A CG 1 ATOM 191 C CD1 . LEU A 1 15 ? -5.753 1.580 2.185 1.00 23.98 ? 34 LEU A CD1 1 ATOM 192 C CD2 . LEU A 1 15 ? -7.399 2.788 0.798 1.00 23.26 ? 34 LEU A CD2 1 ATOM 193 O OXT . LEU A 1 15 ? -10.254 2.775 5.030 1.00 22.33 ? 34 LEU A OXT 1 ATOM 194 H H . LEU A 1 15 ? -6.465 1.622 5.217 1.00 12.67 ? 34 LEU A H 1 ATOM 195 H HA . LEU A 1 15 ? -7.856 3.836 4.556 1.00 18.87 ? 34 LEU A HA 1 ATOM 196 H HB2 . LEU A 1 15 ? -7.856 1.313 3.238 1.00 24.38 ? 34 LEU A HB2 1 ATOM 197 H HB3 . LEU A 1 15 ? -8.727 2.550 2.753 1.00 24.38 ? 34 LEU A HB3 1 ATOM 198 H HG . LEU A 1 15 ? -6.393 3.500 2.388 1.00 27.31 ? 34 LEU A HG 1 ATOM 199 H HD11 . LEU A 1 15 ? -5.006 1.856 1.631 1.00 28.89 ? 34 LEU A HD11 1 ATOM 200 H HD12 . LEU A 1 15 ? -5.456 1.450 3.099 1.00 28.89 ? 34 LEU A HD12 1 ATOM 201 H HD13 . LEU A 1 15 ? -6.133 0.757 1.840 1.00 28.89 ? 34 LEU A HD13 1 ATOM 202 H HD21 . LEU A 1 15 ? -6.687 2.922 0.154 1.00 28.02 ? 34 LEU A HD21 1 ATOM 203 H HD22 . LEU A 1 15 ? -7.890 1.979 0.586 1.00 28.02 ? 34 LEU A HD22 1 ATOM 204 H HD23 . LEU A 1 15 ? -7.999 3.550 0.791 1.00 28.02 ? 34 LEU A HD23 1 HETATM 205 O O . HOH B 2 . ? 13.802 7.025 7.267 1.00 18.24 ? 101 HOH A O 1 HETATM 206 O O . HOH B 2 . ? 5.740 5.182 23.907 1.00 34.45 ? 102 HOH A O 1 HETATM 207 O O . HOH B 2 . ? 11.726 6.358 0.401 1.00 30.34 ? 103 HOH A O 1 HETATM 208 O O . HOH B 2 . ? 14.538 6.599 0.938 1.00 25.86 ? 104 HOH A O 1 # loop_ _atom_site_anisotrop.id _atom_site_anisotrop.type_symbol _atom_site_anisotrop.pdbx_label_atom_id _atom_site_anisotrop.pdbx_label_alt_id _atom_site_anisotrop.pdbx_label_comp_id _atom_site_anisotrop.pdbx_label_asym_id _atom_site_anisotrop.pdbx_label_seq_id _atom_site_anisotrop.pdbx_PDB_ins_code _atom_site_anisotrop.U[1][1] _atom_site_anisotrop.U[2][2] _atom_site_anisotrop.U[3][3] _atom_site_anisotrop.U[1][2] _atom_site_anisotrop.U[1][3] _atom_site_anisotrop.U[2][3] _atom_site_anisotrop.pdbx_auth_seq_id _atom_site_anisotrop.pdbx_auth_comp_id _atom_site_anisotrop.pdbx_auth_asym_id _atom_site_anisotrop.pdbx_auth_atom_id 1 N N . PHE A 1 ? 0.0665 0.1066 0.1001 0.0229 -0.0107 -0.0052 20 PHE A N 2 C CA . PHE A 1 ? 0.0611 0.0622 0.0839 0.0083 -0.0241 0.0015 20 PHE A CA 3 C C . PHE A 1 ? 0.0504 0.0692 0.0729 0.0066 -0.0322 -0.0038 20 PHE A C 4 O O . PHE A 1 ? 0.0508 0.0683 0.0661 0.0173 -0.0302 -0.0040 20 PHE A O 5 C CB . PHE A 1 ? 0.0650 0.0967 0.0824 0.0074 -0.0296 -0.0120 20 PHE A CB 6 C CG . PHE A 1 ? 0.0688 0.0677 0.0855 0.0184 -0.0278 -0.0179 20 PHE A CG 7 C CD1 . PHE A 1 ? 0.0780 0.1152 0.0859 0.0416 -0.0251 -0.0026 20 PHE A CD1 8 C CD2 . PHE A 1 ? 0.0702 0.1004 0.0897 0.0186 -0.0223 -0.0060 20 PHE A CD2 9 C CE1 . PHE A 1 ? 0.0805 0.1252 0.0875 0.0111 -0.0215 0.0094 20 PHE A CE1 10 C CE2 . PHE A 1 ? 0.0751 0.1213 0.0864 0.0210 -0.0271 0.0081 20 PHE A CE2 11 C CZ . PHE A 1 ? 0.0767 0.1160 0.0849 0.0089 -0.0264 0.0163 20 PHE A CZ 20 N N . ALA A 2 ? 0.0539 0.0917 0.0769 0.0192 -0.0240 0.0026 21 ALA A N 21 C CA . ALA A 2 ? 0.0518 0.0927 0.0908 0.0234 -0.0171 0.0014 21 ALA A CA 22 C C . ALA A 2 ? 0.0457 0.1072 0.1007 0.0116 -0.0197 -0.0056 21 ALA A C 23 O O . ALA A 2 ? 0.0474 0.0927 0.1052 0.0024 -0.0170 -0.0122 21 ALA A O 24 C CB . ALA A 2 ? 0.0537 0.1363 0.1037 0.0105 -0.0031 -0.0268 21 ALA A CB 30 N N . GLU A 3 ? 0.0485 0.0890 0.1008 0.0059 -0.0259 -0.0152 22 GLU A N 31 C CA . GLU A 3 ? 0.0631 0.1071 0.1153 0.0062 -0.0294 -0.0302 22 GLU A CA 32 C C . GLU A 3 ? 0.0631 0.0416 0.1122 0.0052 -0.0301 -0.0030 22 GLU A C 33 O O . GLU A 3 ? 0.0697 0.0911 0.1117 -0.0077 -0.0329 0.0054 22 GLU A O 34 C CB . GLU A 3 ? 0.0850 0.2714 0.1313 0.0361 -0.0253 -0.0244 22 GLU A CB 35 C CG . GLU A 3 ? 0.1026 0.3646 0.1466 0.0254 -0.0222 -0.0101 22 GLU A CG 36 C CD . GLU A 3 ? 0.0974 0.3359 0.1568 0.0164 -0.0178 0.0203 22 GLU A CD 37 O OE1 . GLU A 3 ? 0.1019 0.3499 0.1584 0.0229 -0.0149 0.0278 22 GLU A OE1 38 O OE2 . GLU A 3 ? 0.1034 0.3035 0.1629 -0.0038 -0.0109 0.0142 22 GLU A OE2 45 N N . IAS A 4 ? 0.0664 0.0525 0.1134 -0.0103 -0.0208 0.0150 23 IAS A N 46 C CA . IAS A 4 ? 0.0769 0.0533 0.1143 0.0046 -0.0150 0.0053 23 IAS A CA 47 C C . IAS A 4 ? 0.1080 0.2108 0.1362 0.0323 -0.0035 0.0110 23 IAS A C 48 O O . IAS A 4 ? 0.1330 0.3133 0.1475 0.0211 0.0079 -0.0245 23 IAS A O 49 C CB . IAS A 4 ? 0.0623 0.0844 0.1006 -0.0071 -0.0101 -0.0056 23 IAS A CB 50 C CG . IAS A 4 ? 0.0555 0.0521 0.0943 0.0048 -0.0010 -0.0058 23 IAS A CG 51 O OD1 . IAS A 4 ? 0.0663 0.0837 0.0979 -0.0080 0.0025 0.0014 23 IAS A OD1 52 O OXT . IAS A 4 ? 0.1204 0.1972 0.1542 0.0152 0.0091 -0.0024 23 IAS A OXT 53 N N . VAL A 5 ? 0.0423 0.0816 0.0794 -0.0004 -0.0060 -0.0156 24 VAL A N 54 C CA . VAL A 5 ? 0.0297 0.0713 0.0670 -0.0082 -0.0068 0.0133 24 VAL A CA 55 C C . VAL A 5 ? 0.0211 0.0479 0.0660 0.0108 -0.0029 0.0055 24 VAL A C 56 O O . VAL A 5 ? 0.0304 0.0539 0.0752 -0.0072 0.0041 -0.0084 24 VAL A O 57 C CB . VAL A 5 ? 0.0401 0.1160 0.0643 -0.0222 -0.0016 -0.0072 24 VAL A CB 58 C CG1 . VAL A 5 ? 0.0518 0.1640 0.0537 -0.0268 -0.0021 -0.0141 24 VAL A CG1 59 C CG2 . VAL A 5 ? 0.0544 0.1925 0.0667 -0.0188 0.0018 -0.0343 24 VAL A CG2 69 N N . GLY A 6 ? 0.0213 0.0687 0.0536 -0.0006 -0.0081 0.0107 25 GLY A N 70 C CA . GLY A 6 ? 0.0374 0.0599 0.0451 0.0121 -0.0153 0.0147 25 GLY A CA 71 C C . GLY A 6 ? 0.0506 0.0631 0.0380 -0.0009 -0.0139 0.0103 25 GLY A C 72 O O . GLY A 6 ? 0.0569 0.0747 0.0248 -0.0064 -0.0100 0.0119 25 GLY A O 76 N N . SER A 7 ? 0.0618 0.0436 0.0520 0.0013 -0.0148 0.0166 26 SER A N 77 C CA . SER A 7 ? 0.0622 0.0612 0.0565 0.0117 -0.0212 0.0237 26 SER A CA 78 C C . SER A 7 ? 0.0617 0.0740 0.0533 0.0082 -0.0329 0.0041 26 SER A C 79 O O . SER A 7 ? 0.0724 0.0646 0.0579 -0.0012 -0.0381 -0.0039 26 SER A O 80 C CB . SER A 7 ? 0.0730 0.1032 0.0706 -0.0302 -0.0057 0.0085 26 SER A CB 81 O OG . SER A 7 ? 0.0872 0.2192 0.0806 -0.0148 0.0037 0.0422 26 SER A OG 87 N N . ASN A 8 ? 0.0687 0.0821 0.0522 0.0025 -0.0282 -0.0225 27 ASN A N 88 C CA . ASN A 8 ? 0.0713 0.0415 0.0604 0.0025 -0.0131 -0.0113 27 ASN A CA 89 C C . ASN A 8 ? 0.0790 0.0519 0.0696 0.0174 -0.0113 0.0014 27 ASN A C 90 O O . ASN A 8 ? 0.0911 0.0840 0.0739 0.0131 -0.0011 0.0125 27 ASN A O 91 C CB . ASN A 8 ? 0.0618 0.0751 0.0577 0.0102 -0.0078 0.0085 27 ASN A CB 92 C CG . ASN A 8 ? 0.0585 0.0404 0.0535 0.0067 -0.0163 0.0069 27 ASN A CG 93 O OD1 . ASN A 8 ? 0.0557 0.0812 0.0477 -0.0185 -0.0258 0.0127 27 ASN A OD1 94 N ND2 . ASN A 8 ? 0.0697 0.0693 0.0472 0.0101 -0.0151 -0.0041 27 ASN A ND2 101 N N . LYS A 9 ? 0.0723 0.0601 0.0783 0.0081 -0.0098 -0.0030 28 LYS A N 102 C CA . LYS A 9 ? 0.0643 0.0846 0.0926 -0.0009 -0.0099 0.0051 28 LYS A CA 103 C C . LYS A 9 ? 0.0559 0.1021 0.0831 -0.0174 -0.0118 0.0207 28 LYS A C 104 O O . LYS A 9 ? 0.0665 0.1842 0.0816 -0.0453 -0.0097 0.0162 28 LYS A O 105 C CB . LYS A 9 ? 0.0745 0.1325 0.1183 -0.0045 -0.0050 -0.0096 28 LYS A CB 106 C CG . LYS A 9 ? 0.0982 0.2309 0.1474 0.0059 0.0076 -0.0217 28 LYS A CG 107 C CD . LYS A 9 ? 0.1162 0.3200 0.1586 0.0131 0.0179 -0.0406 28 LYS A CD 108 C CE . LYS A 9 ? 0.1412 0.4403 0.1662 -0.0047 0.0295 -0.0230 28 LYS A CE 109 N NZ . LYS A 9 ? 0.1571 0.5291 0.1711 -0.0085 0.0305 -0.0216 28 LYS A NZ 123 N N . GLY A 10 ? 0.0481 0.0830 0.0806 -0.0044 -0.0099 0.0109 29 GLY A N 124 C CA . GLY A 10 ? 0.0409 0.0697 0.0704 0.0026 -0.0095 0.0158 29 GLY A CA 125 C C . GLY A 10 ? 0.0346 0.0714 0.0693 -0.0087 -0.0067 -0.0108 29 GLY A C 126 O O . GLY A 10 ? 0.0382 0.0569 0.0701 -0.0072 -0.0071 -0.0020 29 GLY A O 130 N N . ALA A 11 ? 0.0314 0.0717 0.0635 -0.0100 -0.0043 0.0228 30 ALA A N 131 C CA . ALA A 11 ? 0.0276 0.0505 0.0617 0.0012 0.0023 0.0241 30 ALA A CA 132 C C . ALA A 11 ? 0.0300 0.0456 0.0642 0.0126 0.0122 0.0216 30 ALA A C 133 O O . ALA A 11 ? 0.0388 0.0908 0.0680 0.0102 0.0232 0.0136 30 ALA A O 134 C CB . ALA A 11 ? 0.0433 0.1174 0.0635 0.0240 0.0048 0.0331 30 ALA A CB 140 N N . ILE A 12 ? 0.0276 0.0455 0.0705 0.0102 0.0005 0.0218 31 ILE A N 141 C CA . ILE A 12 ? 0.0308 0.0275 0.0692 0.0110 -0.0004 0.0060 31 ILE A CA 142 C C . ILE A 12 ? 0.0381 0.0677 0.0843 0.0278 0.0015 0.0007 31 ILE A C 143 O O . ILE A 12 ? 0.0423 0.0498 0.0911 0.0158 0.0096 -0.0070 31 ILE A O 144 C CB . ILE A 12 ? 0.0268 0.0710 0.0721 0.0160 -0.0089 -0.0059 31 ILE A CB 145 C CG1 . ILE A 12 ? 0.0431 0.0607 0.0742 0.0000 -0.0028 -0.0258 31 ILE A CG1 146 C CG2 . ILE A 12 ? 0.0306 0.1100 0.0752 0.0070 -0.0100 -0.0066 31 ILE A CG2 147 C CD1 . ILE A 12 ? 0.0494 0.1128 0.0799 0.0219 -0.0050 -0.0277 31 ILE A CD1 159 N N . ILE A 13 ? 0.0426 0.0603 0.0800 0.0140 -0.0061 0.0300 32 ILE A N 160 C CA . ILE A 13 ? 0.0485 0.0504 0.1022 0.0086 -0.0069 0.0066 32 ILE A CA 161 C C . ILE A 13 ? 0.0363 0.0415 0.1073 0.0083 -0.0095 0.0115 32 ILE A C 162 O O . ILE A 13 ? 0.0323 0.0559 0.1051 0.0017 -0.0054 0.0155 32 ILE A O 163 C CB . ILE A 13 ? 0.0633 0.1180 0.1126 0.0124 -0.0146 0.0466 32 ILE A CB 164 C CG1 . ILE A 13 ? 0.0838 0.1706 0.1255 0.0001 -0.0053 0.0474 32 ILE A CG1 165 C CG2 . ILE A 13 ? 0.0687 0.1676 0.1179 -0.0057 -0.0192 0.0422 32 ILE A CG2 166 C CD1 . ILE A 13 ? 0.0960 0.1836 0.1291 0.0305 0.0064 0.0313 32 ILE A CD1 178 N N . GLY A 14 ? 0.0421 0.0522 0.1297 -0.0055 -0.0139 0.0135 33 GLY A N 179 C CA . GLY A 14 ? 0.0641 0.0578 0.1549 -0.0045 -0.0106 -0.0138 33 GLY A CA 180 C C . GLY A 14 ? 0.0881 0.0438 0.1665 0.0051 -0.0118 0.0096 33 GLY A C 181 O O . GLY A 14 ? 0.0816 0.1133 0.1802 0.0277 -0.0172 0.0256 33 GLY A O 185 N N . LEU A 15 ? 0.1234 0.0779 0.1961 0.0131 -0.0113 0.0265 34 LEU A N 186 C CA . LEU A 15 ? 0.1582 0.2105 0.2253 0.0167 -0.0010 0.0343 34 LEU A CA 187 C C . LEU A 15 ? 0.1728 0.3647 0.2375 0.0258 0.0102 0.0677 34 LEU A C 188 O O . LEU A 15 ? 0.1780 0.3955 0.2466 0.0255 0.0209 0.0881 34 LEU A O 189 C CB . LEU A 15 ? 0.1766 0.3468 0.2449 0.0149 0.0040 0.0208 34 LEU A CB 190 C CG . LEU A 15 ? 0.1910 0.4111 0.2589 -0.0004 0.0034 0.0074 34 LEU A CG 191 C CD1 . LEU A 15 ? 0.1969 0.4451 0.2690 -0.0249 0.0091 -0.0022 34 LEU A CD1 192 C CD2 . LEU A 15 ? 0.1987 0.4265 0.2584 -0.0034 0.0004 -0.0059 34 LEU A CD2 193 O OXT . LEU A 15 ? 0.1811 0.4257 0.2414 0.0102 0.0135 0.0730 34 LEU A OXT 205 O O . HOH B . ? 0.3689 0.2005 0.1238 0.0596 -0.0006 -0.0491 101 HOH A O 206 O O . HOH B . ? 0.4072 0.3081 0.5937 -0.0867 -0.0509 0.0912 102 HOH A O 207 O O . HOH B . ? 0.5240 0.3259 0.3028 -0.0630 0.1996 0.0348 103 HOH A O 208 O O . HOH B . ? 0.2777 0.2329 0.4717 -0.0487 0.1728 -0.1137 104 HOH A O # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 PHE 1 20 20 PHE PHE A . n A 1 2 ALA 2 21 21 ALA ALA A . n A 1 3 GLU 3 22 22 GLU GLU A . n A 1 4 IAS 4 23 23 IAS ASI A . n A 1 5 VAL 5 24 24 VAL VAL A . n A 1 6 GLY 6 25 25 GLY GLY A . n A 1 7 SER 7 26 26 SER SER A . n A 1 8 ASN 8 27 27 ASN ASN A . n A 1 9 LYS 9 28 28 LYS LYS A . n A 1 10 GLY 10 29 29 GLY GLY A . n A 1 11 ALA 11 30 30 ALA ALA A . n A 1 12 ILE 12 31 31 ILE ILE A . n A 1 13 ILE 13 32 32 ILE ILE A . n A 1 14 GLY 14 33 33 GLY GLY A . n A 1 15 LEU 15 34 34 LEU LEU A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 101 3 HOH HOH A . B 2 HOH 2 102 4 HOH HOH A . B 2 HOH 3 103 1 HOH HOH A . B 2 HOH 4 104 2 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details decameric _pdbx_struct_assembly.oligomeric_count 10 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6,7,8,9,10 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 1_545 x,y-1,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 -4.8700000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 1_535 x,y-2,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 -9.7400000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 4 'crystal symmetry operation' 1_565 x,y+1,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 4.8700000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 5 'crystal symmetry operation' 1_575 x,y+2,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 9.7400000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 6 'crystal symmetry operation' 2_555 -x,y+1/2,-z -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2.4350000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 7 'crystal symmetry operation' 2_545 -x,y-1/2,-z -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 -2.4350000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 8 'crystal symmetry operation' 2_535 -x,y-3/2,-z -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 -7.3050000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 9 'crystal symmetry operation' 2_565 -x,y+3/2,-z -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 7.3050000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 10 'crystal symmetry operation' 2_575 -x,y+5/2,-z -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 12.1750000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2019-08-07 2 'Structure model' 1 1 2019-11-20 3 'Structure model' 1 2 2022-09-07 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Author supporting evidence' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' pdbx_audit_support 2 3 'Structure model' database_2 3 3 'Structure model' em_diffraction_shell 4 3 'Structure model' refine_hist # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_pdbx_audit_support.funding_organization' 2 3 'Structure model' '_database_2.pdbx_DOI' 3 3 'Structure model' '_database_2.pdbx_database_accession' 4 3 'Structure model' '_em_diffraction_shell.em_diffraction_stats_id' 5 3 'Structure model' '_em_diffraction_shell.id' 6 3 'Structure model' '_refine_hist.pdbx_refine_id' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data reduction' ? ? 'Wolfgang Kabsch' Wolfgang.Kabsch@mpimf-heidelberg.mpg.de ? ? ? ? ? http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/ ? XDS ? ? package . 1 ? 'data scaling' ? ? 'Wolfgang Kabsch' ? ? ? ? ? ? http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html ? XSCALE ? ? package . 2 ? refinement ? ? 'Paul D. Adams' PDAdams@lbl.gov ? ? ? ? C++ http://www.phenix-online.org/ ? PHENIX ? ? package . 3 ? 'data extraction' ? ? PDB deposit@deposit.rcsb.org 'Sep. 1, 2017' ? ? ? C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ ? PDB_EXTRACT ? ? package 3.24 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? SHELXDE ? ? ? . 5 # _em_3d_fitting.entry_id 6NB9 _em_3d_fitting.id 1 _em_3d_fitting.details ? _em_3d_fitting.overall_b_value 10.135 _em_3d_fitting.ref_protocol OTHER _em_3d_fitting.ref_space RECIPROCAL _em_3d_fitting.target_criteria 'maximum liklihood' _em_3d_fitting.method ? # _em_3d_reconstruction.entry_id 6NB9 _em_3d_reconstruction.id 1 _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.details ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.num_particles ? _em_3d_reconstruction.resolution ? _em_3d_reconstruction.resolution_method 'DIFFRACTION PATTERN/LAYERLINES' _em_3d_reconstruction.symmetry_type '3D CRYSTAL' _em_3d_reconstruction.method ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.magnification_calibration ? # _em_buffer.id 1 _em_buffer.details ? _em_buffer.pH 7.6 _em_buffer.specimen_id 1 _em_buffer.name ? # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.details ? _em_entity_assembly.name 'crystal of amyloid-beta residues 20-34 with L-isoaspartate at position 23' _em_entity_assembly.source 'MULTIPLE SOURCES' _em_entity_assembly.type COMPLEX _em_entity_assembly.entity_id_list 1 _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? # _em_image_scans.entry_id 6NB9 _em_image_scans.id 1 _em_image_scans.dimension_height 2048 _em_image_scans.dimension_width 2048 _em_image_scans.frames_per_image ? _em_image_scans.image_recording_id 1 _em_image_scans.sampling_size ? _em_image_scans.scanner_model ? _em_image_scans.used_frames_per_image ? _em_image_scans.citation_id ? _em_image_scans.number_digital_images ? _em_image_scans.od_range ? _em_image_scans.quant_bit_size ? _em_image_scans.details ? # _em_imaging.id 1 _em_imaging.entry_id 6NB9 _em_imaging.accelerating_voltage 200 _em_imaging.alignment_procedure BASIC _em_imaging.c2_aperture_diameter ? _em_imaging.calibrated_defocus_max ? _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_magnification ? _em_imaging.cryogen NITROGEN _em_imaging.details ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.microscope_model 'FEI TALOS ARCTICA' _em_imaging.mode DIFFRACTION _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_max ? _em_imaging.nominal_defocus_min ? _em_imaging.nominal_magnification ? _em_imaging.recording_temperature_maximum 100 _em_imaging.recording_temperature_minimum 100 _em_imaging.residual_tilt ? _em_imaging.specimen_holder_model 'FEI TITAN KRIOS AUTOGRID HOLDER' _em_imaging.specimen_id 1 _em_imaging.citation_id ? _em_imaging.date ? _em_imaging.temperature ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.astigmatism ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? _em_imaging.specimen_holder_type ? # _em_sample_support.id 1 _em_sample_support.specimen_id 1 _em_sample_support.details ? _em_sample_support.grid_material COPPER _em_sample_support.grid_mesh_size 300 _em_sample_support.grid_type 'Quantifoil R1.2/1.3' _em_sample_support.method ? _em_sample_support.film_material ? # _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.chamber_temperature 100 _em_vitrification.cryogen_name ETHANE _em_vitrification.details ? _em_vitrification.humidity ? _em_vitrification.instrument 'FEI VITROBOT MARK IV' _em_vitrification.entry_id 6NB9 _em_vitrification.citation_id ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 6NB9 _em_experiment.id 1 _em_experiment.aggregation_state '3D ARRAY' _em_experiment.reconstruction_method CRYSTALLOGRAPHY _em_experiment.entity_assembly_id 1 # _em_3d_crystal_entity.id 1 _em_3d_crystal_entity.image_processing_id 1 _em_3d_crystal_entity.angle_alpha 90.000 _em_3d_crystal_entity.angle_beta 101.897 _em_3d_crystal_entity.angle_gamma 90.000 _em_3d_crystal_entity.length_a 29.20 _em_3d_crystal_entity.length_b 4.87 _em_3d_crystal_entity.length_c 32.44 _em_3d_crystal_entity.space_group_name 'P 21' _em_3d_crystal_entity.space_group_num 4 # _em_buffer_component.buffer_id 1 _em_buffer_component.id 1 _em_buffer_component.concentration ? _em_buffer_component.concentration_units ? _em_buffer_component.formula ? _em_buffer_component.name water # _em_crystal_formation.id 1 _em_crystal_formation.specimen_id 1 _em_crystal_formation.atmosphere ? _em_crystal_formation.details ? _em_crystal_formation.instrument ? _em_crystal_formation.lipid_mixture ? _em_crystal_formation.lipid_protein_ratio ? _em_crystal_formation.temperature ? _em_crystal_formation.time ? _em_crystal_formation.time_unit ? # _em_ctf_correction.id 1 _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.type NONE _em_ctf_correction.details ? # _em_diffraction.id 1 _em_diffraction.camera_length 1050 _em_diffraction.imaging_id 1 _em_diffraction.tilt_angle_list ? # _em_diffraction_shell.id 1 _em_diffraction_shell.em_diffraction_stats_id 1 _em_diffraction_shell.fourier_space_coverage 41.2 _em_diffraction_shell.high_resolution 1.00 _em_diffraction_shell.low_resolution 1.05 _em_diffraction_shell.multiplicity 3.09 _em_diffraction_shell.num_structure_factors 315 _em_diffraction_shell.phase_residual 0.1 # _em_diffraction_stats.id 1 _em_diffraction_stats.details ? _em_diffraction_stats.image_processing_id 1 _em_diffraction_stats.fourier_space_coverage 82.7 _em_diffraction_stats.high_resolution 1.05 _em_diffraction_stats.num_intensities_measured 16529 _em_diffraction_stats.num_structure_factors 3946 _em_diffraction_stats.overall_phase_error 28.4 _em_diffraction_stats.overall_phase_residual 0.1 _em_diffraction_stats.phase_error_rejection_criteria 0.1 _em_diffraction_stats.r_merge 0.197 _em_diffraction_stats.r_sym 0.197 # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.experimental_flag NO _em_entity_assembly_molwt.units KILODALTONS/NANOMETER _em_entity_assembly_molwt.value 6.21 # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.avg_electron_dose_per_image 0.01 _em_image_recording.average_exposure_time 3 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'FEI CETA (4k x 4k)' _em_image_recording.num_diffraction_images 159 _em_image_recording.num_grids_imaged 2 _em_image_recording.num_real_images ? # _em_imaging_optics.id 1 _em_imaging_optics.imaging_id 1 _em_imaging_optics.chr_aberration_corrector ? _em_imaging_optics.energyfilter_lower ? _em_imaging_optics.energyfilter_name ? _em_imaging_optics.energyfilter_upper ? _em_imaging_optics.energyfilter_slit_width ? _em_imaging_optics.phase_plate ? _em_imaging_optics.sph_aberration_corrector ? # loop_ _em_software.id _em_software.category _em_software.details _em_software.name _em_software.version _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id 1 'IMAGE ACQUISITION' ? ? ? ? ? 1 2 MASKING ? ? ? ? ? ? 3 'CTF CORRECTION' ? ? ? 1 ? ? 4 'LAYERLINE INDEXING' ? ? ? ? ? ? 5 'DIFFRACTION INDEXING' ? ? ? ? ? ? 6 'MODEL FITTING' ? Coot 0.8.9.1 ? 1 ? 7 OTHER ? ? ? ? ? ? 8 'MOLECULAR REPLACEMENT' ? ? ? 1 ? ? 9 'LATTICE DISTORTION CORRECTION' ? ? ? 1 ? ? 10 'SYMMETRY DETERMINATION' ? ? ? 1 ? ? 11 'CRYSTALLOGRAPHY MERGING' ? ? ? 1 ? ? 12 RECONSTRUCTION ? ? ? 1 ? ? 13 'MODEL REFINEMENT' ? PHENIX 1.14-3260 ? 1 ? # _em_specimen.id 1 _em_specimen.experiment_id 1 _em_specimen.concentration 2.5 _em_specimen.details 'This sample is a crystal.' _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'National Institutes of Health/National Center for Research Resources (NIH/NCRR)' 'United States' 5T32GM008496 1 'National Science Foundation (NSF, United States)' 'United States' MCB-1714569 2 'National Institutes of Health/National Center for Research Resources (NIH/NCRR)' 'United States' GM-007185 3 'Howard Hughes Medical Institute (HHMI)' 'United States' ? 4 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support microscopy _pdbx_struct_assembly_auth_evidence.details ? #