data_6U89 # _entry.id 6U89 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6U89 pdb_00006u89 10.2210/pdb6u89/pdb WWPDB D_1000244156 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6U89 _pdbx_database_status.recvd_initial_deposition_date 2019-09-04 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Szostak, J.W.' 1 ? 'Zhang, W.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_id_ASTM NARHAD _citation.journal_id_CSD 0389 _citation.journal_id_ISSN 1362-4962 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 49 _citation.language ? _citation.page_first 646 _citation.page_last 656 _citation.title 'Structural interpretation of the effects of threo-nucleotides on nonenzymatic template-directed polymerization.' _citation.year 2021 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1093/nar/gkaa1215 _citation.pdbx_database_id_PubMed 33347562 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Zhang, W.' 1 ? primary 'Kim, S.C.' 2 ? primary 'Tam, C.P.' 3 ? primary 'Lelyveld, V.S.' 4 ? primary 'Bala, S.' 5 ? primary 'Chaput, J.C.' 6 ? primary 'Szostak, J.W.' 7 ? # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 120.00 _cell.angle_gamma_esd ? _cell.entry_id 6U89 _cell.details ? _cell.formula_units_Z ? _cell.length_a 51.892 _cell.length_a_esd ? _cell.length_b 51.892 _cell.length_b_esd ? _cell.length_c 37.891 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 12 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6U89 _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;RNA (5'-R(*(LCC)P*(TLN)P*(LCG)P*UP*AP*CP*A)-3') ; 2245.440 2 ? ? ? ? 2 non-polymer syn '2-azanyl-9-[(2~{R},3~{R},4~{S})-3-oxidanyl-4-[oxidanyl-bis(oxidanylidene)-$l^{6}-phosphanyl]oxy-oxolan-2-yl]-1~{H}-purin-6-one' 332.187 2 ? ? ? ? 3 water nat water 18.015 4 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(LCC)(TLN)(LCG)UACA' _entity_poly.pdbx_seq_one_letter_code_can NUGUACA _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 LCC n 1 2 TLN n 1 3 LCG n 1 4 U n 1 5 A n 1 6 C n 1 7 A n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 7 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 6U89 _struct_ref.pdbx_db_accession 6U89 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 6U89 A 1 ? 7 ? 6U89 1 ? 7 ? 1 7 2 1 6U89 B 1 ? 7 ? 6U89 1 ? 7 ? 1 7 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 HOH non-polymer . WATER ? 'H2 O' 18.015 LCC 'RNA linking' . '[(1R,3R,4R,7S)-7-HYDROXY-3-(5-METHYLCYTOSIN-1-YL)-2,5-DIOXABICYCLO[2.2.1]HEPT-1-YL]METHYL DIHYDROGEN PHOSPHATE' ? 'C11 H16 N3 O8 P' 349.234 LCG 'RNA linking' n '[(1R,3R,4R,7S)-7-HYDROXY-3-(GUANIN-9-YL)-2,5-DIOXABICYCLO[2.2.1]HEPT-1-YL]METHYL DIHYDROGEN PHOSPHATE' ? 'C11 H14 N5 O8 P' 375.231 TG 'RNA linking' n '2-azanyl-9-[(2~{R},3~{R},4~{S})-3-oxidanyl-4-[oxidanyl-bis(oxidanylidene)-$l^{6}-phosphanyl]oxy-oxolan-2-yl]-1~{H}-purin-6-one' ? 'C9 H11 N5 O7 P' 332.187 TLN 'RNA linking' n '[(1R,3R,4R,7S)-7-HYDROXY-3-(THYMIN-1-YL)-2,5-DIOXABICYCLO[2.2.1]HEPT-1-YL]METHYL DIHYDROGEN PHOSPHATE' ? 'C11 H15 N2 O9 P' 350.219 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6U89 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 3.28 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 62.49 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 5.6 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '25 % v/v Polyethylene glycol 400, 100 mM tri-Sodium citrate; pH 5.6, 130 mM Sodium chloride, 60 mM Magnesium chloride' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 99 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'MAR CCD 130 mm' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2017-06-09 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'ALS BEAMLINE 8.2.2' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 8.2.2 _diffrn_source.pdbx_synchrotron_site ALS # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 6U89 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.36 _reflns.d_resolution_low 50 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 2444 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.9 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 4.5 _reflns.pdbx_Rmerge_I_obs 0.163 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 10.67 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 1.00 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.185 _reflns.pdbx_Rpim_I_all 0.086 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.933 _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 2.36 _reflns_shell.d_res_low 2.44 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 1.89 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 228 _reflns_shell.percent_possible_all 99.6 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.537 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 3.9 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared 0.549 _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all 0.621 _reflns_shell.pdbx_Rpim_I_all 0.307 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.753 _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] 0.03 _refine.aniso_B[1][2] 0.02 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][2] 0.03 _refine.aniso_B[2][3] 0.00 _refine.aniso_B[3][3] -0.10 _refine.B_iso_max ? _refine.B_iso_mean 36.17 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6U89 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.36 _refine.ls_d_res_low 44.96 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 2331 _refine.ls_number_reflns_R_free 113 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.96 _refine.ls_percent_reflns_R_free 4.6 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.191 _refine.ls_R_factor_R_free 0.274 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.188 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 5HBW _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details random _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 298 _refine_hist.pdbx_number_atoms_ligand 44 _refine_hist.number_atoms_solvent 4 _refine_hist.number_atoms_total 346 _refine_hist.d_res_high 2.36 _refine_hist.d_res_low 44.96 # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 2.36 _refine_ls_shell.d_res_low 2.43 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 7 _refine_ls_shell.number_reflns_R_work 155 _refine_ls_shell.percent_reflns_obs 99.39 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.461 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.298 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_total_number_of_bins_used ? _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 6U89 _struct.title 'RNA duplex, bound with TNA monomer' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6U89 _struct_keywords.text RNA _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 3 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A LCC 1 "O3'" ? ? ? 1_555 A TLN 2 P ? ? A LCC 1 A TLN 2 1_555 ? ? ? ? ? ? ? 1.613 ? ? covale2 covale both ? A TLN 2 "O3'" ? ? ? 1_555 A LCG 3 P ? ? A TLN 2 A LCG 3 1_555 ? ? ? ? ? ? ? 1.632 ? ? covale3 covale both ? A LCG 3 "O3'" ? ? ? 1_555 A U 4 P ? ? A LCG 3 A U 4 1_555 ? ? ? ? ? ? ? 1.611 ? ? covale4 covale both ? B LCC 1 "O3'" ? ? ? 1_555 B TLN 2 P ? ? B LCC 1 B TLN 2 1_555 ? ? ? ? ? ? ? 1.624 ? ? covale5 covale both ? B TLN 2 "O3'" ? ? ? 1_555 B LCG 3 P ? ? B TLN 2 B LCG 3 1_555 ? ? ? ? ? ? ? 1.628 ? ? covale6 covale both ? B LCG 3 "O3'" ? ? ? 1_555 B U 4 P ? ? B LCG 3 B U 4 1_555 ? ? ? ? ? ? ? 1.598 ? ? hydrog1 hydrog ? ? A TLN 2 N3 ? ? ? 1_555 B A 7 N1 ? ? A TLN 2 B A 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A TLN 2 O4 ? ? ? 1_555 B A 7 N6 ? ? A TLN 2 B A 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A LCG 3 N1 ? ? ? 1_555 B C 6 N3 ? ? A LCG 3 B C 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A LCG 3 N2 ? ? ? 1_555 B C 6 O2 ? ? A LCG 3 B C 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A LCG 3 O6 ? ? ? 1_555 B C 6 N4 ? ? A LCG 3 B C 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A U 4 N3 ? ? ? 1_555 B A 5 N1 ? ? A U 4 B A 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A U 4 O4 ? ? ? 1_555 B A 5 N6 ? ? A U 4 B A 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A A 5 N1 ? ? ? 1_555 B U 4 N3 ? ? A A 5 B U 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A A 5 N6 ? ? ? 1_555 B U 4 O4 ? ? A A 5 B U 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A C 6 N3 ? ? ? 1_555 B LCG 3 N1 ? ? A C 6 B LCG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A C 6 N4 ? ? ? 1_555 B LCG 3 O6 ? ? A C 6 B LCG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A C 6 O2 ? ? ? 1_555 B LCG 3 N2 ? ? A C 6 B LCG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A A 7 N1 ? ? ? 1_555 B TLN 2 N3 ? ? A A 7 B TLN 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A A 7 N6 ? ? ? 1_555 B TLN 2 O4 ? ? A A 7 B TLN 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A TG 101 ? 6 'binding site for residue TG A 101' AC2 Software A TG 102 ? 5 'binding site for residue TG A 102' AC3 Software A LCC 1 ? 8 'binding site for residues LCC A 1 and TLN A 2' AC4 Software A TLN 2 ? 11 'binding site for residues TLN A 2 and LCG A 3' AC5 Software B LCC 1 ? 5 'binding site for residues LCC B 1 and TLN B 2' AC6 Software B TLN 2 ? 6 'binding site for residues TLN B 2 and LCG B 3' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 LCC A 1 ? LCC A 1 . ? 4_764 ? 2 AC1 6 A A 7 ? A A 7 . ? 1_555 ? 3 AC1 6 LCC B 1 ? LCC B 1 . ? 1_555 ? 4 AC1 6 TLN B 2 ? TLN B 2 . ? 1_555 ? 5 AC1 6 C B 6 ? C B 6 . ? 6_654 ? 6 AC1 6 A B 7 ? A B 7 . ? 6_654 ? 7 AC2 5 LCC A 1 ? LCC A 1 . ? 1_555 ? 8 AC2 5 TLN A 2 ? TLN A 2 . ? 1_555 ? 9 AC2 5 LCC B 1 ? LCC B 1 . ? 4_765 ? 10 AC2 5 A B 7 ? A B 7 . ? 3_665 ? 11 AC2 5 A B 7 ? A B 7 . ? 1_555 ? 12 AC3 8 LCG A 3 ? LCG A 3 . ? 1_555 ? 13 AC3 8 LCG A 3 ? LCG A 3 . ? 3_665 ? 14 AC3 8 TG C . ? TG A 101 . ? 4_765 ? 15 AC3 8 TG D . ? TG A 102 . ? 1_555 ? 16 AC3 8 LCC B 1 ? LCC B 1 . ? 4_765 ? 17 AC3 8 C B 6 ? C B 6 . ? 3_665 ? 18 AC3 8 A B 7 ? A B 7 . ? 1_555 ? 19 AC3 8 A B 7 ? A B 7 . ? 3_665 ? 20 AC4 11 LCC A 1 ? LCC A 1 . ? 1_555 ? 21 AC4 11 U A 4 ? U A 4 . ? 3_665 ? 22 AC4 11 U A 4 ? U A 4 . ? 1_555 ? 23 AC4 11 TG D . ? TG A 102 . ? 1_555 ? 24 AC4 11 HOH E . ? HOH A 202 . ? 1_555 ? 25 AC4 11 HOH E . ? HOH A 203 . ? 1_555 ? 26 AC4 11 A B 5 ? A B 5 . ? 1_555 ? 27 AC4 11 C B 6 ? C B 6 . ? 1_555 ? 28 AC4 11 C B 6 ? C B 6 . ? 3_665 ? 29 AC4 11 A B 7 ? A B 7 . ? 1_555 ? 30 AC4 11 A B 7 ? A B 7 . ? 3_665 ? 31 AC5 5 LCC A 1 ? LCC A 1 . ? 4_764 ? 32 AC5 5 A A 7 ? A A 7 . ? 1_555 ? 33 AC5 5 TG C . ? TG A 101 . ? 1_555 ? 34 AC5 5 TG D . ? TG A 102 . ? 4_764 ? 35 AC5 5 LCG B 3 ? LCG B 3 . ? 1_555 ? 36 AC6 6 A A 5 ? A A 5 . ? 1_555 ? 37 AC6 6 C A 6 ? C A 6 . ? 1_555 ? 38 AC6 6 A A 7 ? A A 7 . ? 1_555 ? 39 AC6 6 TG C . ? TG A 101 . ? 1_555 ? 40 AC6 6 LCC B 1 ? LCC B 1 . ? 1_555 ? 41 AC6 6 U B 4 ? U B 4 . ? 1_555 ? # _database_PDB_matrix.entry_id 6U89 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 6U89 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.019271 _atom_sites.fract_transf_matrix[1][2] 0.011126 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.022252 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.026391 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O P # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_alt_id _atom_site.label_comp_id _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.label_seq_id _atom_site.pdbx_PDB_ins_code _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_seq_id _atom_site.auth_comp_id _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.pdbx_PDB_model_num HETATM 1 O "O5'" . LCC A 1 1 ? 41.359 16.895 14.794 1.00 38.42 ? 1 LCC A "O5'" 1 HETATM 2 C "C5'" . LCC A 1 1 ? 41.155 15.585 15.312 1.00 35.97 ? 1 LCC A "C5'" 1 HETATM 3 C "C4'" . LCC A 1 1 ? 39.685 15.604 15.593 1.00 36.84 ? 1 LCC A "C4'" 1 HETATM 4 O "O4'" . LCC A 1 1 ? 39.326 16.419 16.710 1.00 33.69 ? 1 LCC A "O4'" 1 HETATM 5 C "C1'" . LCC A 1 1 ? 37.935 16.374 16.607 1.00 34.61 ? 1 LCC A "C1'" 1 HETATM 6 N N1 . LCC A 1 1 ? 37.539 17.755 16.654 1.00 34.31 ? 1 LCC A N1 1 HETATM 7 C C6 . LCC A 1 1 ? 38.524 18.765 16.542 1.00 32.63 ? 1 LCC A C6 1 HETATM 8 C C5 . LCC A 1 1 ? 38.063 20.076 16.638 1.00 36.18 ? 1 LCC A C5 1 HETATM 9 C C5M . LCC A 1 1 ? 38.990 21.129 16.498 1.00 33.75 ? 1 LCC A C5M 1 HETATM 10 C C4 . LCC A 1 1 ? 36.671 20.279 16.845 1.00 34.14 ? 1 LCC A C4 1 HETATM 11 N N4 . LCC A 1 1 ? 36.191 21.494 16.943 1.00 31.86 ? 1 LCC A N4 1 HETATM 12 N N3 . LCC A 1 1 ? 35.789 19.282 16.935 1.00 34.32 ? 1 LCC A N3 1 HETATM 13 C C2 . LCC A 1 1 ? 36.225 18.036 16.869 1.00 34.12 ? 1 LCC A C2 1 HETATM 14 O O2 . LCC A 1 1 ? 35.365 17.177 16.982 1.00 34.83 ? 1 LCC A O2 1 HETATM 15 C "C3'" . LCC A 1 1 ? 38.797 16.186 14.522 1.00 36.89 ? 1 LCC A "C3'" 1 HETATM 16 C "C2'" . LCC A 1 1 ? 37.629 15.724 15.300 1.00 34.77 ? 1 LCC A "C2'" 1 HETATM 17 O "O2'" . LCC A 1 1 ? 37.833 14.281 15.383 1.00 32.64 ? 1 LCC A "O2'" 1 HETATM 18 O "O3'" . LCC A 1 1 ? 38.875 15.495 13.276 1.00 40.29 ? 1 LCC A "O3'" 1 HETATM 19 C "C6'" . LCC A 1 1 ? 39.213 14.141 15.765 1.00 35.64 ? 1 LCC A "C6'" 1 HETATM 20 P P . TLN A 1 2 ? 38.271 16.125 11.919 1.00 36.41 ? 2 TLN A P 1 HETATM 21 O OP1 . TLN A 1 2 ? 38.755 15.289 10.820 1.00 37.41 ? 2 TLN A OP1 1 HETATM 22 O OP2 . TLN A 1 2 ? 38.485 17.577 11.959 1.00 32.88 ? 2 TLN A OP2 1 HETATM 23 O "O5'" . TLN A 1 2 ? 36.722 15.768 11.998 1.00 36.84 ? 2 TLN A "O5'" 1 HETATM 24 C "C5'" . TLN A 1 2 ? 36.131 14.442 11.997 1.00 37.17 ? 2 TLN A "C5'" 1 HETATM 25 C "C4'" . TLN A 1 2 ? 34.666 14.612 12.362 1.00 34.96 ? 2 TLN A "C4'" 1 HETATM 26 O "O4'" . TLN A 1 2 ? 34.454 15.445 13.545 1.00 31.81 ? 2 TLN A "O4'" 1 HETATM 27 C "C1'" . TLN A 1 2 ? 33.107 15.841 13.430 1.00 35.32 ? 2 TLN A "C1'" 1 HETATM 28 N N1 . TLN A 1 2 ? 33.125 17.322 13.585 1.00 37.92 ? 2 TLN A N1 1 HETATM 29 C C6 . TLN A 1 2 ? 34.333 18.044 13.495 1.00 39.80 ? 2 TLN A C6 1 HETATM 30 C C5 . TLN A 1 2 ? 34.372 19.410 13.719 1.00 38.35 ? 2 TLN A C5 1 HETATM 31 C C5M . TLN A 1 2 ? 35.618 20.054 13.629 1.00 36.62 ? 2 TLN A C5M 1 HETATM 32 C C4 . TLN A 1 2 ? 33.169 20.056 14.040 1.00 35.86 ? 2 TLN A C4 1 HETATM 33 O O4 . TLN A 1 2 ? 33.081 21.274 14.254 1.00 35.92 ? 2 TLN A O4 1 HETATM 34 N N3 . TLN A 1 2 ? 32.020 19.304 14.149 1.00 34.20 ? 2 TLN A N3 1 HETATM 35 C C2 . TLN A 1 2 ? 32.006 17.979 13.910 1.00 35.38 ? 2 TLN A C2 1 HETATM 36 O O2 . TLN A 1 2 ? 30.928 17.421 13.969 1.00 38.73 ? 2 TLN A O2 1 HETATM 37 C "C3'" . TLN A 1 2 ? 33.885 15.287 11.341 1.00 37.16 ? 2 TLN A "C3'" 1 HETATM 38 C "C2'" . TLN A 1 2 ? 32.646 15.176 12.152 1.00 35.82 ? 2 TLN A "C2'" 1 HETATM 39 O "O2'" . TLN A 1 2 ? 32.592 13.788 12.397 1.00 35.73 ? 2 TLN A "O2'" 1 HETATM 40 O "O3'" . TLN A 1 2 ? 33.817 14.579 10.076 1.00 38.31 ? 2 TLN A "O3'" 1 HETATM 41 C "C6'" . TLN A 1 2 ? 33.954 13.337 12.601 1.00 35.67 ? 2 TLN A "C6'" 1 HETATM 42 P P . LCG A 1 3 ? 33.750 15.363 8.646 1.00 36.98 ? 3 LCG A P 1 HETATM 43 O OP1 . LCG A 1 3 ? 33.847 14.348 7.565 1.00 36.16 ? 3 LCG A OP1 1 HETATM 44 O "O5'" . LCG A 1 3 ? 32.255 15.908 8.646 1.00 35.92 ? 3 LCG A "O5'" 1 HETATM 45 C "C5'" . LCG A 1 3 ? 31.141 15.040 8.762 1.00 34.20 ? 3 LCG A "C5'" 1 HETATM 46 C "C3'" . LCG A 1 3 ? 29.878 17.125 8.113 1.00 32.46 ? 3 LCG A "C3'" 1 HETATM 47 C "C6'" . LCG A 1 3 ? 28.613 15.320 8.934 1.00 33.40 ? 3 LCG A "C6'" 1 HETATM 48 N N9 . LCG A 1 3 ? 30.084 18.904 10.629 1.00 32.61 ? 3 LCG A N9 1 HETATM 49 C C8 . LCG A 1 3 ? 31.393 19.111 10.617 1.00 35.03 ? 3 LCG A C8 1 HETATM 50 C C4 . LCG A 1 3 ? 29.464 19.962 11.120 1.00 32.02 ? 3 LCG A C4 1 HETATM 51 N N7 . LCG A 1 3 ? 31.636 20.344 11.038 1.00 35.97 ? 3 LCG A N7 1 HETATM 52 C C5 . LCG A 1 3 ? 30.428 20.860 11.377 1.00 34.07 ? 3 LCG A C5 1 HETATM 53 C C6 . LCG A 1 3 ? 30.069 22.061 11.860 1.00 32.51 ? 3 LCG A C6 1 HETATM 54 C "C2'" . LCG A 1 3 ? 28.741 17.626 8.891 1.00 32.97 ? 3 LCG A "C2'" 1 HETATM 55 O O6 . LCG A 1 3 ? 30.906 22.933 12.091 1.00 31.35 ? 3 LCG A O6 1 HETATM 56 C "C4'" . LCG A 1 3 ? 29.976 15.980 9.031 1.00 33.25 ? 3 LCG A "C4'" 1 HETATM 57 C "C1'" . LCG A 1 3 ? 29.302 17.694 10.303 1.00 33.81 ? 3 LCG A "C1'" 1 HETATM 58 C C2 . LCG A 1 3 ? 27.747 21.374 11.808 1.00 29.81 ? 3 LCG A C2 1 HETATM 59 N N1 . LCG A 1 3 ? 28.711 22.333 12.087 1.00 31.94 ? 3 LCG A N1 1 HETATM 60 O "O4'" . LCG A 1 3 ? 30.098 16.555 10.359 1.00 33.43 ? 3 LCG A "O4'" 1 HETATM 61 O OP2 . LCG A 1 3 ? 34.703 16.501 8.677 1.00 36.45 ? 3 LCG A OP2 1 HETATM 62 N N2 . LCG A 1 3 ? 26.475 21.638 12.044 1.00 29.37 ? 3 LCG A N2 1 HETATM 63 N N3 . LCG A 1 3 ? 28.145 20.200 11.355 1.00 28.48 ? 3 LCG A N3 1 HETATM 64 O "O2'" . LCG A 1 3 ? 27.827 16.546 8.808 1.00 32.06 ? 3 LCG A "O2'" 1 HETATM 65 O "O3'" . LCG A 1 3 ? 29.453 16.788 6.779 1.00 30.39 ? 3 LCG A "O3'" 1 ATOM 66 P P . U A 1 4 ? 29.815 17.725 5.520 1.00 33.39 ? 4 U A P 1 ATOM 67 O OP1 . U A 1 4 ? 29.853 16.880 4.317 1.00 40.36 ? 4 U A OP1 1 ATOM 68 O OP2 . U A 1 4 ? 30.945 18.562 5.843 1.00 34.22 ? 4 U A OP2 1 ATOM 69 O "O5'" . U A 1 4 ? 28.592 18.732 5.445 1.00 37.26 ? 4 U A "O5'" 1 ATOM 70 C "C5'" . U A 1 4 ? 27.224 18.277 5.513 1.00 36.52 ? 4 U A "C5'" 1 ATOM 71 C "C4'" . U A 1 4 ? 26.294 19.417 5.855 1.00 32.44 ? 4 U A "C4'" 1 ATOM 72 O "O4'" . U A 1 4 ? 26.458 19.753 7.251 1.00 31.77 ? 4 U A "O4'" 1 ATOM 73 C "C3'" . U A 1 4 ? 26.504 20.747 5.159 1.00 33.35 ? 4 U A "C3'" 1 ATOM 74 O "O3'" . U A 1 4 ? 25.894 20.775 3.878 1.00 36.69 ? 4 U A "O3'" 1 ATOM 75 C "C2'" . U A 1 4 ? 25.744 21.657 6.096 1.00 34.29 ? 4 U A "C2'" 1 ATOM 76 O "O2'" . U A 1 4 ? 24.336 21.457 5.997 1.00 35.56 ? 4 U A "O2'" 1 ATOM 77 C "C1'" . U A 1 4 ? 26.250 21.141 7.435 1.00 32.81 ? 4 U A "C1'" 1 ATOM 78 N N1 . U A 1 4 ? 27.513 21.764 7.863 1.00 32.02 ? 4 U A N1 1 ATOM 79 C C2 . U A 1 4 ? 27.423 22.995 8.463 1.00 35.32 ? 4 U A C2 1 ATOM 80 O O2 . U A 1 4 ? 26.357 23.575 8.632 1.00 34.86 ? 4 U A O2 1 ATOM 81 N N3 . U A 1 4 ? 28.627 23.537 8.841 1.00 36.38 ? 4 U A N3 1 ATOM 82 C C4 . U A 1 4 ? 29.880 22.990 8.673 1.00 35.31 ? 4 U A C4 1 ATOM 83 O O4 . U A 1 4 ? 30.876 23.596 9.092 1.00 34.14 ? 4 U A O4 1 ATOM 84 C C5 . U A 1 4 ? 29.881 21.701 8.064 1.00 31.24 ? 4 U A C5 1 ATOM 85 C C6 . U A 1 4 ? 28.728 21.148 7.688 1.00 31.02 ? 4 U A C6 1 ATOM 86 P P . A A 1 5 ? 26.364 21.830 2.740 1.00 38.08 ? 5 A A P 1 ATOM 87 O OP1 . A A 1 5 ? 25.601 21.536 1.526 1.00 39.20 ? 5 A A OP1 1 ATOM 88 O OP2 . A A 1 5 ? 27.863 21.860 2.710 1.00 37.47 ? 5 A A OP2 1 ATOM 89 O "O5'" . A A 1 5 ? 25.864 23.230 3.283 1.00 35.53 ? 5 A A "O5'" 1 ATOM 90 C "C5'" . A A 1 5 ? 24.485 23.592 3.259 1.00 38.48 ? 5 A A "C5'" 1 ATOM 91 C "C4'" . A A 1 5 ? 24.342 24.922 3.950 1.00 39.93 ? 5 A A "C4'" 1 ATOM 92 O "O4'" . A A 1 5 ? 24.927 24.849 5.277 1.00 38.44 ? 5 A A "O4'" 1 ATOM 93 C "C3'" . A A 1 5 ? 25.091 26.083 3.310 1.00 38.00 ? 5 A A "C3'" 1 ATOM 94 O "O3'" . A A 1 5 ? 24.394 26.621 2.204 1.00 38.52 ? 5 A A "O3'" 1 ATOM 95 C "C2'" . A A 1 5 ? 25.150 27.053 4.475 1.00 40.52 ? 5 A A "C2'" 1 ATOM 96 O "O2'" . A A 1 5 ? 23.940 27.727 4.710 1.00 42.67 ? 5 A A "O2'" 1 ATOM 97 C "C1'" . A A 1 5 ? 25.485 26.105 5.619 1.00 34.98 ? 5 A A "C1'" 1 ATOM 98 N N9 . A A 1 5 ? 26.914 25.915 5.844 1.00 35.09 ? 5 A A N9 1 ATOM 99 C C8 . A A 1 5 ? 27.678 24.834 5.480 1.00 33.74 ? 5 A A C8 1 ATOM 100 N N7 . A A 1 5 ? 28.924 24.908 5.881 1.00 34.57 ? 5 A A N7 1 ATOM 101 C C5 . A A 1 5 ? 28.993 26.136 6.529 1.00 32.82 ? 5 A A C5 1 ATOM 102 C C6 . A A 1 5 ? 30.046 26.808 7.163 1.00 33.00 ? 5 A A C6 1 ATOM 103 N N6 . A A 1 5 ? 31.280 26.323 7.249 1.00 35.99 ? 5 A A N6 1 ATOM 104 N N1 . A A 1 5 ? 29.783 28.003 7.729 1.00 29.24 ? 5 A A N1 1 ATOM 105 C C2 . A A 1 5 ? 28.546 28.489 7.637 1.00 31.80 ? 5 A A C2 1 ATOM 106 N N3 . A A 1 5 ? 27.463 27.943 7.085 1.00 33.61 ? 5 A A N3 1 ATOM 107 C C4 . A A 1 5 ? 27.760 26.757 6.531 1.00 34.31 ? 5 A A C4 1 ATOM 108 P P . C A 1 6 ? 25.173 27.138 0.909 1.00 42.28 ? 6 C A P 1 ATOM 109 O OP1 . C A 1 6 ? 24.153 27.388 -0.119 1.00 45.59 ? 6 C A OP1 1 ATOM 110 O OP2 . C A 1 6 ? 26.270 26.205 0.565 1.00 39.90 ? 6 C A OP2 1 ATOM 111 O "O5'" . C A 1 6 ? 25.796 28.499 1.436 1.00 41.63 ? 6 C A "O5'" 1 ATOM 112 C "C5'" . C A 1 6 ? 24.931 29.515 1.950 1.00 43.65 ? 6 C A "C5'" 1 ATOM 113 C "C4'" . C A 1 6 ? 25.702 30.595 2.671 1.00 43.83 ? 6 C A "C4'" 1 ATOM 114 O "O4'" . C A 1 6 ? 26.326 30.052 3.854 1.00 41.81 ? 6 C A "O4'" 1 ATOM 115 C "C3'" . C A 1 6 ? 26.855 31.247 1.925 1.00 44.86 ? 6 C A "C3'" 1 ATOM 116 O "O3'" . C A 1 6 ? 26.455 32.177 0.909 1.00 45.54 ? 6 C A "O3'" 1 ATOM 117 C "C2'" . C A 1 6 ? 27.635 31.862 3.073 1.00 42.49 ? 6 C A "C2'" 1 ATOM 118 O "O2'" . C A 1 6 ? 26.971 32.985 3.589 1.00 43.23 ? 6 C A "O2'" 1 ATOM 119 C "C1'" . C A 1 6 ? 27.535 30.752 4.110 1.00 44.51 ? 6 C A "C1'" 1 ATOM 120 N N1 . C A 1 6 ? 28.642 29.793 4.052 1.00 43.26 ? 6 C A N1 1 ATOM 121 C C2 . C A 1 6 ? 29.834 30.094 4.719 1.00 40.23 ? 6 C A C2 1 ATOM 122 O O2 . C A 1 6 ? 29.935 31.173 5.312 1.00 42.00 ? 6 C A O2 1 ATOM 123 N N3 . C A 1 6 ? 30.843 29.199 4.701 1.00 38.45 ? 6 C A N3 1 ATOM 124 C C4 . C A 1 6 ? 30.703 28.051 4.038 1.00 37.23 ? 6 C A C4 1 ATOM 125 N N4 . C A 1 6 ? 31.727 27.205 4.041 1.00 39.14 ? 6 C A N4 1 ATOM 126 C C5 . C A 1 6 ? 29.503 27.719 3.347 1.00 36.83 ? 6 C A C5 1 ATOM 127 C C6 . C A 1 6 ? 28.499 28.599 3.399 1.00 39.99 ? 6 C A C6 1 ATOM 128 P P . A A 1 7 ? 27.329 32.321 -0.447 1.00 44.56 ? 7 A A P 1 ATOM 129 O OP1 . A A 1 7 ? 26.559 33.153 -1.394 1.00 52.44 ? 7 A A OP1 1 ATOM 130 O OP2 . A A 1 7 ? 27.775 30.993 -0.891 1.00 45.89 ? 7 A A OP2 1 ATOM 131 O "O5'" . A A 1 7 ? 28.623 33.061 0.088 1.00 38.97 ? 7 A A "O5'" 1 ATOM 132 C "C5'" . A A 1 7 ? 28.472 34.352 0.676 1.00 41.62 ? 7 A A "C5'" 1 ATOM 133 C "C4'" . A A 1 7 ? 29.798 34.841 1.187 1.00 43.65 ? 7 A A "C4'" 1 ATOM 134 O "O4'" . A A 1 7 ? 30.202 34.028 2.315 1.00 43.88 ? 7 A A "O4'" 1 ATOM 135 C "C3'" . A A 1 7 ? 30.990 34.758 0.241 1.00 41.45 ? 7 A A "C3'" 1 ATOM 136 O "O3'" . A A 1 7 ? 31.075 35.852 -0.646 1.00 45.26 ? 7 A A "O3'" 1 ATOM 137 C "C2'" . A A 1 7 ? 32.142 34.818 1.223 1.00 43.22 ? 7 A A "C2'" 1 ATOM 138 O "O2'" . A A 1 7 ? 32.377 36.096 1.774 1.00 48.46 ? 7 A A "O2'" 1 ATOM 139 C "C1'" . A A 1 7 ? 31.613 33.919 2.329 1.00 41.04 ? 7 A A "C1'" 1 ATOM 140 N N9 . A A 1 7 ? 31.958 32.523 2.141 1.00 38.54 ? 7 A A N9 1 ATOM 141 C C8 . A A 1 7 ? 31.240 31.497 1.574 1.00 38.30 ? 7 A A C8 1 ATOM 142 N N7 . A A 1 7 ? 31.853 30.339 1.612 1.00 36.81 ? 7 A A N7 1 ATOM 143 C C5 . A A 1 7 ? 33.040 30.617 2.277 1.00 34.77 ? 7 A A C5 1 ATOM 144 C C6 . A A 1 7 ? 34.121 29.815 2.644 1.00 31.90 ? 7 A A C6 1 ATOM 145 N N6 . A A 1 7 ? 34.188 28.507 2.395 1.00 33.36 ? 7 A A N6 1 ATOM 146 N N1 . A A 1 7 ? 35.155 30.406 3.277 1.00 31.92 ? 7 A A N1 1 ATOM 147 C C2 . A A 1 7 ? 35.108 31.724 3.494 1.00 33.57 ? 7 A A C2 1 ATOM 148 N N3 . A A 1 7 ? 34.136 32.582 3.220 1.00 39.51 ? 7 A A N3 1 ATOM 149 C C4 . A A 1 7 ? 33.114 31.956 2.612 1.00 39.62 ? 7 A A C4 1 HETATM 150 O "O5'" . LCC B 1 1 ? 45.315 23.500 2.894 1.00 41.27 ? 1 LCC B "O5'" 1 HETATM 151 C "C5'" . LCC B 1 1 ? 46.247 24.564 2.803 1.00 41.68 ? 1 LCC B "C5'" 1 HETATM 152 C "C4'" . LCC B 1 1 ? 45.388 25.805 2.634 1.00 40.45 ? 1 LCC B "C4'" 1 HETATM 153 O "O4'" . LCC B 1 1 ? 44.609 25.821 1.404 1.00 39.97 ? 1 LCC B "O4'" 1 HETATM 154 C "C1'" . LCC B 1 1 ? 43.675 26.867 1.641 1.00 37.38 ? 1 LCC B "C1'" 1 HETATM 155 N N1 . LCC B 1 1 ? 42.340 26.332 1.487 1.00 36.79 ? 1 LCC B N1 1 HETATM 156 C C6 . LCC B 1 1 ? 42.176 24.918 1.430 1.00 39.59 ? 1 LCC B C6 1 HETATM 157 C C5 . LCC B 1 1 ? 40.888 24.417 1.277 1.00 39.93 ? 1 LCC B C5 1 HETATM 158 C C5M . LCC B 1 1 ? 40.644 23.040 1.219 1.00 39.81 ? 1 LCC B C5M 1 HETATM 159 C C4 . LCC B 1 1 ? 39.876 25.360 1.190 1.00 40.42 ? 1 LCC B C4 1 HETATM 160 N N4 . LCC B 1 1 ? 38.640 24.949 1.031 1.00 44.27 ? 1 LCC B N4 1 HETATM 161 N N3 . LCC B 1 1 ? 40.092 26.657 1.257 1.00 37.93 ? 1 LCC B N3 1 HETATM 162 C C2 . LCC B 1 1 ? 41.291 27.181 1.393 1.00 39.07 ? 1 LCC B C2 1 HETATM 163 O O2 . LCC B 1 1 ? 41.358 28.432 1.416 1.00 44.19 ? 1 LCC B O2 1 HETATM 164 C "C3'" . LCC B 1 1 ? 44.371 26.030 3.716 1.00 40.48 ? 1 LCC B "C3'" 1 HETATM 165 C "C2'" . LCC B 1 1 ? 43.934 27.303 3.057 1.00 37.60 ? 1 LCC B "C2'" 1 HETATM 166 O "O2'" . LCC B 1 1 ? 45.148 28.029 3.043 1.00 36.97 ? 1 LCC B "O2'" 1 HETATM 167 O "O3'" . LCC B 1 1 ? 44.945 26.314 5.030 1.00 42.82 ? 1 LCC B "O3'" 1 HETATM 168 C "C6'" . LCC B 1 1 ? 46.210 27.056 2.661 1.00 38.27 ? 1 LCC B "C6'" 1 HETATM 169 P P . TLN B 1 2 ? 43.993 26.370 6.344 1.00 41.97 ? 2 TLN B P 1 HETATM 170 O OP1 . TLN B 1 2 ? 44.823 26.689 7.492 1.00 38.35 ? 2 TLN B OP1 1 HETATM 171 O OP2 . TLN B 1 2 ? 43.152 25.155 6.304 1.00 45.73 ? 2 TLN B OP2 1 HETATM 172 O "O5'" . TLN B 1 2 ? 43.183 27.696 6.171 1.00 38.45 ? 2 TLN B "O5'" 1 HETATM 173 C "C5'" . TLN B 1 2 ? 43.865 28.952 6.237 1.00 39.07 ? 2 TLN B "C5'" 1 HETATM 174 C "C4'" . TLN B 1 2 ? 42.791 29.936 5.932 1.00 38.89 ? 2 TLN B "C4'" 1 HETATM 175 O "O4'" . TLN B 1 2 ? 42.105 29.676 4.756 1.00 39.68 ? 2 TLN B "O4'" 1 HETATM 176 C "C1'" . TLN B 1 2 ? 40.885 30.454 4.935 1.00 40.49 ? 2 TLN B "C1'" 1 HETATM 177 N N1 . TLN B 1 2 ? 39.766 29.559 4.682 1.00 40.83 ? 2 TLN B N1 1 HETATM 178 C C6 . TLN B 1 2 ? 39.971 28.144 4.707 1.00 39.91 ? 2 TLN B C6 1 HETATM 179 C C5 . TLN B 1 2 ? 38.928 27.296 4.381 1.00 37.74 ? 2 TLN B C5 1 HETATM 180 C C5M . TLN B 1 2 ? 39.162 25.903 4.454 1.00 36.90 ? 2 TLN B C5M 1 HETATM 181 C C4 . TLN B 1 2 ? 37.713 27.884 4.023 1.00 36.09 ? 2 TLN B C4 1 HETATM 182 O O4 . TLN B 1 2 ? 36.734 27.229 3.712 1.00 38.76 ? 2 TLN B O4 1 HETATM 183 N N3 . TLN B 1 2 ? 37.558 29.264 3.964 1.00 38.47 ? 2 TLN B N3 1 HETATM 184 C C2 . TLN B 1 2 ? 38.600 30.098 4.299 1.00 39.20 ? 2 TLN B C2 1 HETATM 185 O O2 . TLN B 1 2 ? 38.437 31.314 4.251 1.00 38.80 ? 2 TLN B O2 1 HETATM 186 C "C3'" . TLN B 1 2 ? 41.705 29.938 6.959 1.00 40.47 ? 2 TLN B "C3'" 1 HETATM 187 C "C2'" . TLN B 1 2 ? 41.004 31.025 6.290 1.00 40.25 ? 2 TLN B "C2'" 1 HETATM 188 O "O2'" . TLN B 1 2 ? 42.041 32.041 6.220 1.00 39.79 ? 2 TLN B "O2'" 1 HETATM 189 O "O3'" . TLN B 1 2 ? 42.217 30.380 8.284 1.00 47.16 ? 2 TLN B "O3'" 1 HETATM 190 C "C6'" . TLN B 1 2 ? 43.320 31.340 5.815 1.00 37.98 ? 2 TLN B "C6'" 1 HETATM 191 P P . LCG B 1 3 ? 41.372 30.147 9.656 1.00 42.90 ? 3 LCG B P 1 HETATM 192 O OP1 . LCG B 1 3 ? 42.214 30.633 10.734 1.00 37.66 ? 3 LCG B OP1 1 HETATM 193 O "O5'" . LCG B 1 3 ? 40.105 31.030 9.433 1.00 36.33 ? 3 LCG B "O5'" 1 HETATM 194 C "C5'" . LCG B 1 3 ? 40.193 32.429 9.641 1.00 38.87 ? 3 LCG B "C5'" 1 HETATM 195 C "C3'" . LCG B 1 3 ? 37.721 32.511 9.900 1.00 40.35 ? 3 LCG B "C3'" 1 HETATM 196 C "C6'" . LCG B 1 3 ? 38.798 34.451 9.114 1.00 41.71 ? 3 LCG B "C6'" 1 HETATM 197 N N9 . LCG B 1 3 ? 36.544 31.322 7.373 1.00 39.57 ? 3 LCG B N9 1 HETATM 198 C C8 . LCG B 1 3 ? 37.158 30.133 7.438 1.00 41.69 ? 3 LCG B C8 1 HETATM 199 C C4 . LCG B 1 3 ? 35.308 31.143 6.862 1.00 39.47 ? 3 LCG B C4 1 HETATM 200 N N7 . LCG B 1 3 ? 36.311 29.198 7.003 1.00 45.53 ? 3 LCG B N7 1 HETATM 201 C C5 . LCG B 1 3 ? 35.157 29.817 6.657 1.00 41.05 ? 3 LCG B C5 1 HETATM 202 C C6 . LCG B 1 3 ? 34.023 29.327 6.164 1.00 39.06 ? 3 LCG B C6 1 HETATM 203 C "C2'" . LCG B 1 3 ? 36.787 33.236 8.974 1.00 43.32 ? 3 LCG B "C2'" 1 HETATM 204 O O6 . LCG B 1 3 ? 33.878 28.121 5.966 1.00 35.49 ? 3 LCG B O6 1 HETATM 205 C "C4'" . LCG B 1 3 ? 38.869 32.953 9.141 1.00 39.36 ? 3 LCG B "C4'" 1 HETATM 206 C "C1'" . LCG B 1 3 ? 37.153 32.631 7.688 1.00 40.27 ? 3 LCG B "C1'" 1 HETATM 207 C C2 . LCG B 1 3 ? 33.148 31.577 6.069 1.00 42.19 ? 3 LCG B C2 1 HETATM 208 N N1 . LCG B 1 3 ? 32.985 30.199 5.846 1.00 42.45 ? 3 LCG B N1 1 HETATM 209 O "O4'" . LCG B 1 3 ? 38.565 32.518 7.853 1.00 37.42 ? 3 LCG B "O4'" 1 HETATM 210 O OP2 . LCG B 1 3 ? 40.846 28.771 9.651 1.00 43.09 ? 3 LCG B OP2 1 HETATM 211 N N2 . LCG B 1 3 ? 32.149 32.414 5.764 1.00 38.48 ? 3 LCG B N2 1 HETATM 212 N N3 . LCG B 1 3 ? 34.324 32.014 6.568 1.00 36.55 ? 3 LCG B N3 1 HETATM 213 O "O2'" . LCG B 1 3 ? 37.287 34.595 8.951 1.00 41.74 ? 3 LCG B "O2'" 1 HETATM 214 O "O3'" . LCG B 1 3 ? 37.685 33.102 11.187 1.00 41.98 ? 3 LCG B "O3'" 1 ATOM 215 P P . U B 1 4 ? 36.940 32.373 12.398 1.00 44.49 ? 4 U B P 1 ATOM 216 O OP1 . U B 1 4 ? 37.155 33.180 13.614 1.00 43.06 ? 4 U B OP1 1 ATOM 217 O OP2 . U B 1 4 ? 37.347 30.967 12.398 1.00 34.94 ? 4 U B OP2 1 ATOM 218 O "O5'" . U B 1 4 ? 35.410 32.664 12.077 1.00 42.40 ? 4 U B "O5'" 1 ATOM 219 C "C5'" . U B 1 4 ? 34.966 34.033 12.046 1.00 43.34 ? 4 U B "C5'" 1 ATOM 220 C "C4'" . U B 1 4 ? 33.550 34.166 11.545 1.00 42.21 ? 4 U B "C4'" 1 ATOM 221 O "O4'" . U B 1 4 ? 33.458 33.655 10.190 1.00 41.22 ? 4 U B "O4'" 1 ATOM 222 C "C3'" . U B 1 4 ? 32.512 33.377 12.316 1.00 44.52 ? 4 U B "C3'" 1 ATOM 223 O "O3'" . U B 1 4 ? 32.150 33.976 13.558 1.00 45.10 ? 4 U B "O3'" 1 ATOM 224 C "C2'" . U B 1 4 ? 31.412 33.246 11.282 1.00 44.59 ? 4 U B "C2'" 1 ATOM 225 O "O2'" . U B 1 4 ? 30.693 34.427 11.020 1.00 41.74 ? 4 U B "O2'" 1 ATOM 226 C "C1'" . U B 1 4 ? 32.240 32.944 10.032 1.00 44.89 ? 4 U B "C1'" 1 ATOM 227 N N1 . U B 1 4 ? 32.542 31.517 9.797 1.00 40.02 ? 4 U B N1 1 ATOM 228 C C2 . U B 1 4 ? 31.568 30.735 9.178 1.00 43.70 ? 4 U B C2 1 ATOM 229 O O2 . U B 1 4 ? 30.452 31.159 8.883 1.00 43.48 ? 4 U B O2 1 ATOM 230 N N3 . U B 1 4 ? 31.932 29.427 8.965 1.00 36.03 ? 4 U B N3 1 ATOM 231 C C4 . U B 1 4 ? 33.132 28.831 9.302 1.00 39.41 ? 4 U B C4 1 ATOM 232 O O4 . U B 1 4 ? 33.319 27.648 9.022 1.00 40.66 ? 4 U B O4 1 ATOM 233 C C5 . U B 1 4 ? 34.080 29.703 9.927 1.00 37.85 ? 4 U B C5 1 ATOM 234 C C6 . U B 1 4 ? 33.761 30.983 10.145 1.00 37.29 ? 4 U B C6 1 ATOM 235 P P . A B 1 5 ? 31.700 33.019 14.764 1.00 41.95 ? 5 A B P 1 ATOM 236 O OP1 . A B 1 5 ? 31.549 33.849 15.955 1.00 48.64 ? 5 A B OP1 1 ATOM 237 O OP2 . A B 1 5 ? 32.600 31.854 14.842 1.00 40.76 ? 5 A B OP2 1 ATOM 238 O "O5'" . A B 1 5 ? 30.349 32.443 14.183 1.00 39.11 ? 5 A B "O5'" 1 ATOM 239 C "C5'" . A B 1 5 ? 29.286 33.328 13.897 1.00 38.02 ? 5 A B "C5'" 1 ATOM 240 C "C4'" . A B 1 5 ? 28.072 32.549 13.444 1.00 37.98 ? 5 A B "C4'" 1 ATOM 241 O "O4'" . A B 1 5 ? 28.290 32.006 12.119 1.00 40.52 ? 5 A B "O4'" 1 ATOM 242 C "C3'" . A B 1 5 ? 27.664 31.337 14.264 1.00 35.50 ? 5 A B "C3'" 1 ATOM 243 O "O3'" . A B 1 5 ? 26.855 31.669 15.374 1.00 33.95 ? 5 A B "O3'" 1 ATOM 244 C "C2'" . A B 1 5 ? 26.795 30.615 13.263 1.00 35.30 ? 5 A B "C2'" 1 ATOM 245 O "O2'" . A B 1 5 ? 25.617 31.320 13.062 1.00 32.50 ? 5 A B "O2'" 1 ATOM 246 C "C1'" . A B 1 5 ? 27.623 30.762 12.002 1.00 37.19 ? 5 A B "C1'" 1 ATOM 247 N N9 . A B 1 5 ? 28.630 29.712 11.877 1.00 38.33 ? 5 A B N9 1 ATOM 248 C C8 . A B 1 5 ? 29.933 29.734 12.311 1.00 37.70 ? 5 A B C8 1 ATOM 249 N N7 . A B 1 5 ? 30.608 28.655 12.006 1.00 36.82 ? 5 A B N7 1 ATOM 250 C C5 . A B 1 5 ? 29.688 27.867 11.331 1.00 36.29 ? 5 A B C5 1 ATOM 251 C C6 . A B 1 5 ? 29.788 26.596 10.746 1.00 44.89 ? 5 A B C6 1 ATOM 252 N N6 . A B 1 5 ? 30.902 25.862 10.776 1.00 41.97 ? 5 A B N6 1 ATOM 253 N N1 . A B 1 5 ? 28.683 26.085 10.151 1.00 39.42 ? 5 A B N1 1 ATOM 254 C C2 . A B 1 5 ? 27.564 26.829 10.135 1.00 39.89 ? 5 A B C2 1 ATOM 255 N N3 . A B 1 5 ? 27.356 28.047 10.636 1.00 36.56 ? 5 A B N3 1 ATOM 256 C C4 . A B 1 5 ? 28.472 28.515 11.225 1.00 34.92 ? 5 A B C4 1 ATOM 257 P P . C B 1 6 ? 26.866 30.773 16.726 1.00 40.14 ? 6 C B P 1 ATOM 258 O OP1 . C B 1 6 ? 26.180 31.559 17.772 1.00 44.75 ? 6 C B OP1 1 ATOM 259 O OP2 . C B 1 6 ? 28.212 30.267 16.959 1.00 33.77 ? 6 C B OP2 1 ATOM 260 O "O5'" . C B 1 6 ? 25.985 29.497 16.368 1.00 34.76 ? 6 C B "O5'" 1 ATOM 261 C "C5'" . C B 1 6 ? 24.597 29.606 16.068 1.00 35.33 ? 6 C B "C5'" 1 ATOM 262 C "C4'" . C B 1 6 ? 24.152 28.375 15.324 1.00 36.78 ? 6 C B "C4'" 1 ATOM 263 O "O4'" . C B 1 6 ? 24.941 28.222 14.115 1.00 35.43 ? 6 C B "O4'" 1 ATOM 264 C "C3'" . C B 1 6 ? 24.362 27.049 16.052 1.00 35.75 ? 6 C B "C3'" 1 ATOM 265 O "O3'" . C B 1 6 ? 23.373 26.790 17.047 1.00 33.95 ? 6 C B "O3'" 1 ATOM 266 C "C2'" . C B 1 6 ? 24.318 26.062 14.892 1.00 32.19 ? 6 C B "C2'" 1 ATOM 267 O "O2'" . C B 1 6 ? 23.030 25.731 14.451 1.00 31.49 ? 6 C B "O2'" 1 ATOM 268 C "C1'" . C B 1 6 ? 25.092 26.838 13.827 1.00 35.22 ? 6 C B "C1'" 1 ATOM 269 N N1 . C B 1 6 ? 26.526 26.485 13.849 1.00 34.26 ? 6 C B N1 1 ATOM 270 C C2 . C B 1 6 ? 26.928 25.337 13.157 1.00 33.37 ? 6 C B C2 1 ATOM 271 O O2 . C B 1 6 ? 26.076 24.685 12.523 1.00 34.68 ? 6 C B O2 1 ATOM 272 N N3 . C B 1 6 ? 28.229 24.972 13.182 1.00 28.67 ? 6 C B N3 1 ATOM 273 C C4 . C B 1 6 ? 29.109 25.691 13.875 1.00 30.14 ? 6 C B C4 1 ATOM 274 N N4 . C B 1 6 ? 30.371 25.262 13.906 1.00 31.42 ? 6 C B N4 1 ATOM 275 C C5 . C B 1 6 ? 28.724 26.847 14.618 1.00 30.81 ? 6 C B C5 1 ATOM 276 C C6 . C B 1 6 ? 27.432 27.197 14.589 1.00 32.48 ? 6 C B C6 1 ATOM 277 P P . A B 1 7 ? 23.744 26.019 18.386 1.00 35.13 ? 7 A B P 1 ATOM 278 O OP1 . A B 1 7 ? 22.683 26.320 19.379 1.00 37.03 ? 7 A B OP1 1 ATOM 279 O OP2 . A B 1 7 ? 25.164 26.210 18.664 1.00 32.47 ? 7 A B OP2 1 ATOM 280 O "O5'" . A B 1 7 ? 23.699 24.480 18.007 1.00 31.97 ? 7 A B "O5'" 1 ATOM 281 C "C5'" . A B 1 7 ? 22.522 23.907 17.418 1.00 32.32 ? 7 A B "C5'" 1 ATOM 282 C "C4'" . A B 1 7 ? 22.849 22.528 16.918 1.00 31.68 ? 7 A B "C4'" 1 ATOM 283 O "O4'" . A B 1 7 ? 23.749 22.643 15.778 1.00 30.10 ? 7 A B "O4'" 1 ATOM 284 C "C3'" . A B 1 7 ? 23.597 21.613 17.893 1.00 32.88 ? 7 A B "C3'" 1 ATOM 285 O "O3'" . A B 1 7 ? 22.814 20.810 18.780 1.00 33.23 ? 7 A B "O3'" 1 ATOM 286 C "C2'" . A B 1 7 ? 24.225 20.632 16.929 1.00 32.43 ? 7 A B "C2'" 1 ATOM 287 O "O2'" . A B 1 7 ? 23.245 19.736 16.447 1.00 35.87 ? 7 A B "O2'" 1 ATOM 288 C "C1'" . A B 1 7 ? 24.663 21.563 15.805 1.00 32.84 ? 7 A B "C1'" 1 ATOM 289 N N9 . A B 1 7 ? 26.026 22.087 15.907 1.00 33.42 ? 7 A B N9 1 ATOM 290 C C8 . A B 1 7 ? 26.459 23.306 16.366 1.00 34.99 ? 7 A B C8 1 ATOM 291 N N7 . A B 1 7 ? 27.749 23.492 16.231 1.00 37.98 ? 7 A B N7 1 ATOM 292 C C5 . A B 1 7 ? 28.194 22.322 15.630 1.00 33.45 ? 7 A B C5 1 ATOM 293 C C6 . A B 1 7 ? 29.472 21.884 15.242 1.00 35.76 ? 7 A B C6 1 ATOM 294 N N6 . A B 1 7 ? 30.577 22.618 15.382 1.00 35.68 ? 7 A B N6 1 ATOM 295 N N1 . A B 1 7 ? 29.581 20.641 14.714 1.00 32.96 ? 7 A B N1 1 ATOM 296 C C2 . A B 1 7 ? 28.473 19.909 14.574 1.00 35.83 ? 7 A B C2 1 ATOM 297 N N3 . A B 1 7 ? 27.216 20.210 14.904 1.00 37.11 ? 7 A B N3 1 ATOM 298 C C4 . A B 1 7 ? 27.144 21.447 15.428 1.00 34.52 ? 7 A B C4 1 HETATM 299 C "C1'" . TG C 2 . ? 35.078 32.528 -0.448 1.00 42.33 ? 101 TG A "C1'" 1 HETATM 300 C C2 . TG C 2 . ? 38.305 30.000 0.692 1.00 38.33 ? 101 TG A C2 1 HETATM 301 C "C2'" . TG C 2 . ? 36.030 33.300 -1.314 1.00 52.54 ? 101 TG A "C2'" 1 HETATM 302 C "C3'" . TG C 2 . ? 35.124 33.613 -2.496 1.00 51.80 ? 101 TG A "C3'" 1 HETATM 303 C C4 . TG C 2 . ? 36.179 30.407 -0.097 1.00 38.61 ? 101 TG A C4 1 HETATM 304 C "C4'" . TG C 2 . ? 33.847 33.926 -1.791 1.00 49.88 ? 101 TG A "C4'" 1 HETATM 305 C C5 . TG C 2 . ? 35.885 29.081 -0.188 1.00 37.09 ? 101 TG A C5 1 HETATM 306 C C6 . TG C 2 . ? 36.814 28.188 0.166 1.00 36.50 ? 101 TG A C6 1 HETATM 307 C C8 . TG C 2 . ? 34.160 30.164 -0.867 1.00 37.01 ? 101 TG A C8 1 HETATM 308 N N1 . TG C 2 . ? 38.036 28.670 0.566 1.00 37.51 ? 101 TG A N1 1 HETATM 309 N N2 . TG C 2 . ? 39.520 30.312 1.123 1.00 35.84 ? 101 TG A N2 1 HETATM 310 N N3 . TG C 2 . ? 37.357 30.887 0.360 1.00 35.96 ? 101 TG A N3 1 HETATM 311 N N7 . TG C 2 . ? 34.635 28.934 -0.692 1.00 37.58 ? 101 TG A N7 1 HETATM 312 N N9 . TG C 2 . ? 35.109 31.065 -0.528 1.00 39.53 ? 101 TG A N9 1 HETATM 313 O O1P . TG C 2 . ? 35.979 32.793 -5.155 1.00 52.27 ? 101 TG A O1P 1 HETATM 314 O "O2'" . TG C 2 . ? 36.447 34.481 -0.565 1.00 55.33 ? 101 TG A "O2'" 1 HETATM 315 O O2P . TG C 2 . ? 34.048 31.068 -5.152 1.00 54.67 ? 101 TG A O2P 1 HETATM 316 O "O3'" . TG C 2 . ? 34.847 32.408 -3.244 1.00 55.67 ? 101 TG A "O3'" 1 HETATM 317 O "O4'" . TG C 2 . ? 33.756 32.799 -0.939 1.00 45.62 ? 101 TG A "O4'" 1 HETATM 318 O O6 . TG C 2 . ? 36.676 26.941 0.102 1.00 33.66 ? 101 TG A O6 1 HETATM 319 P P . TG C 2 . ? 34.578 32.438 -4.802 1.00 64.77 ? 101 TG A P 1 HETATM 320 O O3P . TG C 2 . ? 33.635 33.531 -5.066 1.00 75.37 ? 101 TG A O3P 1 HETATM 321 C "C1'" . TG D 2 . ? 28.032 19.624 18.638 1.00 37.42 ? 102 TG A "C1'" 1 HETATM 322 C C2 . TG D 2 . ? 32.114 18.699 17.435 1.00 35.04 ? 102 TG A C2 1 HETATM 323 C "C2'" . TG D 2 . ? 27.916 18.703 19.795 1.00 43.80 ? 102 TG A "C2'" 1 HETATM 324 C "C3'" . TG D 2 . ? 27.176 19.546 20.827 1.00 44.02 ? 102 TG A "C3'" 1 HETATM 325 C C4 . TG D 2 . ? 30.410 20.120 18.219 1.00 35.55 ? 102 TG A C4 1 HETATM 326 C "C4'" . TG D 2 . ? 26.177 20.262 20.004 1.00 40.98 ? 102 TG A "C4'" 1 HETATM 327 C C5 . TG D 2 . ? 31.237 21.206 18.287 1.00 36.55 ? 102 TG A C5 1 HETATM 328 C C6 . TG D 2 . ? 32.559 21.044 17.925 1.00 38.21 ? 102 TG A C6 1 HETATM 329 C C8 . TG D 2 . ? 29.309 21.850 18.885 1.00 33.53 ? 102 TG A C8 1 HETATM 330 N N1 . TG D 2 . ? 33.014 19.751 17.500 1.00 35.93 ? 102 TG A N1 1 HETATM 331 N N2 . TG D 2 . ? 32.570 17.525 17.052 1.00 40.34 ? 102 TG A N2 1 HETATM 332 N N3 . TG D 2 . ? 30.820 18.875 17.791 1.00 34.67 ? 102 TG A N3 1 HETATM 333 N N7 . TG D 2 . ? 30.526 22.299 18.704 1.00 32.52 ? 102 TG A N7 1 HETATM 334 N N9 . TG D 2 . ? 29.228 20.532 18.617 1.00 33.62 ? 102 TG A N9 1 HETATM 335 O O1P . TG D 2 . ? 28.473 19.465 23.503 1.00 50.31 ? 102 TG A O1P 1 HETATM 336 O "O2'" . TG D 2 . ? 27.036 17.648 19.400 1.00 47.66 ? 102 TG A "O2'" 1 HETATM 337 O O2P . TG D 2 . ? 28.738 22.001 23.149 1.00 52.67 ? 102 TG A O2P 1 HETATM 338 O "O3'" . TG D 2 . ? 28.006 20.521 21.432 1.00 45.76 ? 102 TG A "O3'" 1 HETATM 339 O "O4'" . TG D 2 . ? 26.826 20.432 18.740 1.00 42.45 ? 102 TG A "O4'" 1 HETATM 340 O O6 . TG D 2 . ? 33.388 21.982 17.971 1.00 35.67 ? 102 TG A O6 1 HETATM 341 P P . TG D 2 . ? 27.931 20.766 22.970 1.00 48.58 ? 102 TG A P 1 HETATM 342 O O3P . TG D 2 . ? 26.489 20.979 23.159 1.00 57.75 ? 102 TG A O3P 1 HETATM 343 O O . HOH E 3 . ? 24.083 24.944 8.853 1.00 39.02 ? 201 HOH A O 1 HETATM 344 O O . HOH E 3 . ? 25.556 18.864 11.421 0.50 35.76 ? 202 HOH A O 1 HETATM 345 O O . HOH E 3 . ? 25.592 18.753 11.653 0.50 39.49 ? 203 HOH A O 1 HETATM 346 O O . HOH F 3 . ? 24.985 18.330 14.821 1.00 39.32 ? 101 HOH B O 1 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 LCC 1 1 1 LCC LCC A . n A 1 2 TLN 2 2 2 TLN TLN A . n A 1 3 LCG 3 3 3 LCG LCG A . n A 1 4 U 4 4 4 U U A . n A 1 5 A 5 5 5 A A A . n A 1 6 C 6 6 6 C C A . n A 1 7 A 7 7 7 A A A . n B 1 1 LCC 1 1 1 LCC LCC B . n B 1 2 TLN 2 2 2 TLN TLN B . n B 1 3 LCG 3 3 3 LCG LCG B . n B 1 4 U 4 4 4 U U B . n B 1 5 A 5 5 5 A A B . n B 1 6 C 6 6 6 C C B . n B 1 7 A 7 7 7 A A B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 TG 1 101 1 TG TFG A . D 2 TG 1 102 2 TG TFG A . E 3 HOH 1 201 4 HOH HOH A . E 3 HOH 2 202 2 HOH HOH A . E 3 HOH 3 203 1 HOH HOH A . F 3 HOH 1 101 3 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2580 ? 1 MORE 15 ? 1 'SSA (A^2)' 2920 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2020-12-09 2 'Structure model' 1 1 2021-01-06 3 'Structure model' 1 2 2021-02-03 4 'Structure model' 1 3 2023-10-11 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 3 'Structure model' citation 3 4 'Structure model' chem_comp_atom 4 4 'Structure model' chem_comp_bond 5 4 'Structure model' database_2 6 4 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.pdbx_database_id_DOI' 2 2 'Structure model' '_citation.pdbx_database_id_PubMed' 3 2 'Structure model' '_citation.title' 4 3 'Structure model' '_citation.journal_volume' 5 3 'Structure model' '_citation.page_first' 6 3 'Structure model' '_citation.page_last' 7 3 'Structure model' '_citation.year' 8 4 'Structure model' '_database_2.pdbx_DOI' 9 4 'Structure model' '_database_2.pdbx_database_accession' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0189 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # _pdbx_entry_details.entry_id 6U89 _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 HOH O O N N 73 HOH H1 H N N 74 HOH H2 H N N 75 LCC "O5'" O N N 76 LCC "C5'" C N N 77 LCC "C4'" C N R 78 LCC "O4'" O N N 79 LCC "C1'" C N R 80 LCC N1 N N N 81 LCC C6 C N N 82 LCC C5 C N N 83 LCC C5M C N N 84 LCC C4 C N N 85 LCC N4 N N N 86 LCC N3 N N N 87 LCC C2 C N N 88 LCC O2 O N N 89 LCC "C3'" C N S 90 LCC "C2'" C N R 91 LCC "O2'" O N N 92 LCC "O3'" O N N 93 LCC "C6'" C N N 94 LCC P P N N 95 LCC O1P O N N 96 LCC O2P O N N 97 LCC OXT O N N 98 LCC "H5'1" H N N 99 LCC "H5'2" H N N 100 LCC "H1'" H N N 101 LCC H6 H N N 102 LCC H5M1 H N N 103 LCC H5M2 H N N 104 LCC H5M3 H N N 105 LCC H41 H N N 106 LCC H42 H N N 107 LCC "H3'" H N N 108 LCC "H2'1" H N N 109 LCC H3T H N N 110 LCC "H6'1" H N N 111 LCC "H6'2" H N N 112 LCC H1P H N N 113 LCC HXT H N N 114 LCG P P N N 115 LCG OP1 O N N 116 LCG "O5'" O N N 117 LCG "C5'" C N N 118 LCG "C3'" C N S 119 LCG "C6'" C N N 120 LCG N9 N Y N 121 LCG C8 C Y N 122 LCG C4 C Y N 123 LCG N7 N Y N 124 LCG C5 C Y N 125 LCG C6 C N N 126 LCG "C2'" C N R 127 LCG O6 O N N 128 LCG "C4'" C N R 129 LCG "C1'" C N R 130 LCG C2 C N N 131 LCG N1 N N N 132 LCG "O4'" O N N 133 LCG OP2 O N N 134 LCG N2 N N N 135 LCG N3 N N N 136 LCG "O2'" O N N 137 LCG "O3'" O N N 138 LCG OP3 O N N 139 LCG "H5'" H N N 140 LCG "H5''" H N N 141 LCG "H3'" H N N 142 LCG "H6'1" H N N 143 LCG "H6'2" H N N 144 LCG H8 H N N 145 LCG "H2'" H N N 146 LCG "H1'" H N N 147 LCG H1 H N N 148 LCG HOP2 H N N 149 LCG H21 H N N 150 LCG H22 H N N 151 LCG "HO3'" H N N 152 LCG HOP3 H N N 153 TG "C1'" C N R 154 TG C2 C N N 155 TG "C2'" C N R 156 TG "C3'" C N S 157 TG C4 C Y N 158 TG "C4'" C N N 159 TG C5 C Y N 160 TG C6 C N N 161 TG C8 C Y N 162 TG N1 N N N 163 TG N2 N N N 164 TG N3 N N N 165 TG N7 N Y N 166 TG N9 N Y N 167 TG O1P O N N 168 TG "O2'" O N N 169 TG O2P O N N 170 TG "O3'" O N N 171 TG "O4'" O N N 172 TG O6 O N N 173 TG P P N N 174 TG H1 H N N 175 TG H2 H N N 176 TG H3 H N N 177 TG H4 H N N 178 TG H5 H N N 179 TG H6 H N N 180 TG H7 H N N 181 TG H8 H N N 182 TG H9 H N N 183 TG H11 H N N 184 TG O3P O N N 185 TG H10 H N N 186 TLN P P N N 187 TLN OP1 O N N 188 TLN OP2 O N N 189 TLN OP3 O N N 190 TLN "O5'" O N N 191 TLN "C5'" C N N 192 TLN "C4'" C N R 193 TLN "O4'" O N N 194 TLN "C1'" C N R 195 TLN N1 N N N 196 TLN C6 C N N 197 TLN C5 C N N 198 TLN C5M C N N 199 TLN C4 C N N 200 TLN O4 O N N 201 TLN N3 N N N 202 TLN C2 C N N 203 TLN O2 O N N 204 TLN "C3'" C N S 205 TLN "C2'" C N R 206 TLN "O2'" O N N 207 TLN "O3'" O N N 208 TLN "C6'" C N N 209 TLN HOP2 H N N 210 TLN HOP3 H N N 211 TLN "H5'" H N N 212 TLN "H5''" H N N 213 TLN "H1'" H N N 214 TLN H6 H N N 215 TLN H71 H N N 216 TLN H72 H N N 217 TLN H73 H N N 218 TLN H3 H N N 219 TLN "H3'" H N N 220 TLN "H2'" H N N 221 TLN "HO3'" H N N 222 TLN "H6'1" H N N 223 TLN "H6'2" H N N 224 U OP3 O N N 225 U P P N N 226 U OP1 O N N 227 U OP2 O N N 228 U "O5'" O N N 229 U "C5'" C N N 230 U "C4'" C N R 231 U "O4'" O N N 232 U "C3'" C N S 233 U "O3'" O N N 234 U "C2'" C N R 235 U "O2'" O N N 236 U "C1'" C N R 237 U N1 N N N 238 U C2 C N N 239 U O2 O N N 240 U N3 N N N 241 U C4 C N N 242 U O4 O N N 243 U C5 C N N 244 U C6 C N N 245 U HOP3 H N N 246 U HOP2 H N N 247 U "H5'" H N N 248 U "H5''" H N N 249 U "H4'" H N N 250 U "H3'" H N N 251 U "HO3'" H N N 252 U "H2'" H N N 253 U "HO2'" H N N 254 U "H1'" H N N 255 U H3 H N N 256 U H5 H N N 257 U H6 H N N 258 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 HOH O H1 sing N N 76 HOH O H2 sing N N 77 LCC "O5'" "C5'" sing N N 78 LCC "O5'" P sing N N 79 LCC "C5'" "C4'" sing N N 80 LCC "C5'" "H5'1" sing N N 81 LCC "C5'" "H5'2" sing N N 82 LCC "C4'" "O4'" sing N N 83 LCC "C4'" "C3'" sing N N 84 LCC "C4'" "C6'" sing N N 85 LCC "O4'" "C1'" sing N N 86 LCC "C1'" N1 sing N N 87 LCC "C1'" "C2'" sing N N 88 LCC "C1'" "H1'" sing N N 89 LCC N1 C6 sing N N 90 LCC N1 C2 sing N N 91 LCC C6 C5 doub N N 92 LCC C6 H6 sing N N 93 LCC C5 C5M sing N N 94 LCC C5 C4 sing N N 95 LCC C5M H5M1 sing N N 96 LCC C5M H5M2 sing N N 97 LCC C5M H5M3 sing N N 98 LCC C4 N4 sing N N 99 LCC C4 N3 doub N N 100 LCC N4 H41 sing N N 101 LCC N4 H42 sing N N 102 LCC N3 C2 sing N N 103 LCC C2 O2 doub N N 104 LCC "C3'" "C2'" sing N N 105 LCC "C3'" "O3'" sing N N 106 LCC "C3'" "H3'" sing N N 107 LCC "C2'" "O2'" sing N N 108 LCC "C2'" "H2'1" sing N N 109 LCC "O2'" "C6'" sing N N 110 LCC "O3'" H3T sing N N 111 LCC "C6'" "H6'1" sing N N 112 LCC "C6'" "H6'2" sing N N 113 LCC P O1P sing N N 114 LCC P O2P doub N N 115 LCC P OXT sing N N 116 LCC O1P H1P sing N N 117 LCC OXT HXT sing N N 118 LCG P OP1 doub N N 119 LCG P "O5'" sing N N 120 LCG P OP2 sing N N 121 LCG P OP3 sing N N 122 LCG "O5'" "C5'" sing N N 123 LCG "C5'" "C4'" sing N N 124 LCG "C5'" "H5'" sing N N 125 LCG "C5'" "H5''" sing N N 126 LCG "C3'" "C2'" sing N N 127 LCG "C3'" "C4'" sing N N 128 LCG "C3'" "O3'" sing N N 129 LCG "C3'" "H3'" sing N N 130 LCG "C6'" "C4'" sing N N 131 LCG "C6'" "O2'" sing N N 132 LCG "C6'" "H6'1" sing N N 133 LCG "C6'" "H6'2" sing N N 134 LCG N9 C8 sing Y N 135 LCG N9 C4 sing Y N 136 LCG N9 "C1'" sing N N 137 LCG C8 N7 doub Y N 138 LCG C8 H8 sing N N 139 LCG C4 C5 doub Y N 140 LCG C4 N3 sing N N 141 LCG N7 C5 sing Y N 142 LCG C5 C6 sing N N 143 LCG C6 O6 doub N N 144 LCG C6 N1 sing N N 145 LCG "C2'" "C1'" sing N N 146 LCG "C2'" "O2'" sing N N 147 LCG "C2'" "H2'" sing N N 148 LCG "C4'" "O4'" sing N N 149 LCG "C1'" "O4'" sing N N 150 LCG "C1'" "H1'" sing N N 151 LCG C2 N1 sing N N 152 LCG C2 N2 sing N N 153 LCG C2 N3 doub N N 154 LCG N1 H1 sing N N 155 LCG OP2 HOP2 sing N N 156 LCG N2 H21 sing N N 157 LCG N2 H22 sing N N 158 LCG "O3'" "HO3'" sing N N 159 LCG OP3 HOP3 sing N N 160 TG N2 C2 sing N N 161 TG N1 C2 sing N N 162 TG N1 C6 sing N N 163 TG O6 C6 doub N N 164 TG C2 N3 doub N N 165 TG C6 C5 sing N N 166 TG N3 C4 sing N N 167 TG C5 C4 doub Y N 168 TG C5 N7 sing Y N 169 TG C4 N9 sing Y N 170 TG N7 C8 doub Y N 171 TG N9 C8 sing Y N 172 TG N9 "C1'" sing N N 173 TG "C1'" "O4'" sing N N 174 TG "C1'" "C2'" sing N N 175 TG "O4'" "C4'" sing N N 176 TG "C2'" "O2'" sing N N 177 TG "C2'" "C3'" sing N N 178 TG "C4'" "C3'" sing N N 179 TG "C3'" "O3'" sing N N 180 TG "O3'" P sing N N 181 TG P O1P doub N N 182 TG P O2P doub N N 183 TG "C1'" H1 sing N N 184 TG "C2'" H2 sing N N 185 TG "C3'" H3 sing N N 186 TG "C4'" H4 sing N N 187 TG "C4'" H5 sing N N 188 TG C8 H6 sing N N 189 TG N1 H7 sing N N 190 TG N2 H8 sing N N 191 TG N2 H9 sing N N 192 TG "O2'" H11 sing N N 193 TG P O3P sing N N 194 TG O3P H10 sing N N 195 TLN P OP1 doub N N 196 TLN P OP2 sing N N 197 TLN P OP3 sing N N 198 TLN P "O5'" sing N N 199 TLN OP2 HOP2 sing N N 200 TLN OP3 HOP3 sing N N 201 TLN "O5'" "C5'" sing N N 202 TLN "C5'" "C4'" sing N N 203 TLN "C5'" "H5'" sing N N 204 TLN "C5'" "H5''" sing N N 205 TLN "C4'" "O4'" sing N N 206 TLN "C4'" "C3'" sing N N 207 TLN "C4'" "C6'" sing N N 208 TLN "O4'" "C1'" sing N N 209 TLN "C1'" N1 sing N N 210 TLN "C1'" "C2'" sing N N 211 TLN "C1'" "H1'" sing N N 212 TLN N1 C6 sing N N 213 TLN N1 C2 sing N N 214 TLN C6 C5 doub N N 215 TLN C6 H6 sing N N 216 TLN C5 C5M sing N N 217 TLN C5 C4 sing N N 218 TLN C5M H71 sing N N 219 TLN C5M H72 sing N N 220 TLN C5M H73 sing N N 221 TLN C4 O4 doub N N 222 TLN C4 N3 sing N N 223 TLN N3 C2 sing N N 224 TLN N3 H3 sing N N 225 TLN C2 O2 doub N N 226 TLN "C3'" "C2'" sing N N 227 TLN "C3'" "O3'" sing N N 228 TLN "C3'" "H3'" sing N N 229 TLN "C2'" "O2'" sing N N 230 TLN "C2'" "H2'" sing N N 231 TLN "O2'" "C6'" sing N N 232 TLN "O3'" "HO3'" sing N N 233 TLN "C6'" "H6'1" sing N N 234 TLN "C6'" "H6'2" sing N N 235 U OP3 P sing N N 236 U OP3 HOP3 sing N N 237 U P OP1 doub N N 238 U P OP2 sing N N 239 U P "O5'" sing N N 240 U OP2 HOP2 sing N N 241 U "O5'" "C5'" sing N N 242 U "C5'" "C4'" sing N N 243 U "C5'" "H5'" sing N N 244 U "C5'" "H5''" sing N N 245 U "C4'" "O4'" sing N N 246 U "C4'" "C3'" sing N N 247 U "C4'" "H4'" sing N N 248 U "O4'" "C1'" sing N N 249 U "C3'" "O3'" sing N N 250 U "C3'" "C2'" sing N N 251 U "C3'" "H3'" sing N N 252 U "O3'" "HO3'" sing N N 253 U "C2'" "O2'" sing N N 254 U "C2'" "C1'" sing N N 255 U "C2'" "H2'" sing N N 256 U "O2'" "HO2'" sing N N 257 U "C1'" N1 sing N N 258 U "C1'" "H1'" sing N N 259 U N1 C2 sing N N 260 U N1 C6 sing N N 261 U C2 O2 doub N N 262 U C2 N3 sing N N 263 U N3 C4 sing N N 264 U N3 H3 sing N N 265 U C4 O4 doub N N 266 U C4 C5 sing N N 267 U C5 C6 doub N N 268 U C5 H5 sing N N 269 U C6 H6 sing N N 270 # _ndb_struct_conf_na.entry_id 6U89 _ndb_struct_conf_na.feature 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A TLN 2 1_555 B A 7 1_555 -0.076 -0.056 -0.038 -6.263 -11.859 2.637 1 A_TLN2:A7_B A 2 ? B 7 ? 20 1 1 A LCG 3 1_555 B C 6 1_555 -0.443 -0.202 -0.176 -6.088 -20.294 -3.790 2 A_LCG3:C6_B A 3 ? B 6 ? 19 1 1 A U 4 1_555 B A 5 1_555 -0.207 -0.112 0.163 -1.003 -11.809 -4.330 3 A_U4:A5_B A 4 ? B 5 ? 20 1 1 A A 5 1_555 B U 4 1_555 -0.230 -0.121 0.128 3.858 -13.850 0.785 4 A_A5:U4_B A 5 ? B 4 ? 20 1 1 A C 6 1_555 B LCG 3 1_555 0.468 -0.389 0.104 4.350 -18.825 1.551 5 A_C6:LCG3_B A 6 ? B 3 ? 19 1 1 A A 7 1_555 B TLN 2 1_555 0.052 -0.103 0.073 4.623 -12.579 5.190 6 A_A7:TLN2_B A 7 ? B 2 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A TLN 2 1_555 B A 7 1_555 A LCG 3 1_555 B C 6 1_555 0.117 -1.483 3.149 1.033 16.723 27.717 -5.172 -0.056 1.963 31.524 -1.947 32.303 1 AA_TLN2LCG3:C6A7_BB A 2 ? B 7 ? A 3 ? B 6 ? 1 A LCG 3 1_555 B C 6 1_555 A U 4 1_555 B A 5 1_555 -0.306 -1.127 3.122 -3.614 7.547 31.564 -3.213 -0.034 2.802 13.577 6.502 32.627 2 AA_LCG3U4:A5C6_BB A 3 ? B 6 ? A 4 ? B 5 ? 1 A U 4 1_555 B A 5 1_555 A A 5 1_555 B U 4 1_555 0.236 -1.404 3.033 -0.932 7.956 32.661 -3.570 -0.542 2.621 13.889 1.627 33.603 3 AA_U4A5:U4A5_BB A 4 ? B 5 ? A 5 ? B 4 ? 1 A A 5 1_555 B U 4 1_555 A C 6 1_555 B LCG 3 1_555 0.073 -1.302 3.271 0.610 5.677 35.204 -2.925 -0.033 3.032 9.311 -1.000 35.650 4 AA_A5C6:LCG3U4_BB A 5 ? B 4 ? A 6 ? B 3 ? 1 A C 6 1_555 B LCG 3 1_555 A A 7 1_555 B TLN 2 1_555 0.042 -1.534 3.136 0.859 10.186 27.762 -4.909 0.078 2.433 20.375 -1.718 29.550 5 AA_C6A7:TLN2LCG3_BB A 6 ? B 3 ? A 7 ? B 2 ? # _pdbx_audit_support.funding_organization 'Howard Hughes Medical Institute (HHMI)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id TG _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id TG _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '2-azanyl-9-[(2~{R},3~{R},4~{S})-3-oxidanyl-4-[oxidanyl-bis(oxidanylidene)-$l^{6}-phosphanyl]oxy-oxolan-2-yl]-1~{H}-purin-6-one' TG 3 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 5HBW _pdbx_initial_refinement_model.details ? # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? #