data_7C0N # _entry.id 7C0N # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.333 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 7C0N WWPDB D_1300013077 # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 7C0N _pdbx_database_status.recvd_initial_deposition_date 2020-05-01 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'He, C.' 1 ? 'Wu, S.' 2 ? 'Chi, C.' 3 ? 'Zhang, W.' 4 ? 'Ma, M.' 5 ? 'Lai, L.' 6 ? 'Dong, S.' 7 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev J.Am.Chem.Soc. _citation.journal_id_ASTM JACSAT _citation.journal_id_CSD ? _citation.journal_id_ISSN 1520-5126 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 142 _citation.language ? _citation.page_first 17015 _citation.page_last 17023 _citation.title 'Glycopeptide Self-Assembly Modulated by Glycan Stereochemistry through Glycan-Aromatic Interactions.' _citation.year 2020 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1021/jacs.0c06360 _citation.pdbx_database_id_PubMed 32946227 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'He, C.' 1 ? primary 'Wu, S.' 2 ? primary 'Liu, D.' 3 ? primary 'Chi, C.' 4 ? primary 'Zhang, W.' 5 ? primary 'Ma, M.' 6 ? primary 'Lai, L.' 7 ? primary 'Dong, S.' 8 ? # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 7C0N _cell.details ? _cell.formula_units_Z ? _cell.length_a 72.837 _cell.length_a_esd ? _cell.length_b 72.837 _cell.length_b_esd ? _cell.length_c 72.837 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 192 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7C0N _symmetry.cell_setting ? _symmetry.Int_Tables_number 210 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'F 41 3 2' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'Self-assembling galactosylated tyrosine-rich peptide' 773.853 2 ? ? ? ? 2 non-polymer nat beta-D-galactopyranose 180.156 2 ? ? ? ? 3 non-polymer syn 'SULFATE ION' 96.063 1 ? ? ? ? 4 water nat water 18.015 3 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code YYCYY _entity_poly.pdbx_seq_one_letter_code_can YYCYY _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 TYR n 1 2 TYR n 1 3 CYS n 1 4 TYR n 1 5 TYR n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 5 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 7C0N _struct_ref.pdbx_db_accession 7C0N _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 7C0N A 1 ? 5 ? 7C0N 1 ? 5 ? 1 5 2 1 7C0N B 1 ? 5 ? 7C0N 1 ? 5 ? 1 5 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GAL 'D-saccharide, beta linking' . beta-D-galactopyranose 'beta-D-galactose; D-galactose; galactose' 'C6 H12 O6' 180.156 HOH non-polymer . WATER ? 'H2 O' 18.015 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7C0N _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.60 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 52.71 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 4.2 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '40%(w/v) PEG 1000, 0.1 M Sodium phosphate dibasic/Citric acid(pH 4.2), 0.2 M Lithium sulfate' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 293 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'RAYONIX MX-300' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2019-06-08 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.54191 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SSRF BEAMLINE BL17B1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.54191 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL17B1 _diffrn_source.pdbx_synchrotron_site SSRF # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 7C0N _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.55 _reflns.d_resolution_low 50 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 2694 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 100 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 72.6 _reflns.pdbx_Rmerge_I_obs 0.078 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value 0.078 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 54.2 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 1.55 _reflns_shell.d_res_low 1.61 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 17 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 256 _reflns_shell.percent_possible_all ? _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.369 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 63.0 _reflns_shell.pdbx_Rsym_value 0.369 _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max 52.980 _refine.B_iso_mean ? _refine.B_iso_min 10.840 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 7C0N _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.552 _refine.ls_d_res_low 25.752 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 2682 _refine.ls_number_reflns_R_free 118 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 100.0000 _refine.ls_percent_reflns_R_free 4.4000 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_free 0.2495 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2344 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id final _refine_hist.details ? _refine_hist.d_res_high 1.552 _refine_hist.d_res_low 25.752 _refine_hist.number_atoms_solvent 3 _refine_hist.number_atoms_total 160 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total 10 _refine_hist.pdbx_B_iso_mean_ligand 26.31 _refine_hist.pdbx_B_iso_mean_solvent 24.37 _refine_hist.pdbx_number_atoms_protein 107 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 50 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 1.552 _refine_ls_shell.d_res_low 1.607 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free ? _refine_ls_shell.number_reflns_R_work 255 _refine_ls_shell.percent_reflns_obs 100.0000 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.2328 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.2326 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_R_complete ? _refine_ls_shell.pdbx_total_number_of_bins_used ? _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 7C0N _struct.title 'Crystal structure of a self-assembling galactosylated peptide homodimer' _struct.pdbx_descriptor 'Self-assembling galactosylated tyrosine-rich peptide' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7C0N _struct_keywords.text 'Self-assembling glycopeptide, tyrosine-rich peptide, O-glycan modification., DE NOVO PROTEIN' _struct_keywords.pdbx_keywords 'DE NOVO PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 2 ? F N N 4 ? G N N 4 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 3 SG ? ? ? 1_555 B CYS 3 SG ? ? A CYS 3 B CYS 3 1_555 ? ? ? ? ? ? ? 2.063 ? ? covale1 covale one ? A TYR 4 OH ? ? ? 1_555 C GAL . C1 ? ? A TYR 4 A GAL 101 1_555 ? ? ? ? ? ? ? 1.404 ? ? covale2 covale one ? B TYR 4 OH ? ? ? 1_555 E GAL . C1 ? ? B TYR 4 B GAL 101 1_555 ? ? ? ? ? ? ? 1.373 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # _struct_sheet.id AA1 _struct_sheet.type ? _struct_sheet.number_strands 2 _struct_sheet.details ? # _struct_sheet_order.sheet_id AA1 _struct_sheet_order.range_id_1 1 _struct_sheet_order.range_id_2 2 _struct_sheet_order.offset ? _struct_sheet_order.sense anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 TYR A 2 ? TYR A 4 ? TYR A 2 TYR A 4 AA1 2 TYR B 2 ? TYR B 4 ? TYR B 2 TYR B 4 # _pdbx_struct_sheet_hbond.sheet_id AA1 _pdbx_struct_sheet_hbond.range_id_1 1 _pdbx_struct_sheet_hbond.range_id_2 2 _pdbx_struct_sheet_hbond.range_1_label_atom_id N _pdbx_struct_sheet_hbond.range_1_label_comp_id TYR _pdbx_struct_sheet_hbond.range_1_label_asym_id A _pdbx_struct_sheet_hbond.range_1_label_seq_id 2 _pdbx_struct_sheet_hbond.range_1_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_1_auth_atom_id N _pdbx_struct_sheet_hbond.range_1_auth_comp_id TYR _pdbx_struct_sheet_hbond.range_1_auth_asym_id A _pdbx_struct_sheet_hbond.range_1_auth_seq_id 2 _pdbx_struct_sheet_hbond.range_2_label_atom_id O _pdbx_struct_sheet_hbond.range_2_label_comp_id TYR _pdbx_struct_sheet_hbond.range_2_label_asym_id B _pdbx_struct_sheet_hbond.range_2_label_seq_id 4 _pdbx_struct_sheet_hbond.range_2_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_2_auth_atom_id O _pdbx_struct_sheet_hbond.range_2_auth_comp_id TYR _pdbx_struct_sheet_hbond.range_2_auth_asym_id B _pdbx_struct_sheet_hbond.range_2_auth_seq_id 4 # _atom_sites.entry_id 7C0N _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.013729 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013729 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.013729 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.scat_dispersion_real _atom_type.scat_dispersion_imag _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c _atom_type.scat_source _atom_type.scat_dispersion_source C ? ? 3.54356 2.42580 ? ? 25.62398 1.50364 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? H ? ? ? ? ? ? ? ? ? ? ? ? ? N ? ? 4.01032 2.96436 ? ? 19.97189 1.75589 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O ? ? 4.49882 3.47563 ? ? 15.80542 1.70748 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? S ? ? 9.55732 6.39887 ? ? 1.23737 29.19336 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_alt_id _atom_site.label_comp_id _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.label_seq_id _atom_site.pdbx_PDB_ins_code _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_seq_id _atom_site.auth_comp_id _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.pdbx_PDB_model_num ATOM 1 N N . TYR A 1 1 ? 13.912 42.759 29.975 1.00 15.66 ? 1 TYR A N 1 ATOM 2 C CA . TYR A 1 1 ? 14.987 42.035 30.668 1.00 14.39 ? 1 TYR A CA 1 ATOM 3 C C . TYR A 1 1 ? 15.714 41.113 29.700 1.00 14.77 ? 1 TYR A C 1 ATOM 4 O O . TYR A 1 1 ? 15.271 40.937 28.564 1.00 13.94 ? 1 TYR A O 1 ATOM 5 C CB . TYR A 1 1 ? 14.425 41.251 31.857 1.00 15.73 ? 1 TYR A CB 1 ATOM 6 C CG . TYR A 1 1 ? 13.426 40.164 31.543 1.00 17.26 ? 1 TYR A CG 1 ATOM 7 C CD1 . TYR A 1 1 ? 12.071 40.444 31.433 1.00 18.43 ? 1 TYR A CD1 1 ATOM 8 C CD2 . TYR A 1 1 ? 13.833 38.847 31.403 1.00 16.89 ? 1 TYR A CD2 1 ATOM 9 C CE1 . TYR A 1 1 ? 11.165 39.445 31.175 1.00 20.18 ? 1 TYR A CE1 1 ATOM 10 C CE2 . TYR A 1 1 ? 12.938 37.848 31.155 1.00 17.27 ? 1 TYR A CE2 1 ATOM 11 C CZ . TYR A 1 1 ? 11.600 38.149 31.034 1.00 18.82 ? 1 TYR A CZ 1 ATOM 12 O OH . TYR A 1 1 ? 10.699 37.136 30.784 1.00 26.93 ? 1 TYR A OH 1 ATOM 13 N N . TYR A 1 2 ? 16.849 40.546 30.100 1.00 12.13 ? 2 TYR A N 1 ATOM 14 C CA . TYR A 1 2 ? 17.559 39.634 29.205 1.00 11.03 ? 2 TYR A CA 1 ATOM 15 C C . TYR A 1 2 ? 18.161 38.479 29.994 1.00 13.09 ? 2 TYR A C 1 ATOM 16 O O . TYR A 1 2 ? 18.490 38.606 31.175 1.00 13.98 ? 2 TYR A O 1 ATOM 17 C CB . TYR A 1 2 ? 18.645 40.353 28.377 1.00 13.04 ? 2 TYR A CB 1 ATOM 18 C CG . TYR A 1 2 ? 19.718 41.070 29.161 1.00 11.39 ? 2 TYR A CG 1 ATOM 19 C CD1 . TYR A 1 2 ? 19.469 42.306 29.748 1.00 13.08 ? 2 TYR A CD1 1 ATOM 20 C CD2 . TYR A 1 2 ? 20.995 40.535 29.279 1.00 12.80 ? 2 TYR A CD2 1 ATOM 21 C CE1 . TYR A 1 2 ? 20.466 42.973 30.469 1.00 13.68 ? 2 TYR A CE1 1 ATOM 22 C CE2 . TYR A 1 2 ? 22.003 41.204 29.988 1.00 13.68 ? 2 TYR A CE2 1 ATOM 23 C CZ . TYR A 1 2 ? 21.724 42.425 30.574 1.00 13.94 ? 2 TYR A CZ 1 ATOM 24 O OH . TYR A 1 2 ? 22.706 43.102 31.280 1.00 14.96 ? 2 TYR A OH 1 ATOM 25 N N . CYS A 1 3 ? 18.297 37.341 29.322 1.00 12.14 ? 3 CYS A N 1 ATOM 26 C CA . CYS A 1 3 ? 18.737 36.110 29.967 1.00 12.53 ? 3 CYS A CA 1 ATOM 27 C C . CYS A 1 3 ? 19.838 35.453 29.150 1.00 14.06 ? 3 CYS A C 1 ATOM 28 O O . CYS A 1 3 ? 19.787 35.435 27.914 1.00 14.13 ? 3 CYS A O 1 ATOM 29 C CB . CYS A 1 3 ? 17.610 35.085 30.125 1.00 15.53 ? 3 CYS A CB 1 ATOM 30 S SG . CYS A 1 3 ? 16.097 35.693 30.873 1.00 15.19 ? 3 CYS A SG 1 ATOM 31 N N . TYR A 1 4 ? 20.805 34.884 29.860 1.00 11.72 ? 4 TYR A N 1 ATOM 32 C CA . TYR A 1 4 ? 21.875 34.086 29.281 1.00 10.84 ? 4 TYR A CA 1 ATOM 33 C C . TYR A 1 4 ? 21.530 32.613 29.363 1.00 13.39 ? 4 TYR A C 1 ATOM 34 O O . TYR A 1 4 ? 21.076 32.127 30.406 1.00 15.28 ? 4 TYR A O 1 ATOM 35 C CB . TYR A 1 4 ? 23.197 34.309 30.009 1.00 13.83 ? 4 TYR A CB 1 ATOM 36 C CG . TYR A 1 4 ? 23.857 35.622 29.695 1.00 11.78 ? 4 TYR A CG 1 ATOM 37 C CD1 . TYR A 1 4 ? 23.590 36.754 30.458 1.00 13.27 ? 4 TYR A CD1 1 ATOM 38 C CD2 . TYR A 1 4 ? 24.745 35.734 28.635 1.00 11.73 ? 4 TYR A CD2 1 ATOM 39 C CE1 . TYR A 1 4 ? 24.204 37.954 30.182 1.00 13.90 ? 4 TYR A CE1 1 ATOM 40 C CE2 . TYR A 1 4 ? 25.357 36.931 28.352 1.00 13.36 ? 4 TYR A CE2 1 ATOM 41 C CZ . TYR A 1 4 ? 25.081 38.036 29.128 1.00 12.73 ? 4 TYR A CZ 1 ATOM 42 O OH . TYR A 1 4 ? 25.794 39.207 29.067 1.00 14.71 ? 4 TYR A OH 1 ATOM 43 N N . TYR A 1 5 ? 21.810 31.896 28.278 1.00 13.08 ? 5 TYR A N 1 ATOM 44 C CA . TYR A 1 5 ? 21.587 30.456 28.209 1.00 14.55 ? 5 TYR A CA 1 ATOM 45 C C . TYR A 1 5 ? 22.872 29.768 27.792 1.00 23.16 ? 5 TYR A C 1 ATOM 46 O O . TYR A 1 5 ? 23.618 30.304 26.973 1.00 18.04 ? 5 TYR A O 1 ATOM 47 C CB . TYR A 1 5 ? 20.482 30.129 27.210 1.00 15.35 ? 5 TYR A CB 1 ATOM 48 C CG . TYR A 1 5 ? 19.152 30.758 27.531 1.00 16.19 ? 5 TYR A CG 1 ATOM 49 C CD1 . TYR A 1 5 ? 18.275 30.156 28.423 1.00 15.72 ? 5 TYR A CD1 1 ATOM 50 C CD2 . TYR A 1 5 ? 18.767 31.952 26.934 1.00 15.46 ? 5 TYR A CD2 1 ATOM 51 C CE1 . TYR A 1 5 ? 17.041 30.726 28.717 1.00 18.17 ? 5 TYR A CE1 1 ATOM 52 C CE2 . TYR A 1 5 ? 17.539 32.530 27.218 1.00 16.03 ? 5 TYR A CE2 1 ATOM 53 C CZ . TYR A 1 5 ? 16.682 31.917 28.110 1.00 17.75 ? 5 TYR A CZ 1 ATOM 54 O OH . TYR A 1 5 ? 15.458 32.486 28.390 1.00 19.41 ? 5 TYR A OH 1 ATOM 55 N N . TYR B 1 1 ? 20.205 28.887 33.870 1.00 24.07 ? 1 TYR B N 1 ATOM 56 C CA . TYR B 1 1 ? 20.269 30.154 33.146 1.00 18.35 ? 1 TYR B CA 1 ATOM 57 C C . TYR B 1 1 ? 19.972 31.312 34.076 1.00 17.61 ? 1 TYR B C 1 ATOM 58 O O . TYR B 1 1 ? 19.447 31.128 35.160 1.00 18.31 ? 1 TYR B O 1 ATOM 59 C CB . TYR B 1 1 ? 19.307 30.145 31.963 1.00 17.37 ? 1 TYR B CB 1 ATOM 60 C CG . TYR B 1 1 ? 17.819 30.245 32.263 1.00 16.80 ? 1 TYR B CG 1 ATOM 61 C CD1 . TYR B 1 1 ? 17.057 29.109 32.515 1.00 19.27 ? 1 TYR B CD1 1 ATOM 62 C CD2 . TYR B 1 1 ? 17.166 31.466 32.210 1.00 18.08 ? 1 TYR B CD2 1 ATOM 63 C CE1 . TYR B 1 1 ? 15.690 29.200 32.749 1.00 17.55 ? 1 TYR B CE1 1 ATOM 64 C CE2 . TYR B 1 1 ? 15.807 31.568 32.435 1.00 18.52 ? 1 TYR B CE2 1 ATOM 65 C CZ . TYR B 1 1 ? 15.075 30.433 32.708 1.00 18.65 ? 1 TYR B CZ 1 ATOM 66 O OH . TYR B 1 1 ? 13.726 30.534 32.937 1.00 22.14 ? 1 TYR B OH 1 ATOM 67 N N . TYR B 1 2 ? 20.325 32.527 33.678 1.00 14.33 ? 2 TYR B N 1 ATOM 68 C CA . TYR B 1 2 ? 20.134 33.644 34.586 1.00 15.79 ? 2 TYR B CA 1 ATOM 69 C C . TYR B 1 2 ? 19.723 34.870 33.795 1.00 16.01 ? 2 TYR B C 1 ATOM 70 O O . TYR B 1 2 ? 20.043 35.008 32.609 1.00 15.05 ? 2 TYR B O 1 ATOM 71 C CB . TYR B 1 2 ? 21.391 33.921 35.430 1.00 15.57 ? 2 TYR B CB 1 ATOM 72 C CG . TYR B 1 2 ? 22.672 34.065 34.641 1.00 15.26 ? 2 TYR B CG 1 ATOM 73 C CD1 . TYR B 1 2 ? 23.294 32.953 34.084 1.00 18.98 ? 2 TYR B CD1 1 ATOM 74 C CD2 . TYR B 1 2 ? 23.269 35.304 34.479 1.00 23.79 ? 2 TYR B CD2 1 ATOM 75 C CE1 . TYR B 1 2 ? 24.464 33.077 33.362 1.00 22.62 ? 2 TYR B CE1 1 ATOM 76 C CE2 . TYR B 1 2 ? 24.451 35.439 33.760 1.00 22.05 ? 2 TYR B CE2 1 ATOM 77 C CZ . TYR B 1 2 ? 25.038 34.320 33.209 1.00 24.27 ? 2 TYR B CZ 1 ATOM 78 O OH . TYR B 1 2 ? 26.207 34.437 32.491 1.00 31.61 ? 2 TYR B OH 1 ATOM 79 N N . CYS B 1 3 ? 18.992 35.749 34.459 1.00 13.01 ? 3 CYS B N 1 ATOM 80 C CA . CYS B 1 3 ? 18.368 36.876 33.790 1.00 13.19 ? 3 CYS B CA 1 ATOM 81 C C . CYS B 1 3 ? 18.700 38.144 34.545 1.00 14.95 ? 3 CYS B C 1 ATOM 82 O O . CYS B 1 3 ? 18.657 38.175 35.774 1.00 15.45 ? 3 CYS B O 1 ATOM 83 C CB . CYS B 1 3 ? 16.846 36.738 33.713 1.00 17.25 ? 3 CYS B CB 1 ATOM 84 S SG . CYS B 1 3 ? 16.229 35.264 32.887 1.00 17.99 ? 3 CYS B SG 1 ATOM 85 N N . TYR B 1 4 ? 19.004 39.190 33.801 1.00 11.56 ? 4 TYR B N 1 ATOM 86 C CA . TYR B 1 4 ? 19.218 40.514 34.360 1.00 13.36 ? 4 TYR B CA 1 ATOM 87 C C . TYR B 1 4 ? 17.928 41.302 34.269 1.00 15.96 ? 4 TYR B C 1 ATOM 88 O O . TYR B 1 4 ? 17.367 41.449 33.179 1.00 13.76 ? 4 TYR B O 1 ATOM 89 C CB . TYR B 1 4 ? 20.318 41.262 33.614 1.00 14.90 ? 4 TYR B CB 1 ATOM 90 C CG . TYR B 1 4 ? 21.717 40.792 33.877 1.00 13.98 ? 4 TYR B CG 1 ATOM 91 C CD1 . TYR B 1 4 ? 22.265 39.752 33.147 1.00 17.31 ? 4 TYR B CD1 1 ATOM 92 C CD2 . TYR B 1 4 ? 22.506 41.401 34.849 1.00 17.97 ? 4 TYR B CD2 1 ATOM 93 C CE1 . TYR B 1 4 ? 23.561 39.323 33.369 1.00 21.28 ? 4 TYR B CE1 1 ATOM 94 C CE2 . TYR B 1 4 ? 23.813 40.968 35.083 1.00 18.43 ? 4 TYR B CE2 1 ATOM 95 C CZ . TYR B 1 4 ? 24.327 39.931 34.334 1.00 20.11 ? 4 TYR B CZ 1 ATOM 96 O OH . TYR B 1 4 ? 25.621 39.480 34.524 1.00 23.83 ? 4 TYR B OH 1 ATOM 97 N N . TYR B 1 5 ? 17.489 41.833 35.401 1.00 15.08 ? 5 TYR B N 1 ATOM 98 C CA . TYR B 1 5 ? 16.284 42.644 35.467 1.00 16.83 ? 5 TYR B CA 1 ATOM 99 C C . TYR B 1 5 ? 16.574 44.113 35.697 1.00 23.59 ? 5 TYR B C 1 ATOM 100 O O . TYR B 1 5 ? 15.647 44.925 35.580 1.00 26.61 ? 5 TYR B O 1 ATOM 101 C CB . TYR B 1 5 ? 15.373 42.134 36.571 1.00 18.35 ? 5 TYR B CB 1 ATOM 102 C CG . TYR B 1 5 ? 14.738 40.827 36.239 1.00 17.04 ? 5 TYR B CG 1 ATOM 103 C CD1 . TYR B 1 5 ? 13.680 40.759 35.347 1.00 17.43 ? 5 TYR B CD1 1 ATOM 104 C CD2 . TYR B 1 5 ? 15.195 39.645 36.807 1.00 18.41 ? 5 TYR B CD2 1 ATOM 105 C CE1 . TYR B 1 5 ? 13.081 39.552 35.035 1.00 19.38 ? 5 TYR B CE1 1 ATOM 106 C CE2 . TYR B 1 5 ? 14.602 38.436 36.503 1.00 20.06 ? 5 TYR B CE2 1 ATOM 107 C CZ . TYR B 1 5 ? 13.546 38.395 35.613 1.00 19.79 ? 5 TYR B CZ 1 ATOM 108 O OH . TYR B 1 5 ? 12.952 37.196 35.307 1.00 23.73 ? 5 TYR B OH 1 HETATM 109 C C1 . GAL C 2 . ? 26.099 39.717 27.795 1.00 13.65 ? 101 GAL A C1 1 HETATM 110 C C2 . GAL C 2 . ? 26.178 41.244 27.884 1.00 13.08 ? 101 GAL A C2 1 HETATM 111 C C3 . GAL C 2 . ? 26.559 41.864 26.558 1.00 15.48 ? 101 GAL A C3 1 HETATM 112 C C4 . GAL C 2 . ? 27.870 41.230 26.070 1.00 14.18 ? 101 GAL A C4 1 HETATM 113 C C5 . GAL C 2 . ? 27.709 39.707 26.065 1.00 12.77 ? 101 GAL A C5 1 HETATM 114 C C6 . GAL C 2 . ? 28.963 38.951 25.673 1.00 15.62 ? 101 GAL A C6 1 HETATM 115 O O2 . GAL C 2 . ? 24.927 41.773 28.259 1.00 14.75 ? 101 GAL A O2 1 HETATM 116 O O3 . GAL C 2 . ? 26.737 43.290 26.716 1.00 15.24 ? 101 GAL A O3 1 HETATM 117 O O4 . GAL C 2 . ? 28.931 41.606 26.927 1.00 15.89 ? 101 GAL A O4 1 HETATM 118 O O5 . GAL C 2 . ? 27.330 39.200 27.357 1.00 14.34 ? 101 GAL A O5 1 HETATM 119 O O6 . GAL C 2 . ? 28.688 37.563 25.481 1.00 22.87 ? 101 GAL A O6 1 HETATM 120 H H1 . GAL C 2 . ? 25.303 39.387 27.109 1.00 16.39 ? 101 GAL A H1 1 HETATM 121 H H2 . GAL C 2 . ? 26.983 41.501 28.591 1.00 15.70 ? 101 GAL A H2 1 HETATM 122 H H3 . GAL C 2 . ? 25.782 41.671 25.800 1.00 18.58 ? 101 GAL A H3 1 HETATM 123 H H4 . GAL C 2 . ? 28.076 41.554 25.036 1.00 17.03 ? 101 GAL A H4 1 HETATM 124 H H5 . GAL C 2 . ? 26.915 39.445 25.347 1.00 15.33 ? 101 GAL A H5 1 HETATM 125 H H61 . GAL C 2 . ? 29.376 39.347 24.740 1.00 18.76 ? 101 GAL A H61 1 HETATM 126 H H62 . GAL C 2 . ? 29.727 39.041 26.453 1.00 18.76 ? 101 GAL A H62 1 HETATM 127 H HO2 . GAL C 2 . ? 25.087 42.675 28.575 1.00 17.70 ? 101 GAL A HO2 1 HETATM 128 H HO3 . GAL C 2 . ? 27.624 43.415 27.085 1.00 18.30 ? 101 GAL A HO3 1 HETATM 129 H HO4 . GAL C 2 . ? 29.724 41.199 26.542 1.00 19.08 ? 101 GAL A HO4 1 HETATM 130 H HO6 . GAL C 2 . ? 29.051 37.338 24.612 1.00 27.45 ? 101 GAL A HO6 1 HETATM 131 S S . SO4 D 3 . ? 12.803 44.910 32.840 1.00 23.99 ? 102 SO4 A S 1 HETATM 132 O O1 . SO4 D 3 . ? 12.347 44.130 31.689 1.00 22.60 ? 102 SO4 A O1 1 HETATM 133 O O2 . SO4 D 3 . ? 13.997 45.667 32.485 1.00 29.23 ? 102 SO4 A O2 1 HETATM 134 O O3 . SO4 D 3 . ? 13.120 44.028 33.958 1.00 26.70 ? 102 SO4 A O3 1 HETATM 135 O O4 . SO4 D 3 . ? 11.745 45.839 33.264 1.00 25.61 ? 102 SO4 A O4 1 HETATM 136 C C1 . GAL E 2 . ? 26.194 39.610 35.765 1.00 26.00 ? 101 GAL B C1 1 HETATM 137 C C2 . GAL E 2 . ? 27.387 38.637 35.726 1.00 28.20 ? 101 GAL B C2 1 HETATM 138 C C3 . GAL E 2 . ? 28.157 38.682 37.046 1.00 30.93 ? 101 GAL B C3 1 HETATM 139 C C4 . GAL E 2 . ? 28.555 40.124 37.346 1.00 35.30 ? 101 GAL B C4 1 HETATM 140 C C5 . GAL E 2 . ? 27.307 41.004 37.299 1.00 33.02 ? 101 GAL B C5 1 HETATM 141 C C6 . GAL E 2 . ? 27.549 42.491 37.523 1.00 33.38 ? 101 GAL B C6 1 HETATM 142 O O2 . GAL E 2 . ? 26.980 37.301 35.513 1.00 31.70 ? 101 GAL B O2 1 HETATM 143 O O3 . GAL E 2 . ? 29.355 37.915 36.968 1.00 34.15 ? 101 GAL B O3 1 HETATM 144 O O4 . GAL E 2 . ? 29.501 40.570 36.383 1.00 36.33 ? 101 GAL B O4 1 HETATM 145 O O5 . GAL E 2 . ? 26.658 40.899 36.021 1.00 28.50 ? 101 GAL B O5 1 HETATM 146 O O6 . GAL E 2 . ? 28.245 42.705 38.741 1.00 44.14 ? 101 GAL B O6 1 HETATM 147 H H1 . GAL E 2 . ? 25.467 39.290 36.527 1.00 31.20 ? 101 GAL B H1 1 HETATM 148 H H2 . GAL E 2 . ? 28.062 38.980 34.925 1.00 33.84 ? 101 GAL B H2 1 HETATM 149 H H3 . GAL E 2 . ? 27.509 38.297 37.850 1.00 37.12 ? 101 GAL B H3 1 HETATM 150 H H4 . GAL E 2 . ? 28.977 40.185 38.364 1.00 42.36 ? 101 GAL B H4 1 HETATM 151 H H5 . GAL E 2 . ? 26.616 40.671 38.092 1.00 39.63 ? 101 GAL B H5 1 HETATM 152 H H61 . GAL E 2 . ? 26.600 43.035 37.571 1.00 40.06 ? 101 GAL B H61 1 HETATM 153 H H62 . GAL E 2 . ? 28.147 42.913 36.709 1.00 40.06 ? 101 GAL B H62 1 HETATM 154 H HO2 . GAL E 2 . ? 27.785 36.782 35.363 1.00 38.05 ? 101 GAL B HO2 1 HETATM 155 H HO3 . GAL E 2 . ? 29.611 37.903 36.034 1.00 40.98 ? 101 GAL B HO3 1 HETATM 156 H HO4 . GAL E 2 . ? 29.850 41.404 36.737 1.00 43.60 ? 101 GAL B HO4 1 HETATM 157 H HO6 . GAL E 2 . ? 27.833 42.116 39.389 1.00 52.98 ? 101 GAL B HO6 1 HETATM 158 O O . HOH F 4 . ? 31.095 41.836 25.265 1.00 17.07 ? 201 HOH A O 1 HETATM 159 O O . HOH F 4 . ? 15.413 44.697 28.328 1.00 27.83 ? 202 HOH A O 1 HETATM 160 O O . HOH G 4 . ? 27.029 39.988 32.031 1.00 28.21 ? 201 HOH B O 1 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 TYR 1 1 1 TYR TYR A . n A 1 2 TYR 2 2 2 TYR TYR A . n A 1 3 CYS 3 3 3 CYS CYS A . n A 1 4 TYR 4 4 4 TYR TYR A . n A 1 5 TYR 5 5 5 TYR TYR A . n B 1 1 TYR 1 1 1 TYR TYR B . n B 1 2 TYR 2 2 2 TYR TYR B . n B 1 3 CYS 3 3 3 CYS CYS B . n B 1 4 TYR 4 4 4 TYR TYR B . n B 1 5 TYR 5 5 5 TYR TYR B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GAL 1 101 3 GAL GAL A . D 3 SO4 1 102 1 SO4 SO4 A . E 2 GAL 1 101 2 GAL GAL B . F 4 HOH 1 201 1 HOH HOH A . F 4 HOH 2 202 11 HOH HOH A . G 4 HOH 1 201 12 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 960 ? 1 MORE -16 ? 1 'SSA (A^2)' 1690 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2020-10-07 2 'Structure model' 1 1 2020-10-21 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' 4 2 'Structure model' '_citation_author.identifier_ORCID' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.13_2998 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? . 4 # _pdbx_entry_details.entry_id 7C0N _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Ministry of Science and Technology (MoST, China)' China 2018YFA0507602 1 'Ministry of Science and Technology (MoST, China)' China 2019ZX09301-106 2 'National Natural Science Foundation of China (NSFC)' China 21822701 3 # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier GAL 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGalpb GAL 'COMMON NAME' GMML 1.0 b-D-galactopyranose GAL 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Galp GAL 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Gal # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id GAL _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id GAL _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 beta-D-galactopyranose GAL 3 'SULFATE ION' SO4 4 water HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'mass spectrometry' _pdbx_struct_assembly_auth_evidence.details 'The assembly provided by liquid chromatography-mass spectrometry (LC-MS) is monomer.' # _space_group.name_H-M_alt 'F 41 3 2' _space_group.name_Hall 'F 4d 2 3' _space_group.IT_number 210 _space_group.crystal_system cubic _space_group.id 1 # loop_ _space_group_symop.id _space_group_symop.operation_xyz 1 x,y,z 2 x+1/4,-z+1/4,y+1/4 3 x+1/4,z+1/4,-y+1/4 4 z+1/4,y+1/4,-x+1/4 5 -z+1/4,y+1/4,x+1/4 6 -y+1/4,x+1/4,z+1/4 7 y+1/4,-x+1/4,z+1/4 8 z,x,y 9 y,z,x 10 -y,-z,x 11 z,-x,-y 12 -y,z,-x 13 -z,-x,y 14 -z,x,-y 15 y,-z,-x 16 x,-y,-z 17 -x,y,-z 18 -x,-y,z 19 y+1/4,x+1/4,-z+1/4 20 -y+1/4,-x+1/4,-z+1/4 21 z+1/4,-y+1/4,x+1/4 22 -z+1/4,-y+1/4,-x+1/4 23 -x+1/4,z+1/4,y+1/4 24 -x+1/4,-z+1/4,-y+1/4 25 x,y+1/2,z+1/2 26 x+1/4,-z+3/4,y+3/4 27 x+1/4,z+3/4,-y+3/4 28 z+1/4,y+3/4,-x+3/4 29 -z+1/4,y+3/4,x+3/4 30 -y+1/4,x+3/4,z+3/4 31 y+1/4,-x+3/4,z+3/4 32 z,x+1/2,y+1/2 33 y,z+1/2,x+1/2 34 -y,-z+1/2,x+1/2 35 z,-x+1/2,-y+1/2 36 -y,z+1/2,-x+1/2 37 -z,-x+1/2,y+1/2 38 -z,x+1/2,-y+1/2 39 y,-z+1/2,-x+1/2 40 x,-y+1/2,-z+1/2 41 -x,y+1/2,-z+1/2 42 -x,-y+1/2,z+1/2 43 y+1/4,x+3/4,-z+3/4 44 -y+1/4,-x+3/4,-z+3/4 45 z+1/4,-y+3/4,x+3/4 46 -z+1/4,-y+3/4,-x+3/4 47 -x+1/4,z+3/4,y+3/4 48 -x+1/4,-z+3/4,-y+3/4 49 x+1/2,y,z+1/2 50 x+3/4,-z+1/4,y+3/4 51 x+3/4,z+1/4,-y+3/4 52 z+3/4,y+1/4,-x+3/4 53 -z+3/4,y+1/4,x+3/4 54 -y+3/4,x+1/4,z+3/4 55 y+3/4,-x+1/4,z+3/4 56 z+1/2,x,y+1/2 57 y+1/2,z,x+1/2 58 -y+1/2,-z,x+1/2 59 z+1/2,-x,-y+1/2 60 -y+1/2,z,-x+1/2 61 -z+1/2,-x,y+1/2 62 -z+1/2,x,-y+1/2 63 y+1/2,-z,-x+1/2 64 x+1/2,-y,-z+1/2 65 -x+1/2,y,-z+1/2 66 -x+1/2,-y,z+1/2 67 y+3/4,x+1/4,-z+3/4 68 -y+3/4,-x+1/4,-z+3/4 69 z+3/4,-y+1/4,x+3/4 70 -z+3/4,-y+1/4,-x+3/4 71 -x+3/4,z+1/4,y+3/4 72 -x+3/4,-z+1/4,-y+3/4 73 x+1/2,y+1/2,z 74 x+3/4,-z+3/4,y+1/4 75 x+3/4,z+3/4,-y+1/4 76 z+3/4,y+3/4,-x+1/4 77 -z+3/4,y+3/4,x+1/4 78 -y+3/4,x+3/4,z+1/4 79 y+3/4,-x+3/4,z+1/4 80 z+1/2,x+1/2,y 81 y+1/2,z+1/2,x 82 -y+1/2,-z+1/2,x 83 z+1/2,-x+1/2,-y 84 -y+1/2,z+1/2,-x 85 -z+1/2,-x+1/2,y 86 -z+1/2,x+1/2,-y 87 y+1/2,-z+1/2,-x 88 x+1/2,-y+1/2,-z 89 -x+1/2,y+1/2,-z 90 -x+1/2,-y+1/2,z 91 y+3/4,x+3/4,-z+1/4 92 -y+3/4,-x+3/4,-z+1/4 93 z+3/4,-y+3/4,x+1/4 94 -z+3/4,-y+3/4,-x+1/4 95 -x+3/4,z+3/4,y+1/4 96 -x+3/4,-z+3/4,-y+1/4 #