data_7C4U # _entry.id 7C4U # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.339 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 7C4U WWPDB D_1300017030 EMDB EMD-30288 # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'MicroED structure of orthorhombic Vancomycin at 1.2 A resolution' _pdbx_database_related.db_id EMD-30288 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 7C4U _pdbx_database_status.recvd_initial_deposition_date 2020-05-18 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Fan, Q.' 1 0000-0001-9133-8039 'Zhou, H.' 2 0000-0002-6267-1585 'Li, X.' 3 0000-0002-8451-9947 'Wang, J.' 4 0000-0002-1704-9922 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country GE _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Angew.Chem.Int.Ed.Engl. _citation.journal_id_ASTM ACIEAY _citation.journal_id_CSD 0179 _citation.journal_id_ISSN 1521-3773 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 59 _citation.language ? _citation.page_first 15141 _citation.page_last 15146 _citation.title 'Precise Control Over Kinetics of Molecular Assembly: Production of Particles with Tunable Sizes and Crystalline Forms.' _citation.year 2020 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1002/anie.202003922 _citation.pdbx_database_id_PubMed 32432368 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Fan, Q.' 1 ? primary 'Li, L.' 2 ? primary 'Xue, H.' 3 ? primary 'Zhou, H.' 4 ? primary 'Zhao, L.' 5 ? primary 'Liu, J.' 6 ? primary 'Mao, J.' 7 ? primary 'Wu, S.' 8 ? primary 'Zhang, S.' 9 ? primary 'Wu, C.' 10 ? primary 'Li, X.' 11 ? primary 'Zhou, X.' 12 ? primary 'Wang, J.' 13 ? # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 7C4U _cell.details ? _cell.formula_units_Z ? _cell.length_a 20.060 _cell.length_a_esd ? _cell.length_b 33.020 _cell.length_b_esd ? _cell.length_c 41.720 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 8 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7C4U _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 2 21 21' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat Vancomycin 1149.977 2 ? ? ? ? 2 branched man 'vancosamine-(1-2)-beta-D-glucopyranose' 323.340 2 ? ? ? ? 3 non-polymer man 'CHLORIDE ION' 35.453 1 ? ? ? ? 4 water nat water 18.015 50 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(MLU)(OMZ)N(GHP)(GHP)(OMY)(3FG)' _entity_poly.pdbx_seq_one_letter_code_can XXNGGYX _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MLU n 1 2 OMZ n 1 3 ASN n 1 4 GHP n 1 5 GHP n 1 6 OMY n 1 7 3FG n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num 1 _entity_src_nat.pdbx_end_seq_num 7 _entity_src_nat.common_name ? _entity_src_nat.pdbx_organism_scientific 'Amycolatopsis orientalis' _entity_src_nat.pdbx_ncbi_taxonomy_id 31958 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 7C4U _struct_ref.pdbx_db_accession 7C4U _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 7C4U A 1 ? 7 ? 7C4U 1 ? 7 ? 1 7 2 1 7C4U B 1 ? 7 ? 7C4U 1 ? 7 ? 1 7 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 3FG 'L-peptide linking' . '(2S)-amino(3,5-dihydroxyphenyl)ethanoic acid' ? 'C8 H9 N O4' 183.161 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 BGC 'D-saccharide, beta linking' . beta-D-glucopyranose 'beta-D-glucose; D-glucose; glucose' 'C6 H12 O6' 180.156 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 GHP 'D-peptide linking' . '(2R)-amino(4-hydroxyphenyl)ethanoic acid' ? 'C8 H9 N O3' 167.162 HOH non-polymer . WATER ? 'H2 O' 18.015 MLU 'D-peptide linking' . N-methyl-D-leucine ? 'C7 H15 N O2' 145.199 OMY 'L-peptide linking' n '(betaR)-3-chloro-beta-hydroxy-L-tyrosine' ? 'C9 H10 Cl N O4' 231.633 OMZ 'D-peptide linking' . '(betaR)-3-CHLORO-BETA-HYDROXY-D-TYROSINE' ? 'C9 H10 Cl N O4' 231.633 RER 'L-saccharide, alpha linking' . vancosamine '(1R,3S,4S,5S)-3-amino-2,3,6-trideoxy-3-methyl-alpha-L-arabino-hexopyranose' 'C7 H15 N O3' 161.199 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7C4U _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON CRYSTALLOGRAPHY' _exptl.method_details ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? _exptl_crystal.preparation ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 _diffrn.pdbx_serial_crystal_experiment ? # _diffrn_detector.details ? _diffrn_detector.detector ? _diffrn_detector.diffrn_id 1 _diffrn_detector.type ? _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2019-06-01 _diffrn_detector.pdbx_frequency ? # _reflns_shell.d_res_high 1.20 _reflns_shell.d_res_low 1.30 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 2.70 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all 1907 _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all 75.6 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.740 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 7.45 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_CC_half 0.781 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max 32.720 _refine.B_iso_mean 11.4269 _refine.B_iso_min 4.420 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 7C4U _refine.pdbx_refine_id 'ELECTRON CRYSTALLOGRAPHY' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.2000 _refine.ls_d_res_low 7.5710 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 6839 _refine.ls_number_reflns_R_free 342 _refine.ls_number_reflns_R_work 6497 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 75.1500 _refine.ls_percent_reflns_R_free 5.0000 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2027 _refine.ls_R_factor_R_free 0.2159 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2020 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.350 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct ? _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details 'Random selection' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 24.0000 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.1100 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'ELECTRON CRYSTALLOGRAPHY' _refine_hist.cycle_id final _refine_hist.details ? _refine_hist.d_res_high 1.20 _refine_hist.d_res_low 7.57 _refine_hist.number_atoms_solvent 50 _refine_hist.number_atoms_total 253 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total 14 _refine_hist.pdbx_B_iso_mean_ligand 10.18 _refine_hist.pdbx_B_iso_mean_solvent 18.86 _refine_hist.pdbx_number_atoms_protein ? _refine_hist.pdbx_number_atoms_nucleic_acid ? _refine_hist.pdbx_number_atoms_ligand 43 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'ELECTRON CRYSTALLOGRAPHY' 1.2 1.5097 . . 168 3202 76.0000 5 . . 0.2740 0.0000 0.2408 . . . . . . . . . . . 'ELECTRON CRYSTALLOGRAPHY' 1.5097 7.5709 . . 174 3295 75.0000 5 . . 0.1998 0.0000 0.1905 . . . . . . . . . . . # _struct.entry_id 7C4U _struct.title 'MicroED structure of orthorhombic Vancomycin at 1.2 A resolution' _struct.pdbx_descriptor Vancomycin _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7C4U _struct_keywords.text 'MicroED, Vancomycin, superbacteria, Antibiotic' _struct_keywords.pdbx_keywords ANTIBIOTIC # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 4 ? G N N 4 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A MLU 1 C ? ? ? 1_555 A OMZ 2 N ? ? A MLU 1 A OMZ 2 1_555 ? ? ? ? ? ? ? 1.319 ? ? covale2 covale both ? A OMZ 2 C ? ? ? 1_555 A ASN 3 N ? ? A OMZ 2 A ASN 3 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale3 covale none ? A OMZ 2 OH ? ? ? 1_555 A GHP 4 C5 ? ? A OMZ 2 A GHP 4 1_555 ? ? ? ? ? ? ? 1.374 ? ? covale4 covale both ? A ASN 3 C ? ? ? 1_555 A GHP 4 N ? ? A ASN 3 A GHP 4 1_555 ? ? ? ? ? ? ? 1.320 ? ? covale5 covale both ? A GHP 4 C ? ? ? 1_555 A GHP 5 N ? ? A GHP 4 A GHP 5 1_555 ? ? ? ? ? ? ? 1.314 ? ? covale6 covale none ? A GHP 4 C3 ? ? ? 1_555 A OMY 6 OCZ ? ? A GHP 4 A OMY 6 1_555 ? ? ? ? ? ? ? 1.372 ? ? covale7 covale one ? A GHP 4 O4 ? ? ? 1_555 C BGC . C1 ? ? A GHP 4 C BGC 1 1_555 ? ? ? ? ? ? ? 1.371 sing ? covale8 covale both ? A GHP 5 C ? ? ? 1_555 A OMY 6 N ? ? A GHP 5 A OMY 6 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale9 covale none ? A GHP 5 C3 ? ? ? 1_555 A 3FG 7 CG1 ? ? A GHP 5 A 3FG 7 1_555 ? ? ? ? ? ? ? 1.487 ? ? covale10 covale both ? A OMY 6 C ? ? ? 1_555 A 3FG 7 N ? ? A OMY 6 A 3FG 7 1_555 ? ? ? ? ? ? ? 1.318 ? ? covale11 covale both ? B MLU 1 C ? ? ? 1_555 B OMZ 2 N ? ? B MLU 1 B OMZ 2 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale12 covale both ? B OMZ 2 C ? ? ? 1_555 B ASN 3 N ? ? B OMZ 2 B ASN 3 1_555 ? ? ? ? ? ? ? 1.311 ? ? covale13 covale none ? B OMZ 2 OH ? ? ? 1_555 B GHP 4 C5 ? ? B OMZ 2 B GHP 4 1_555 ? ? ? ? ? ? ? 1.369 ? ? covale14 covale both ? B ASN 3 C ? ? ? 1_555 B GHP 4 N ? ? B ASN 3 B GHP 4 1_555 ? ? ? ? ? ? ? 1.314 ? ? covale15 covale both ? B GHP 4 C ? ? ? 1_555 B GHP 5 N ? ? B GHP 4 B GHP 5 1_555 ? ? ? ? ? ? ? 1.309 ? ? covale16 covale none ? B GHP 4 C3 ? ? ? 1_555 B OMY 6 OCZ ? ? B GHP 4 B OMY 6 1_555 ? ? ? ? ? ? ? 1.374 ? ? covale17 covale one ? B GHP 4 O4 ? ? ? 1_555 D BGC . C1 ? ? B GHP 4 D BGC 1 1_555 ? ? ? ? ? ? ? 1.376 sing ? covale18 covale both ? B GHP 5 C ? ? ? 1_555 B OMY 6 N ? ? B GHP 5 B OMY 6 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale19 covale none ? B GHP 5 C3 ? ? ? 1_555 B 3FG 7 CG1 ? ? B GHP 5 B 3FG 7 1_555 ? ? ? ? ? ? ? 1.490 ? ? covale20 covale both ? B OMY 6 C ? ? ? 1_555 B 3FG 7 N ? ? B OMY 6 B 3FG 7 1_555 ? ? ? ? ? ? ? 1.311 ? ? covale21 covale both ? C BGC . O2 ? ? ? 1_555 C RER . C1 ? ? C BGC 1 C RER 2 1_555 ? ? ? ? ? ? ? 1.374 ? ? covale22 covale both ? D BGC . O2 ? ? ? 1_555 D RER . C1 ? ? D BGC 1 D RER 2 1_555 ? ? ? ? ? ? ? 1.373 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 GHP 5 A . ? GHP 5 A OMY 6 A ? OMY 6 A 1 4.80 2 GHP 5 B . ? GHP 5 B OMY 6 B ? OMY 6 B 1 -5.84 # _atom_sites.entry_id 7C4U _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.049850 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.030285 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.023969 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C CL N O # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_alt_id _atom_site.label_comp_id _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.label_seq_id _atom_site.pdbx_PDB_ins_code _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_seq_id _atom_site.auth_comp_id _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.pdbx_PDB_model_num HETATM 1 N N . MLU A 1 1 ? -3.746 -7.259 12.032 1.00 9.70 ? 1 MLU A N 1 HETATM 2 C CN . MLU A 1 1 ? -3.225 -7.333 10.656 1.00 10.49 ? 1 MLU A CN 1 HETATM 3 C CA . MLU A 1 1 ? -3.772 -5.861 12.458 1.00 9.07 ? 1 MLU A CA 1 HETATM 4 C C . MLU A 1 1 ? -4.454 -4.990 11.433 1.00 7.97 ? 1 MLU A C 1 HETATM 5 O O . MLU A 1 1 ? -5.713 -5.138 11.277 1.00 8.90 ? 1 MLU A O 1 HETATM 6 C CB . MLU A 1 1 ? -4.599 -5.785 13.711 1.00 12.33 ? 1 MLU A CB 1 HETATM 7 C CG . MLU A 1 1 ? -4.189 -4.571 14.510 1.00 26.77 ? 1 MLU A CG 1 HETATM 8 C CD1 . MLU A 1 1 ? -5.343 -4.225 15.439 1.00 25.77 ? 1 MLU A CD1 1 HETATM 9 C CD2 . MLU A 1 1 ? -2.995 -4.983 15.363 1.00 32.72 ? 1 MLU A CD2 1 HETATM 10 N N . OMZ A 1 2 ? -3.734 -4.126 10.744 1.00 7.60 ? 2 OMZ A N 1 HETATM 11 C CA . OMZ A 1 2 ? -4.329 -3.324 9.734 1.00 9.50 ? 2 OMZ A CA 1 HETATM 12 C C . OMZ A 1 2 ? -3.814 -1.899 9.793 1.00 11.62 ? 2 OMZ A C 1 HETATM 13 O O . OMZ A 1 2 ? -4.214 -1.156 8.845 1.00 11.37 ? 2 OMZ A O 1 HETATM 14 C CB . OMZ A 1 2 ? -4.012 -3.895 8.347 1.00 9.47 ? 2 OMZ A CB 1 HETATM 15 O OC . OMZ A 1 2 ? -4.359 -5.224 8.235 1.00 9.00 ? 2 OMZ A OC 1 HETATM 16 C CG . OMZ A 1 2 ? -2.561 -3.698 8.066 1.00 8.45 ? 2 OMZ A CG 1 HETATM 17 C CD1 . OMZ A 1 2 ? -2.146 -2.714 7.205 1.00 8.23 ? 2 OMZ A CD1 1 HETATM 18 C CD2 . OMZ A 1 2 ? -1.633 -4.529 8.676 1.00 9.87 ? 2 OMZ A CD2 1 HETATM 19 C CE1 . OMZ A 1 2 ? -0.812 -2.551 6.966 1.00 8.81 ? 2 OMZ A CE1 1 HETATM 20 CL CL . OMZ A 1 2 ? -0.296 -1.314 5.916 1.00 16.54 ? 2 OMZ A CL 1 HETATM 21 C CE2 . OMZ A 1 2 ? -0.296 -4.355 8.437 1.00 7.78 ? 2 OMZ A CE2 1 HETATM 22 C CZ . OMZ A 1 2 ? 0.121 -3.340 7.578 1.00 8.01 ? 2 OMZ A CZ 1 HETATM 23 O OH . OMZ A 1 2 ? 1.428 -3.161 7.349 1.00 8.25 ? 2 OMZ A OH 1 ATOM 24 N N . ASN A 1 3 ? -3.016 -1.543 10.787 1.00 7.52 ? 3 ASN A N 1 ATOM 25 C CA . ASN A 1 3 ? -2.825 -0.161 11.139 1.00 8.28 ? 3 ASN A CA 1 ATOM 26 C C . ASN A 1 3 ? -1.484 0.340 10.705 1.00 6.98 ? 3 ASN A C 1 ATOM 27 O O . ASN A 1 3 ? -1.395 1.337 10.002 1.00 8.75 ? 3 ASN A O 1 ATOM 28 C CB . ASN A 1 3 ? -2.950 -0.001 12.647 1.00 9.84 ? 3 ASN A CB 1 ATOM 29 C CG . ASN A 1 3 ? -4.322 -0.368 13.143 1.00 14.66 ? 3 ASN A CG 1 ATOM 30 O OD1 . ASN A 1 3 ? -5.314 -0.157 12.451 1.00 13.09 ? 3 ASN A OD1 1 ATOM 31 N ND2 . ASN A 1 3 ? -4.390 -0.934 14.342 1.00 17.82 ? 3 ASN A ND2 1 HETATM 32 N N . GHP A 1 4 ? -0.436 -0.346 11.123 1.00 6.75 ? 4 GHP A N 1 HETATM 33 C CA . GHP A 1 4 ? 0.889 0.196 10.948 1.00 8.34 ? 4 GHP A CA 1 HETATM 34 C C . GHP A 1 4 ? 1.605 0.147 12.242 1.00 7.50 ? 4 GHP A C 1 HETATM 35 O O . GHP A 1 4 ? 1.612 -0.871 12.894 1.00 7.18 ? 4 GHP A O 1 HETATM 36 C C1 . GHP A 1 4 ? 1.675 -0.615 10.023 1.00 5.32 ? 4 GHP A C1 1 HETATM 37 C C2 . GHP A 1 4 ? 3.034 -0.454 9.990 1.00 7.74 ? 4 GHP A C2 1 HETATM 38 C C3 . GHP A 1 4 ? 3.780 -1.191 9.124 1.00 5.86 ? 4 GHP A C3 1 HETATM 39 C C4 . GHP A 1 4 ? 3.164 -2.110 8.319 1.00 6.42 ? 4 GHP A C4 1 HETATM 40 O O4 . GHP A 1 4 ? 3.893 -2.840 7.481 1.00 7.60 ? 4 GHP A O4 1 HETATM 41 C C5 . GHP A 1 4 ? 1.801 -2.284 8.339 1.00 7.64 ? 4 GHP A C5 1 HETATM 42 C C6 . GHP A 1 4 ? 1.071 -1.525 9.213 1.00 7.69 ? 4 GHP A C6 1 HETATM 43 N N . GHP A 1 5 ? 2.180 1.261 12.634 1.00 8.36 ? 5 GHP A N 1 HETATM 44 C CA . GHP A 1 5 ? 3.239 1.235 13.579 1.00 9.13 ? 5 GHP A CA 1 HETATM 45 C C . GHP A 1 5 ? 4.247 2.291 13.105 1.00 7.49 ? 5 GHP A C 1 HETATM 46 O O . GHP A 1 5 ? 3.840 3.142 12.338 1.00 7.51 ? 5 GHP A O 1 HETATM 47 C C1 . GHP A 1 5 ? 2.891 1.651 14.943 1.00 6.42 ? 5 GHP A C1 1 HETATM 48 C C2 . GHP A 1 5 ? 3.146 0.761 15.966 1.00 8.53 ? 5 GHP A C2 1 HETATM 49 C C3 . GHP A 1 5 ? 2.930 1.115 17.265 1.00 11.94 ? 5 GHP A C3 1 HETATM 50 C C4 . GHP A 1 5 ? 2.471 2.384 17.553 1.00 9.81 ? 5 GHP A C4 1 HETATM 51 O O4 . GHP A 1 5 ? 2.234 2.724 18.855 1.00 18.98 ? 5 GHP A O4 1 HETATM 52 C C5 . GHP A 1 5 ? 2.216 3.305 16.541 1.00 11.04 ? 5 GHP A C5 1 HETATM 53 C C6 . GHP A 1 5 ? 2.446 2.931 15.230 1.00 8.09 ? 5 GHP A C6 1 HETATM 54 N N . OMY A 1 6 ? 5.504 2.237 13.526 1.00 7.58 ? 6 OMY A N 1 HETATM 55 C CA . OMY A 1 6 ? 6.058 1.156 14.362 1.00 9.49 ? 6 OMY A CA 1 HETATM 56 O OCZ . OMY A 1 6 ? 5.144 -1.144 8.988 1.00 6.81 ? 6 OMY A OCZ 1 HETATM 57 C CE2 . OMY A 1 6 ? 6.396 0.550 10.166 1.00 8.22 ? 6 OMY A CE2 1 HETATM 58 C CE1 . OMY A 1 6 ? 5.664 -1.405 11.367 1.00 5.99 ? 6 OMY A CE1 1 HETATM 59 C CZ . OMY A 1 6 ? 5.756 -0.666 10.198 1.00 7.18 ? 6 OMY A CZ 1 HETATM 60 C CG . OMY A 1 6 ? 6.881 0.236 12.489 1.00 7.35 ? 6 OMY A CG 1 HETATM 61 C CD2 . OMY A 1 6 ? 6.965 1.000 11.334 1.00 6.62 ? 6 OMY A CD2 1 HETATM 62 C CD1 . OMY A 1 6 ? 6.229 -0.961 12.530 1.00 8.21 ? 6 OMY A CD1 1 HETATM 63 C CB . OMY A 1 6 ? 7.387 0.703 13.816 1.00 7.98 ? 6 OMY A CB 1 HETATM 64 CL CL . OMY A 1 6 ? 4.838 -2.953 11.405 1.00 9.57 ? 6 OMY A CL 1 HETATM 65 O O . OMY A 1 6 ? 6.217 2.899 15.993 1.00 10.95 ? 6 OMY A O 1 HETATM 66 C C . OMY A 1 6 ? 6.118 1.688 15.759 1.00 9.17 ? 6 OMY A C 1 HETATM 67 O ODE . OMY A 1 6 ? 8.190 1.828 13.606 1.00 6.86 ? 6 OMY A ODE 1 HETATM 68 N N . 3FG A 1 7 ? 6.026 0.775 16.705 1.00 8.52 ? 7 3FG A N 1 HETATM 69 O OD1 . 3FG A 1 7 ? 1.377 -0.611 18.414 1.00 10.99 ? 7 3FG A OD1 1 HETATM 70 C CD1 . 3FG A 1 7 ? 2.665 -0.672 18.805 1.00 9.15 ? 7 3FG A CD1 1 HETATM 71 C CG1 . 3FG A 1 7 ? 3.565 0.218 18.266 1.00 11.64 ? 7 3FG A CG1 1 HETATM 72 C CZ . 3FG A 1 7 ? 3.037 -1.624 19.735 1.00 14.41 ? 7 3FG A CZ 1 HETATM 73 C CD2 . 3FG A 1 7 ? 4.374 -1.642 20.095 1.00 12.41 ? 7 3FG A CD2 1 HETATM 74 O OD2 . 3FG A 1 7 ? 4.793 -2.558 21.006 1.00 14.03 ? 7 3FG A OD2 1 HETATM 75 C CG2 . 3FG A 1 7 ? 5.296 -0.768 19.551 1.00 10.71 ? 7 3FG A CG2 1 HETATM 76 C CB . 3FG A 1 7 ? 4.879 0.174 18.646 1.00 8.82 ? 7 3FG A CB 1 HETATM 77 C CA . 3FG A 1 7 ? 5.803 1.151 18.046 1.00 13.95 ? 7 3FG A CA 1 HETATM 78 C C . 3FG A 1 7 ? 7.102 1.255 18.896 1.00 11.19 ? 7 3FG A C 1 HETATM 79 O O . 3FG A 1 7 ? 8.125 0.722 18.436 1.00 13.90 ? 7 3FG A O 1 HETATM 80 O OXT . 3FG A 1 7 ? 6.980 1.912 19.960 1.00 13.65 ? 7 3FG A OXT 1 HETATM 81 N N . MLU B 1 1 ? 16.035 6.151 13.805 1.00 11.07 ? 1 MLU B N 1 HETATM 82 C CN . MLU B 1 1 ? 16.488 6.393 12.447 1.00 10.18 ? 1 MLU B CN 1 HETATM 83 C CA . MLU B 1 1 ? 14.622 6.496 13.917 1.00 10.71 ? 1 MLU B CA 1 HETATM 84 C C . MLU B 1 1 ? 13.737 5.768 12.893 1.00 9.89 ? 1 MLU B C 1 HETATM 85 O O . MLU B 1 1 ? 13.928 4.513 12.718 1.00 8.97 ? 1 MLU B O 1 HETATM 86 C CB . MLU B 1 1 ? 14.171 6.077 15.306 1.00 13.95 ? 1 MLU B CB 1 HETATM 87 C CG . MLU B 1 1 ? 12.821 6.650 15.661 1.00 20.54 ? 1 MLU B CG 1 HETATM 88 C CD1 . MLU B 1 1 ? 12.909 8.167 15.594 1.00 23.81 ? 1 MLU B CD1 1 HETATM 89 C CD2 . MLU B 1 1 ? 12.562 6.266 17.108 1.00 22.31 ? 1 MLU B CD2 1 HETATM 90 N N . OMZ B 1 2 ? 12.840 6.482 12.232 1.00 9.21 ? 2 OMZ B N 1 HETATM 91 C CA . OMZ B 1 2 ? 11.859 5.840 11.437 1.00 6.88 ? 2 OMZ B CA 1 HETATM 92 C C . OMZ B 1 2 ? 10.594 6.595 11.462 1.00 7.45 ? 2 OMZ B C 1 HETATM 93 O O . OMZ B 1 2 ? 10.733 7.839 11.665 1.00 8.76 ? 2 OMZ B O 1 HETATM 94 C CB . OMZ B 1 2 ? 12.331 5.769 9.974 1.00 8.97 ? 2 OMZ B CB 1 HETATM 95 O OC . OMZ B 1 2 ? 12.511 6.990 9.426 1.00 8.64 ? 2 OMZ B OC 1 HETATM 96 C CG . OMZ B 1 2 ? 11.342 4.989 9.199 1.00 9.06 ? 2 OMZ B CG 1 HETATM 97 C CD1 . OMZ B 1 2 ? 11.010 3.713 9.580 1.00 6.37 ? 2 OMZ B CD1 1 HETATM 98 C CD2 . OMZ B 1 2 ? 10.764 5.559 8.074 1.00 8.92 ? 2 OMZ B CD2 1 HETATM 99 C CE1 . OMZ B 1 2 ? 10.097 3.023 8.857 1.00 6.34 ? 2 OMZ B CE1 1 HETATM 100 CL CL . OMZ B 1 2 ? 9.678 1.485 9.344 1.00 11.58 ? 2 OMZ B CL 1 HETATM 101 C CE2 . OMZ B 1 2 ? 9.848 4.856 7.341 1.00 9.25 ? 2 OMZ B CE2 1 HETATM 102 C CZ . OMZ B 1 2 ? 9.504 3.573 7.731 1.00 6.49 ? 2 OMZ B CZ 1 HETATM 103 O OH . OMZ B 1 2 ? 8.621 2.894 7.021 1.00 7.73 ? 2 OMZ B OH 1 ATOM 104 N N . ASN B 1 3 ? 9.454 5.952 11.386 1.00 8.70 ? 3 ASN B N 1 ATOM 105 C CA . ASN B 1 3 ? 8.229 6.662 11.164 1.00 8.11 ? 3 ASN B CA 1 ATOM 106 C C . ASN B 1 3 ? 7.222 5.549 11.099 1.00 7.64 ? 3 ASN B C 1 ATOM 107 O O . ASN B 1 3 ? 7.349 4.544 11.781 1.00 8.42 ? 3 ASN B O 1 ATOM 108 C CB . ASN B 1 3 ? 8.357 7.399 9.826 1.00 8.74 ? 3 ASN B CB 1 ATOM 109 C CG . ASN B 1 3 ? 7.333 8.491 9.647 1.00 8.43 ? 3 ASN B CG 1 ATOM 110 O OD1 . ASN B 1 3 ? 6.144 8.261 9.720 1.00 7.95 ? 3 ASN B OD1 1 ATOM 111 N ND2 . ASN B 1 3 ? 7.810 9.707 9.427 1.00 13.72 ? 3 ASN B ND2 1 HETATM 112 N N . GHP B 1 4 ? 6.223 5.710 10.260 1.00 7.78 ? 4 GHP B N 1 HETATM 113 C CA . GHP B 1 4 ? 5.273 4.666 10.094 1.00 7.02 ? 4 GHP B CA 1 HETATM 114 C C . GHP B 1 4 ? 4.014 5.310 9.685 1.00 5.38 ? 4 GHP B C 1 HETATM 115 O O . GHP B 1 4 ? 4.003 6.221 8.872 1.00 6.08 ? 4 GHP B O 1 HETATM 116 C C1 . GHP B 1 4 ? 5.675 3.813 8.955 1.00 6.54 ? 4 GHP B C1 1 HETATM 117 C C2 . GHP B 1 4 ? 4.732 3.073 8.295 1.00 7.42 ? 4 GHP B C2 1 HETATM 118 C C3 . GHP B 1 4 ? 5.078 2.293 7.211 1.00 6.99 ? 4 GHP B C3 1 HETATM 119 C C4 . GHP B 1 4 ? 6.384 2.274 6.793 1.00 9.81 ? 4 GHP B C4 1 HETATM 120 O O4 . GHP B 1 4 ? 6.757 1.495 5.713 1.00 7.93 ? 4 GHP B O4 1 HETATM 121 C C5 . GHP B 1 4 ? 7.328 3.005 7.457 1.00 6.39 ? 4 GHP B C5 1 HETATM 122 C C6 . GHP B 1 4 ? 6.968 3.772 8.530 1.00 7.36 ? 4 GHP B C6 1 HETATM 123 N N . GHP B 1 5 ? 2.942 4.879 10.301 1.00 7.33 ? 5 GHP B N 1 HETATM 124 C CA . GHP B 1 5 ? 1.678 5.178 9.788 1.00 5.68 ? 5 GHP B CA 1 HETATM 125 C C . GHP B 1 5 ? 0.826 3.929 10.146 1.00 6.96 ? 5 GHP B C 1 HETATM 126 O O . GHP B 1 5 ? 1.127 3.301 11.146 1.00 6.22 ? 5 GHP B O 1 HETATM 127 C C1 . GHP B 1 5 ? 1.018 6.304 10.480 1.00 4.42 ? 5 GHP B C1 1 HETATM 128 C C2 . GHP B 1 5 ? 0.338 7.218 9.722 1.00 5.44 ? 5 GHP B C2 1 HETATM 129 C C3 . GHP B 1 5 ? -0.369 8.221 10.329 1.00 6.55 ? 5 GHP B C3 1 HETATM 130 C C4 . GHP B 1 5 ? -0.365 8.281 11.708 1.00 7.48 ? 5 GHP B C4 1 HETATM 131 O O4 . GHP B 1 5 ? -1.022 9.260 12.315 1.00 7.34 ? 5 GHP B O4 1 HETATM 132 C C5 . GHP B 1 5 ? 0.313 7.390 12.488 1.00 7.23 ? 5 GHP B C5 1 HETATM 133 C C6 . GHP B 1 5 ? 0.992 6.384 11.862 1.00 5.84 ? 5 GHP B C6 1 HETATM 134 N N . OMY B 1 6 ? -0.208 3.610 9.385 1.00 7.63 ? 6 OMY B N 1 HETATM 135 C CA . OMY B 1 6 ? -0.696 4.429 8.274 1.00 6.30 ? 6 OMY B CA 1 HETATM 136 O OCZ . OMY B 1 6 ? 4.295 1.658 6.277 1.00 8.75 ? 6 OMY B OCZ 1 HETATM 137 C CE2 . OMY B 1 6 ? 2.014 1.233 7.059 1.00 9.62 ? 6 OMY B CE2 1 HETATM 138 C CE1 . OMY B 1 6 ? 2.589 3.384 6.127 1.00 9.38 ? 6 OMY B CE1 1 HETATM 139 C CZ . OMY B 1 6 ? 2.942 2.100 6.496 1.00 10.04 ? 6 OMY B CZ 1 HETATM 140 C CG . OMY B 1 6 ? 0.390 2.984 6.876 1.00 8.41 ? 6 OMY B CG 1 HETATM 141 C CD2 . OMY B 1 6 ? 0.720 1.677 7.253 1.00 7.98 ? 6 OMY B CD2 1 HETATM 142 C CD1 . OMY B 1 6 ? 1.316 3.841 6.328 1.00 10.02 ? 6 OMY B CD1 1 HETATM 143 C CB . OMY B 1 6 ? -0.992 3.561 7.098 1.00 9.17 ? 6 OMY B CB 1 HETATM 144 CL CL . OMY B 1 6 ? 3.757 4.492 5.416 1.00 11.05 ? 6 OMY B CL 1 HETATM 145 O O . OMY B 1 6 ? -2.560 4.648 9.760 1.00 9.43 ? 6 OMY B O 1 HETATM 146 C C . OMY B 1 6 ? -1.886 5.138 8.847 1.00 7.14 ? 6 OMY B C 1 HETATM 147 O ODE . OMY B 1 6 ? -1.914 2.549 7.447 1.00 9.83 ? 6 OMY B ODE 1 HETATM 148 N N . 3FG B 1 7 ? -2.130 6.331 8.361 1.00 6.39 ? 7 3FG B N 1 HETATM 149 O OD1 . 3FG B 1 7 ? 0.349 10.668 9.684 1.00 6.69 ? 7 3FG B OD1 1 HETATM 150 C CD1 . 3FG B 1 7 ? -0.840 10.290 9.186 1.00 7.27 ? 7 3FG B CD1 1 HETATM 151 C CG1 . 3FG B 1 7 ? -1.243 9.007 9.413 1.00 6.22 ? 7 3FG B CG1 1 HETATM 152 C CZ . 3FG B 1 7 ? -1.590 11.198 8.442 1.00 8.89 ? 7 3FG B CZ 1 HETATM 153 C CD2 . 3FG B 1 7 ? -2.799 10.739 7.945 1.00 8.61 ? 7 3FG B CD2 1 HETATM 154 O OD2 . 3FG B 1 7 ? -3.583 11.578 7.218 1.00 9.69 ? 7 3FG B OD2 1 HETATM 155 C CG2 . 3FG B 1 7 ? -3.237 9.458 8.168 1.00 7.83 ? 7 3FG B CG2 1 HETATM 156 C CB . 3FG B 1 7 ? -2.464 8.592 8.912 1.00 5.62 ? 7 3FG B CB 1 HETATM 157 C CA . 3FG B 1 7 ? -2.919 7.216 9.145 1.00 6.81 ? 7 3FG B CA 1 HETATM 158 C C . 3FG B 1 7 ? -4.438 7.123 8.886 1.00 8.39 ? 7 3FG B C 1 HETATM 159 O O . 3FG B 1 7 ? -4.799 6.567 7.837 1.00 9.86 ? 7 3FG B O 1 HETATM 160 O OXT . 3FG B 1 7 ? -5.163 7.611 9.790 1.00 9.56 ? 7 3FG B OXT 1 HETATM 161 C C2 . BGC C 2 . ? 5.400 -3.308 5.781 1.00 8.61 ? 1 BGC C C2 1 HETATM 162 C C3 . BGC C 2 . ? 6.151 -2.609 4.656 1.00 9.91 ? 1 BGC C C3 1 HETATM 163 C C4 . BGC C 2 . ? 5.092 -2.005 3.714 1.00 11.37 ? 1 BGC C C4 1 HETATM 164 C C5 . BGC C 2 . ? 4.344 -0.961 4.555 1.00 10.38 ? 1 BGC C C5 1 HETATM 165 C C6 . BGC C 2 . ? 3.347 -0.253 3.614 1.00 18.99 ? 1 BGC C C6 1 HETATM 166 C C1 . BGC C 2 . ? 4.548 -2.235 6.440 1.00 8.54 ? 1 BGC C C1 1 HETATM 167 O O2 . BGC C 2 . ? 6.346 -3.754 6.696 1.00 6.92 ? 1 BGC C O2 1 HETATM 168 O O3 . BGC C 2 . ? 6.860 -3.523 3.893 1.00 10.00 ? 1 BGC C O3 1 HETATM 169 O O4 . BGC C 2 . ? 5.711 -1.270 2.724 1.00 11.78 ? 1 BGC C O4 1 HETATM 170 O O5 . BGC C 2 . ? 3.662 -1.654 5.552 1.00 10.12 ? 1 BGC C O5 1 HETATM 171 O O6 . BGC C 2 . ? 2.453 -1.205 3.145 1.00 13.27 ? 1 BGC C O6 1 HETATM 172 C C1 . RER C 2 . ? 6.382 -5.124 6.789 1.00 6.38 ? 2 RER C C1 1 HETATM 173 C C2 . RER C 2 . ? 7.659 -5.511 7.554 1.00 6.37 ? 2 RER C C2 1 HETATM 174 C C3 . RER C 2 . ? 7.533 -5.452 9.109 1.00 9.45 ? 2 RER C C3 1 HETATM 175 N N3 . RER C 2 . ? 8.567 -6.297 9.677 1.00 10.39 ? 2 RER C N3 1 HETATM 176 C C3A . RER C 2 . ? 7.663 -4.005 9.636 1.00 9.52 ? 2 RER C C3A 1 HETATM 177 C C4 . RER C 2 . ? 6.175 -6.043 9.526 1.00 8.71 ? 2 RER C C4 1 HETATM 178 O O4 . RER C 2 . ? 6.265 -7.391 9.215 1.00 8.96 ? 2 RER C O4 1 HETATM 179 C C5 . RER C 2 . ? 5.092 -5.363 8.728 1.00 8.22 ? 2 RER C C5 1 HETATM 180 O O5 . RER C 2 . ? 5.210 -5.598 7.359 1.00 6.51 ? 2 RER C O5 1 HETATM 181 C C5A . RER C 2 . ? 3.753 -5.909 9.114 1.00 6.97 ? 2 RER C C5A 1 HETATM 182 C C2 . BGC D 2 . ? 7.811 1.187 3.683 1.00 10.29 ? 1 BGC D C2 1 HETATM 183 C C3 . BGC D 2 . ? 8.012 1.857 2.326 1.00 12.23 ? 1 BGC D C3 1 HETATM 184 C C4 . BGC D 2 . ? 6.638 2.179 1.765 1.00 12.81 ? 1 BGC D C4 1 HETATM 185 C C5 . BGC D 2 . ? 5.993 3.160 2.756 1.00 11.40 ? 1 BGC D C5 1 HETATM 186 C C6 . BGC D 2 . ? 4.644 3.589 2.145 1.00 17.91 ? 1 BGC D C6 1 HETATM 187 C C1 . BGC D 2 . ? 7.018 2.194 4.557 1.00 9.48 ? 1 BGC D C1 1 HETATM 188 O O2 . BGC D 2 . ? 9.058 1.045 4.248 1.00 8.43 ? 1 BGC D O2 1 HETATM 189 O O3 . BGC D 2 . ? 8.592 0.991 1.407 1.00 11.70 ? 1 BGC D O3 1 HETATM 190 O O4 . BGC D 2 . ? 6.850 2.868 0.599 1.00 12.47 ? 1 BGC D O4 1 HETATM 191 O O5 . BGC D 2 . ? 5.792 2.482 3.967 1.00 10.37 ? 1 BGC D O5 1 HETATM 192 O O6 . BGC D 2 . ? 3.944 2.453 1.747 1.00 15.43 ? 1 BGC D O6 1 HETATM 193 C C1 . RER D 2 . ? 9.360 -0.291 4.349 1.00 9.10 ? 2 RER D C1 1 HETATM 194 C C2 . RER D 2 . ? 10.894 -0.385 4.448 1.00 11.20 ? 2 RER D C2 1 HETATM 195 C C3 . RER D 2 . ? 11.442 -0.098 5.873 1.00 10.47 ? 2 RER D C3 1 HETATM 196 N N3 . RER D 2 . ? 12.780 -0.628 5.995 1.00 9.73 ? 2 RER D N3 1 HETATM 197 C C3A . RER D 2 . ? 11.489 1.379 6.114 1.00 8.81 ? 2 RER D C3A 1 HETATM 198 C C4 . RER D 2 . ? 10.546 -0.786 6.934 1.00 8.90 ? 2 RER D C4 1 HETATM 199 O O4 . RER D 2 . ? 10.784 -2.155 6.817 1.00 11.02 ? 2 RER D O4 1 HETATM 200 C C5 . RER D 2 . ? 9.102 -0.446 6.652 1.00 9.40 ? 2 RER D C5 1 HETATM 201 O O5 . RER D 2 . ? 8.730 -0.920 5.405 1.00 9.15 ? 2 RER D O5 1 HETATM 202 C C5A . RER D 2 . ? 8.203 -1.139 7.649 1.00 8.93 ? 2 RER D C5A 1 HETATM 203 CL CL . CL E 3 . ? -1.092 -3.283 12.303 1.00 7.01 ? 101 CL A CL 1 HETATM 204 O O . HOH F 4 . ? 2.377 -4.673 5.665 1.00 21.38 ? 201 HOH A O 1 HETATM 205 O O . HOH F 4 . ? -3.453 -6.089 6.028 1.00 18.67 ? 202 HOH A O 1 HETATM 206 O O . HOH F 4 . ? 9.915 3.419 12.473 1.00 10.26 ? 203 HOH A O 1 HETATM 207 O O . HOH F 4 . ? -0.050 -2.693 19.238 1.00 21.51 ? 204 HOH A O 1 HETATM 208 O O . HOH F 4 . ? 9.367 1.659 16.028 1.00 11.92 ? 205 HOH A O 1 HETATM 209 O O . HOH F 4 . ? -6.682 -0.082 8.526 1.00 17.25 ? 206 HOH A O 1 HETATM 210 O O . HOH F 4 . ? -7.012 -4.974 7.676 1.00 22.84 ? 207 HOH A O 1 HETATM 211 O O . HOH F 4 . ? 5.309 -1.881 15.716 1.00 11.66 ? 208 HOH A O 1 HETATM 212 O O . HOH F 4 . ? -0.689 3.747 17.575 1.00 19.47 ? 209 HOH A O 1 HETATM 213 O O . HOH F 4 . ? -0.725 0.951 14.788 1.00 20.92 ? 210 HOH A O 1 HETATM 214 O O . HOH F 4 . ? -6.836 -3.501 5.721 1.00 18.49 ? 211 HOH A O 1 HETATM 215 O O . HOH F 4 . ? -6.074 2.575 8.897 1.00 15.64 ? 212 HOH A O 1 HETATM 216 O O . HOH F 4 . ? -8.672 -2.638 9.639 1.00 24.16 ? 213 HOH A O 1 HETATM 217 O O . HOH F 4 . ? 9.685 -1.487 11.328 1.00 24.69 ? 214 HOH A O 1 HETATM 218 O O . HOH F 4 . ? 1.935 6.250 15.422 1.00 14.26 ? 215 HOH A O 1 HETATM 219 O O . HOH F 4 . ? 9.039 -3.060 12.899 1.00 21.13 ? 216 HOH A O 1 HETATM 220 O O . HOH F 4 . ? -5.922 0.760 3.883 1.00 18.03 ? 217 HOH A O 1 HETATM 221 O O . HOH F 4 . ? 6.387 -6.012 2.820 1.00 26.24 ? 218 HOH A O 1 HETATM 222 O O . HOH G 4 . ? -3.900 2.960 10.552 1.00 15.60 ? 201 HOH B O 1 HETATM 223 O O . HOH G 4 . ? -1.174 9.263 14.683 1.00 11.78 ? 202 HOH B O 1 HETATM 224 O O . HOH G 4 . ? -6.142 4.610 7.184 1.00 16.82 ? 203 HOH B O 1 HETATM 225 O O . HOH G 4 . ? -2.724 13.841 6.505 1.00 12.51 ? 204 HOH B O 1 HETATM 226 O O . HOH G 4 . ? -4.009 4.556 6.453 1.00 22.26 ? 205 HOH B O 1 HETATM 227 O O . HOH G 4 . ? 2.661 7.544 6.990 1.00 17.20 ? 206 HOH B O 1 HETATM 228 O O . HOH G 4 . ? 17.928 6.772 15.581 1.00 13.69 ? 207 HOH B O 1 HETATM 229 O O . HOH G 4 . ? 12.683 2.144 12.385 1.00 23.66 ? 208 HOH B O 1 HETATM 230 O O . HOH G 4 . ? -0.692 3.140 13.183 1.00 10.55 ? 209 HOH B O 1 HETATM 231 O O . HOH G 4 . ? 5.836 6.810 6.764 1.00 19.79 ? 210 HOH B O 1 HETATM 232 O O . HOH G 4 . ? -0.214 7.073 6.261 1.00 8.90 ? 211 HOH B O 1 HETATM 233 O O . HOH G 4 . ? 9.069 8.131 14.088 1.00 27.59 ? 212 HOH B O 1 HETATM 234 O O . HOH G 4 . ? 16.850 3.262 12.764 1.00 18.38 ? 213 HOH B O 1 HETATM 235 O O . HOH G 4 . ? -5.847 8.494 5.519 1.00 24.72 ? 214 HOH B O 1 HETATM 236 O O . HOH G 4 . ? 9.148 10.426 12.713 1.00 18.42 ? 215 HOH B O 1 HETATM 237 O O . HOH G 4 . ? -1.018 9.739 4.871 1.00 19.07 ? 216 HOH B O 1 HETATM 238 O O . HOH G 4 . ? -7.476 4.999 5.419 1.00 24.26 ? 217 HOH B O 1 HETATM 239 O O . HOH G 4 . ? 16.857 4.610 17.398 1.00 25.58 ? 218 HOH B O 1 HETATM 240 O O . HOH G 4 . ? 19.878 5.021 14.801 1.00 11.97 ? 219 HOH B O 1 HETATM 241 O O . HOH G 4 . ? -7.521 13.103 6.364 1.00 26.37 ? 220 HOH B O 1 HETATM 242 O O . HOH G 4 . ? 0.091 0.799 3.830 1.00 26.20 ? 221 HOH B O 1 HETATM 243 O O . HOH G 4 . ? 17.570 7.297 17.970 1.00 25.02 ? 222 HOH B O 1 HETATM 244 O O . HOH G 4 . ? 1.471 2.776 2.461 1.00 24.77 ? 223 HOH B O 1 HETATM 245 O O . HOH G 4 . ? 0.020 5.643 3.905 1.00 30.81 ? 224 HOH B O 1 HETATM 246 O O . HOH G 4 . ? 9.458 10.624 15.806 1.00 21.50 ? 225 HOH B O 1 HETATM 247 O O . HOH G 4 . ? 7.857 -1.652 1.473 1.00 10.14 ? 226 HOH B O 1 HETATM 248 O O . HOH G 4 . ? 9.372 -3.619 4.650 1.00 10.62 ? 227 HOH B O 1 HETATM 249 O O . HOH G 4 . ? 4.252 -1.196 0.566 1.00 16.66 ? 228 HOH B O 1 HETATM 250 O O . HOH G 4 . ? 9.890 -3.226 2.368 1.00 14.38 ? 229 HOH B O 1 HETATM 251 O O . HOH G 4 . ? 11.265 1.675 0.376 1.00 19.81 ? 230 HOH B O 1 HETATM 252 O O . HOH G 4 . ? 5.908 4.342 -1.458 1.00 17.98 ? 231 HOH B O 1 HETATM 253 O O . HOH G 4 . ? 10.043 5.355 -0.609 1.00 17.45 ? 232 HOH B O 1 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MLU 1 1 1 MLU MLU A . n A 1 2 OMZ 2 2 2 OMZ OMZ A . n A 1 3 ASN 3 3 3 ASN ASN A . n A 1 4 GHP 4 4 4 GHP GHP A . n A 1 5 GHP 5 5 5 GHP GHP A . n A 1 6 OMY 6 6 6 OMY OMY A . n A 1 7 3FG 7 7 7 3FG 3FG A . n B 1 1 MLU 1 1 1 MLU MLU B . n B 1 2 OMZ 2 2 2 OMZ OMZ B . n B 1 3 ASN 3 3 3 ASN ASN B . n B 1 4 GHP 4 4 4 GHP GHP B . n B 1 5 GHP 5 5 5 GHP GHP B . n B 1 6 OMY 6 6 6 OMY OMY B . n B 1 7 3FG 7 7 7 3FG 3FG B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 CL 1 101 1 CL CL A . F 4 HOH 1 201 49 HOH HOH A . F 4 HOH 2 202 21 HOH HOH A . F 4 HOH 3 203 1 HOH HOH A . F 4 HOH 4 204 11 HOH HOH A . F 4 HOH 5 205 5 HOH HOH A . F 4 HOH 6 206 34 HOH HOH A . F 4 HOH 7 207 47 HOH HOH A . F 4 HOH 8 208 8 HOH HOH A . F 4 HOH 9 209 29 HOH HOH A . F 4 HOH 10 210 22 HOH HOH A . F 4 HOH 11 211 26 HOH HOH A . F 4 HOH 12 212 32 HOH HOH A . F 4 HOH 13 213 48 HOH HOH A . F 4 HOH 14 214 35 HOH HOH A . F 4 HOH 15 215 12 HOH HOH A . F 4 HOH 16 216 37 HOH HOH A . F 4 HOH 17 217 25 HOH HOH A . F 4 HOH 18 218 45 HOH HOH A . G 4 HOH 1 201 10 HOH HOH B . G 4 HOH 2 202 15 HOH HOH B . G 4 HOH 3 203 24 HOH HOH B . G 4 HOH 4 204 20 HOH HOH B . G 4 HOH 5 205 28 HOH HOH B . G 4 HOH 6 206 23 HOH HOH B . G 4 HOH 7 207 17 HOH HOH B . G 4 HOH 8 208 40 HOH HOH B . G 4 HOH 9 209 3 HOH HOH B . G 4 HOH 10 210 14 HOH HOH B . G 4 HOH 11 211 2 HOH HOH B . G 4 HOH 12 212 46 HOH HOH B . G 4 HOH 13 213 30 HOH HOH B . G 4 HOH 14 214 43 HOH HOH B . G 4 HOH 15 215 19 HOH HOH B . G 4 HOH 16 216 27 HOH HOH B . G 4 HOH 17 217 33 HOH HOH B . G 4 HOH 18 218 39 HOH HOH B . G 4 HOH 19 219 7 HOH HOH B . G 4 HOH 20 220 44 HOH HOH B . G 4 HOH 21 221 38 HOH HOH B . G 4 HOH 22 222 42 HOH HOH B . G 4 HOH 23 223 41 HOH HOH B . G 4 HOH 24 224 50 HOH HOH B . G 4 HOH 25 225 36 HOH HOH B . G 4 HOH 26 226 6 HOH HOH B . G 4 HOH 27 227 4 HOH HOH B . G 4 HOH 28 228 13 HOH HOH B . G 4 HOH 29 229 9 HOH HOH B . G 4 HOH 30 230 16 HOH HOH B . G 4 HOH 31 231 18 HOH HOH B . G 4 HOH 32 232 31 HOH HOH B . # _pdbx_molecule_features.prd_id PRD_000204 _pdbx_molecule_features.name VANCOMYCIN _pdbx_molecule_features.type Glycopeptide _pdbx_molecule_features.class Antibiotic _pdbx_molecule_features.details ;VANCOMYCIN IS A TRICYCLIC GLYCOPEPTIDE, GLYCOSYLATED BY A DISACCHARIDE (RESIDUES 8 AND 9) ON RESIDUE 4. ; # loop_ _pdbx_molecule.instance_id _pdbx_molecule.prd_id _pdbx_molecule.asym_id 1 PRD_000204 A 1 PRD_000204 C 2 PRD_000204 B 2 PRD_000204 D # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA monomeric 1 2 author_and_software_defined_assembly PISA monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C,E,F 2 1 B,D,G # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 300 ? 1 MORE -7 ? 1 'SSA (A^2)' 1400 ? 2 'ABSA (A^2)' 200 ? 2 MORE 2 ? 2 'SSA (A^2)' 1410 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2020-08-12 2 'Structure model' 1 1 2020-08-19 3 'Structure model' 1 2 2020-08-26 4 'Structure model' 1 3 2021-03-17 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 3 'Structure model' 'Data collection' 3 4 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' pdbx_entity_branch_descriptor 2 2 'Structure model' pdbx_entity_branch_link 3 3 'Structure model' pdbx_entity_branch_descriptor 4 4 'Structure model' citation 5 4 'Structure model' citation_author # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_citation.journal_volume' 2 4 'Structure model' '_citation.page_first' 3 4 'Structure model' '_citation.page_last' 4 4 'Structure model' '_citation_author.identifier_ORCID' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.15_3459 1 ? 'data extraction' ? ? PDB deposit@deposit.rcsb.org 'Apr. 1, 2019' ? ? ? C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ ? PDB_EXTRACT ? ? package 3.25 2 # _pdbx_entry_details.entry_id 7C4U _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ;VANCOMYCIN IS A TRICYCLIC GLYCOPEPTIDE. THE SCAFFOLD IS A HEPTAPEPTIDE WITH THE CONFIGURATION D-D-L-D-D-L-L. IT IS FURTHER GLYCOSYLATED BY A DISACCHARIDE MADE OF D-GLUCOSE AND VANCOSAMINE. HERE, VANCOMYCIN IS REPRESENTED BY GROUPING TOUGHER THE SEQUENCE (SEQRES) AND THE TWO LIGANDS (HET) BGC AND RER. ; _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest Y # _em_3d_fitting.entry_id 7C4U _em_3d_fitting.id 1 _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_protocol 'RIGID BODY FIT' _em_3d_fitting.ref_space RECIPROCAL _em_3d_fitting.target_criteria ? _em_3d_fitting.method ? # _em_3d_fitting_list.3d_fitting_id 1 _em_3d_fitting_list.id 1 _em_3d_fitting_list.details ? _em_3d_fitting_list.pdb_chain_id A _em_3d_fitting_list.pdb_chain_residue_range 1-7 _em_3d_fitting_list.pdb_entry_id 1FVM # _em_3d_reconstruction.entry_id 7C4U _em_3d_reconstruction.id 1 _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.details ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.num_particles ? _em_3d_reconstruction.resolution 1.2 _em_3d_reconstruction.resolution_method 'DIFFRACTION PATTERN/LAYERLINES' _em_3d_reconstruction.symmetry_type '3D CRYSTAL' _em_3d_reconstruction.method CRYSTALLOGRAPHY _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.magnification_calibration ? # _em_buffer.id 1 _em_buffer.details ? _em_buffer.pH 7.0 _em_buffer.specimen_id 1 _em_buffer.name ? # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.details ? _em_entity_assembly.name Vancomycin _em_entity_assembly.source NATURAL _em_entity_assembly.type COMPLEX _em_entity_assembly.entity_id_list 1 _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? # _em_imaging.id 1 _em_imaging.entry_id 7C4U _em_imaging.accelerating_voltage 200 _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter 100 _em_imaging.calibrated_defocus_max ? _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_magnification ? _em_imaging.cryogen NITROGEN _em_imaging.details ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.microscope_model 'FEI TECNAI F20' _em_imaging.mode DIFFRACTION _em_imaging.nominal_cs 2.7 _em_imaging.nominal_defocus_max ? _em_imaging.nominal_defocus_min ? _em_imaging.nominal_magnification ? _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? _em_imaging.residual_tilt ? _em_imaging.specimen_holder_model 'GATAN 626 SINGLE TILT LIQUID NITROGEN CRYO TRANSFER HOLDER' _em_imaging.specimen_id 1 _em_imaging.citation_id ? _em_imaging.date ? _em_imaging.temperature ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.astigmatism ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? _em_imaging.specimen_holder_type ? # _em_sample_support.id 1 _em_sample_support.specimen_id 1 _em_sample_support.details ? _em_sample_support.grid_material COPPER _em_sample_support.grid_mesh_size 200 _em_sample_support.grid_type Homemade _em_sample_support.method ? _em_sample_support.film_material ? # _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.chamber_temperature 298 _em_vitrification.cryogen_name ETHANE _em_vitrification.details ? _em_vitrification.humidity 50 _em_vitrification.instrument 'FEI VITROBOT MARK IV' _em_vitrification.entry_id 7C4U _em_vitrification.citation_id ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 7C4U _em_experiment.id 1 _em_experiment.aggregation_state '3D ARRAY' _em_experiment.reconstruction_method CRYSTALLOGRAPHY _em_experiment.entity_assembly_id 1 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 CZ _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 OMZ _pdbx_validate_close_contact.auth_seq_id_1 2 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 C5 _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 GHP _pdbx_validate_close_contact.auth_seq_id_2 4 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.13 # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ASN _pdbx_validate_torsion.auth_asym_id B _pdbx_validate_torsion.auth_seq_id 3 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi 177.98 _pdbx_validate_torsion.psi -144.77 # _em_3d_crystal_entity.id 1 _em_3d_crystal_entity.image_processing_id 1 _em_3d_crystal_entity.angle_alpha 90.00 _em_3d_crystal_entity.angle_beta 90.00 _em_3d_crystal_entity.angle_gamma 90.00 _em_3d_crystal_entity.length_a 20.06 _em_3d_crystal_entity.length_b 33.02 _em_3d_crystal_entity.length_c 41.72 _em_3d_crystal_entity.space_group_name 'P 2 21 21' _em_3d_crystal_entity.space_group_num 18 # _em_ctf_correction.id 1 _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.type NONE _em_ctf_correction.details ? # _em_diffraction.id 1 _em_diffraction.camera_length 730 _em_diffraction.imaging_id 1 _em_diffraction.tilt_angle_list ? # _em_diffraction_shell.id 1 _em_diffraction_shell.em_diffraction_stats_id 1 _em_diffraction_shell.fourier_space_coverage 75.6 _em_diffraction_shell.high_resolution 1.20 _em_diffraction_shell.low_resolution 1.30 _em_diffraction_shell.multiplicity 7.45 _em_diffraction_shell.num_structure_factors 1907 _em_diffraction_shell.phase_residual 1 # _em_diffraction_stats.id 1 _em_diffraction_stats.details ? _em_diffraction_stats.image_processing_id 1 _em_diffraction_stats.fourier_space_coverage 74.7 _em_diffraction_stats.high_resolution 1.2 _em_diffraction_stats.num_intensities_measured 64605 _em_diffraction_stats.num_structure_factors 6840 _em_diffraction_stats.overall_phase_error 0 _em_diffraction_stats.overall_phase_residual 1 _em_diffraction_stats.phase_error_rejection_criteria 60 _em_diffraction_stats.r_merge 0.185 _em_diffraction_stats.r_sym 0.185 # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.experimental_flag NO _em_entity_assembly_molwt.units ? _em_entity_assembly_molwt.value ? # _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.ncbi_tax_id 31958 _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organism 'Amycolatopsis orientalis' _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.avg_electron_dose_per_image 0.0286 _em_image_recording.average_exposure_time 5.72 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN ULTRASCAN 4000 (4k x 4k)' _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.id _em_software.category _em_software.details _em_software.name _em_software.version _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id 1 'IMAGE ACQUISITION' ? ? ? ? ? 1 2 MASKING ? ? ? ? ? ? 3 'CTF CORRECTION' ? ? ? 1 ? ? 4 'LAYERLINE INDEXING' ? ? ? ? ? ? 5 'DIFFRACTION INDEXING' ? ? ? ? ? ? 6 'MODEL FITTING' ? 'CCP4 package' ? ? 1 ? 7 OTHER ? ? ? ? ? ? 8 'MOLECULAR REPLACEMENT' ? ? ? 1 ? ? 9 'LATTICE DISTORTION CORRECTION' ? ? ? 1 ? ? 10 'SYMMETRY DETERMINATION' ? ? ? 1 ? ? 11 'CRYSTALLOGRAPHY MERGING' ? ? ? 1 ? ? 12 RECONSTRUCTION ? ? ? 1 ? ? 13 'MODEL REFINEMENT' ? PHENIX ? ? 1 ? # _em_specimen.id 1 _em_specimen.experiment_id 1 _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'National Science Foundation (NSF, China)' China 51925307 1 'National Science Foundation (NSF, China)' China 21733010 2 # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero C 2 BGC 1 C BGC 1 A BGC 8 n C 2 RER 2 C RER 2 A RER 9 n D 2 BGC 1 D BGC 1 B BGC 8 n D 2 RER 2 D RER 2 B RER 9 n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier BGC 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpb BGC 'COMMON NAME' GMML 1.0 b-D-glucopyranose BGC 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Glcp BGC 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Glc # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 2 'WURCS=2.0/2,2,1/[a2122h-1b_1-5][ad621m-1a_1-5_3*C_3*N]/1-2/a2-b1' WURCS PDB2Glycan 1.1.0 2 2 '[][D-1-deoxy-Glcp]{[(2+1)][a-L-2-deoxy-Fucp3N]{}}' LINUCS PDB-CARE ? # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.comp_id_1 RER _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_2 BGC _pdbx_entity_branch_link.atom_id_2 O2 _pdbx_entity_branch_link.leaving_atom_id_2 HO2 _pdbx_entity_branch_link.value_order sing _pdbx_entity_branch_link.details ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 2 BGC 1 n 2 RER 2 n # loop_ _pdbx_entity_instance_feature.ordinal _pdbx_entity_instance_feature.comp_id _pdbx_entity_instance_feature.asym_id _pdbx_entity_instance_feature.seq_num _pdbx_entity_instance_feature.auth_comp_id _pdbx_entity_instance_feature.auth_asym_id _pdbx_entity_instance_feature.auth_seq_num _pdbx_entity_instance_feature.feature_type _pdbx_entity_instance_feature.details 1 3FG ? ? 3FG ? ? 'SUBJECT OF INVESTIGATION' ? 2 BGC ? ? BGC ? ? 'SUBJECT OF INVESTIGATION' ? 3 CL ? ? CL ? ? 'SUBJECT OF INVESTIGATION' ? 4 GHP ? ? GHP ? ? 'SUBJECT OF INVESTIGATION' ? 5 MLU ? ? MLU ? ? 'SUBJECT OF INVESTIGATION' ? 6 OMY ? ? OMY ? ? 'SUBJECT OF INVESTIGATION' ? 7 OMZ ? ? OMZ ? ? 'SUBJECT OF INVESTIGATION' ? 8 RER ? ? RER ? ? 'SUBJECT OF INVESTIGATION' ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'CHLORIDE ION' CL 4 water HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? #