data_7N2J # _entry.id 7N2J # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.392 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7N2J pdb_00007n2j 10.2210/pdb7n2j/pdb WWPDB D_1000254652 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2022-06-01 2 'Structure model' 1 1 2023-05-10 3 'Structure model' 1 2 2024-05-22 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' chem_comp_atom 4 3 'Structure model' chem_comp_bond # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_CSD' 4 2 'Structure model' '_citation.journal_id_ISSN' 5 2 'Structure model' '_citation.journal_volume' 6 2 'Structure model' '_citation.page_first' 7 2 'Structure model' '_citation.page_last' 8 2 'Structure model' '_citation.pdbx_database_id_DOI' 9 2 'Structure model' '_citation.pdbx_database_id_PubMed' 10 2 'Structure model' '_citation.title' 11 2 'Structure model' '_citation.year' 12 2 'Structure model' '_citation_author.identifier_ORCID' 13 2 'Structure model' '_citation_author.name' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 7N2J _pdbx_database_status.recvd_initial_deposition_date 2021-05-29 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Richards, L.S.' 1 0000-0002-1694-1652 'Flores, M.D.' 2 0000-0002-4483-087X 'Zee, C.T.' 3 0000-0002-6630-706X 'Glynn, C.' 4 0000-0002-2197-2357 'Gallagher-Jones, M.' 5 0000-0003-4227-917X 'Sawaya, M.R.' 6 0000-0003-0874-9043 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Acs Bio Med Chem Au' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2694-2437 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 3 _citation.language ? _citation.page_first 201 _citation.page_last 210 _citation.title 'Fragment-Based Ab Initio Phasing of Peptidic Nanocrystals by MicroED.' _citation.year 2023 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1021/acsbiomedchemau.2c00082 _citation.pdbx_database_id_PubMed 37096030 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Richards, L.S.' 1 ? primary 'Flores, M.D.' 2 ? primary 'Millan, C.' 3 ? primary 'Glynn, C.' 4 ? primary 'Zee, C.T.' 5 ? primary 'Sawaya, M.R.' 6 0000-0003-0874-9043 primary 'Gallagher-Jones, M.' 7 ? primary 'Borges, R.J.' 8 ? primary 'Uson, I.' 9 ? primary 'Rodriguez, J.A.' 10 0000-0002-0248-4964 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'prion protein' 1141.147 1 ? ? ? ? 2 water nat water 18.015 1 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code QYNNENNFV _entity_poly.pdbx_seq_one_letter_code_can QYNNENNFV _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLN n 1 2 TYR n 1 3 ASN n 1 4 ASN n 1 5 GLU n 1 6 ASN n 1 7 ASN n 1 8 PHE n 1 9 VAL n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 9 _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 HOH non-polymer . WATER ? 'H2 O' 18.015 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLN 1 -1 -1 GLN GLN A . n A 1 2 TYR 2 0 0 TYR TYR A . n A 1 3 ASN 3 1 1 ASN ASN A . n A 1 4 ASN 4 2 2 ASN ASN A . n A 1 5 GLU 5 3 3 GLU GLU A . n A 1 6 ASN 6 4 4 ASN ASN A . n A 1 7 ASN 7 5 5 ASN ASN A . n A 1 8 PHE 8 6 6 PHE PHE A . n A 1 9 VAL 9 7 7 VAL VAL A . n # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id HOH _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 101 _pdbx_nonpoly_scheme.auth_seq_num 1 _pdbx_nonpoly_scheme.pdb_mon_id HOH _pdbx_nonpoly_scheme.auth_mon_id HOH _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data reduction' ? ? 'Wolfgang Kabsch' Wolfgang.Kabsch@mpimf-heidelberg.mpg.de ? ? ? ? ? http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/ ? XDS ? ? package . 1 ? 'data scaling' ? ? 'Wolfgang Kabsch' ? ? ? ? ? ? http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html ? XSCALE ? ? package . 2 ? refinement ? ? 'Paul D. Adams' PDAdams@lbl.gov ? ? ? ? C++ http://www.phenix-online.org/ ? PHENIX ? ? package . 3 ? 'data extraction' ? ? PDB deposit@deposit.rcsb.org 'Oct. 31, 2020' ? ? ? C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ ? PDB_EXTRACT ? ? package 3.27 4 # _cell.angle_alpha 94.850 _cell.angle_alpha_esd ? _cell.angle_beta 90.260 _cell.angle_beta_esd ? _cell.angle_gamma 99.990 _cell.angle_gamma_esd ? _cell.entry_id 7N2J _cell.details ? _cell.formula_units_Z ? _cell.length_a 4.870 _cell.length_a_esd ? _cell.length_b 10.060 _cell.length_b_esd ? _cell.length_c 30.660 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 1 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7N2J _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7N2J _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON CRYSTALLOGRAPHY' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _diffrn.ambient_environment ? _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l ? _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type electron # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _reflns.B_iso_Wilson_estimate 6.859 _reflns.entry_id 7N2J _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 0.900 _reflns.d_resolution_low 7.980 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 915 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 81.000 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 5.383 _reflns.pdbx_Rmerge_I_obs 0.197 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 5.210 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 0.824 _reflns.pdbx_scaling_rejects 10 _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.214 _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all 18502 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.988 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_CC_star _reflns_shell.pdbx_R_split _reflns_shell.pdbx_percent_possible_ellipsoidal _reflns_shell.pdbx_percent_possible_spherical _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous _reflns_shell.pdbx_percent_possible_spherical_anomalous _reflns_shell.pdbx_redundancy_anomalous _reflns_shell.pdbx_CC_half_anomalous _reflns_shell.pdbx_absDiff_over_sigma_anomalous _reflns_shell.pdbx_percent_possible_anomalous 0.900 0.920 ? 2.550 ? 1233 318 ? 258 81.100 ? ? ? ? 0.466 ? ? ? ? ? ? ? ? 4.779 ? ? ? ? 0.520 ? ? 1 1 0.813 ? ? ? ? ? ? ? ? ? ? 0.920 0.950 ? 3.010 ? 1321 316 ? 262 82.900 ? ? ? ? 0.455 ? ? ? ? ? ? ? ? 5.042 ? ? ? ? 0.507 ? ? 2 1 0.775 ? ? ? ? ? ? ? ? ? ? 0.950 0.980 ? 3.360 ? 1367 323 ? 267 82.700 ? ? ? ? 0.349 ? ? ? ? ? ? ? ? 5.120 ? ? ? ? 0.386 ? ? 3 1 0.880 ? ? ? ? ? ? ? ? ? ? 0.980 1.010 ? 3.300 ? 1112 274 ? 219 79.900 ? ? ? ? 0.418 ? ? ? ? ? ? ? ? 5.078 ? ? ? ? 0.465 ? ? 4 1 0.799 ? ? ? ? ? ? ? ? ? ? 1.010 1.040 ? 3.590 ? 973 251 ? 202 80.500 ? ? ? ? 0.313 ? ? ? ? ? ? ? ? 4.817 ? ? ? ? 0.348 ? ? 5 1 0.968 ? ? ? ? ? ? ? ? ? ? 1.040 1.080 ? 4.600 ? 1207 278 ? 224 80.600 ? ? ? ? 0.315 ? ? ? ? ? ? ? ? 5.388 ? ? ? ? 0.346 ? ? 6 1 0.880 ? ? ? ? ? ? ? ? ? ? 1.080 1.120 ? 4.960 ? 1128 259 ? 213 82.200 ? ? ? ? 0.291 ? ? ? ? ? ? ? ? 5.296 ? ? ? ? 0.320 ? ? 7 1 0.904 ? ? ? ? ? ? ? ? ? ? 1.120 1.160 ? 5.510 ? 1213 267 ? 223 83.500 ? ? ? ? 0.264 ? ? ? ? ? ? ? ? 5.439 ? ? ? ? 0.289 ? ? 8 1 0.883 ? ? ? ? ? ? ? ? ? ? 1.160 1.210 ? 5.340 ? 1093 248 ? 200 80.600 ? ? ? ? 0.288 ? ? ? ? ? ? ? ? 5.465 ? ? ? ? 0.316 ? ? 9 1 0.951 ? ? ? ? ? ? ? ? ? ? 1.210 1.270 ? 5.650 ? 1029 226 ? 183 81.000 ? ? ? ? 0.258 ? ? ? ? ? ? ? ? 5.623 ? ? ? ? 0.283 ? ? 10 1 0.965 ? ? ? ? ? ? ? ? ? ? 1.270 1.340 ? 5.690 ? 818 198 ? 155 78.300 ? ? ? ? 0.291 ? ? ? ? ? ? ? ? 5.277 ? ? ? ? 0.319 ? ? 11 1 0.869 ? ? ? ? ? ? ? ? ? ? 1.340 1.420 ? 6.560 ? 993 201 ? 167 83.100 ? ? ? ? 0.241 ? ? ? ? ? ? ? ? 5.946 ? ? ? ? 0.261 ? ? 12 1 0.936 ? ? ? ? ? ? ? ? ? ? 1.420 1.520 ? 6.590 ? 925 204 ? 162 79.400 ? ? ? ? 0.262 ? ? ? ? ? ? ? ? 5.710 ? ? ? ? 0.286 ? ? 13 1 0.932 ? ? ? ? ? ? ? ? ? ? 1.520 1.640 ? 7.740 ? 988 196 ? 162 82.700 ? ? ? ? 0.208 ? ? ? ? ? ? ? ? 6.099 ? ? ? ? 0.224 ? ? 14 1 0.973 ? ? ? ? ? ? ? ? ? ? 1.640 1.800 ? 7.280 ? 671 152 ? 119 78.300 ? ? ? ? 0.204 ? ? ? ? ? ? ? ? 5.639 ? ? ? ? 0.222 ? ? 15 1 0.958 ? ? ? ? ? ? ? ? ? ? 1.800 2.010 ? 7.980 ? 682 147 ? 117 79.600 ? ? ? ? 0.191 ? ? ? ? ? ? ? ? 5.829 ? ? ? ? 0.207 ? ? 16 1 0.975 ? ? ? ? ? ? ? ? ? ? 2.010 2.320 ? 8.150 ? 661 142 ? 118 83.100 ? ? ? ? 0.172 ? ? ? ? ? ? ? ? 5.602 ? ? ? ? 0.187 ? ? 17 1 0.963 ? ? ? ? ? ? ? ? ? ? 2.320 2.850 ? 8.310 ? 440 102 ? 79 77.500 ? ? ? ? 0.155 ? ? ? ? ? ? ? ? 5.570 ? ? ? ? 0.168 ? ? 18 1 0.976 ? ? ? ? ? ? ? ? ? ? 2.850 4.030 ? 8.990 ? 443 93 ? 77 82.800 ? ? ? ? 0.138 ? ? ? ? ? ? ? ? 5.753 ? ? ? ? 0.150 ? ? 19 1 0.986 ? ? ? ? ? ? ? ? ? ? 4.030 7.980 ? 9.930 ? 205 47 ? 30 63.800 ? ? ? ? 0.143 ? ? ? ? ? ? ? ? 6.833 ? ? ? ? 0.153 ? ? 20 1 0.982 ? ? ? ? ? ? ? ? ? ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max 23.190 _refine.B_iso_mean 4.5561 _refine.B_iso_min 0.000 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 7N2J _refine.pdbx_refine_id 'ELECTRON CRYSTALLOGRAPHY' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.5000 _refine.ls_d_res_low 7.9800 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 730 _refine.ls_number_reflns_R_free 66 _refine.ls_number_reflns_R_work 664 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 80.4000 _refine.ls_percent_reflns_R_free 9.0400 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1798 _refine.ls_R_factor_R_free 0.2265 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1744 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.240 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct ? _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 24.4100 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML -0.0000 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'ELECTRON CRYSTALLOGRAPHY' _refine_hist.cycle_id final _refine_hist.details ? _refine_hist.d_res_high 1.5000 _refine_hist.d_res_low 7.9800 _refine_hist.number_atoms_solvent 1 _refine_hist.number_atoms_total 82 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total 9 _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent 5.73 _refine_hist.pdbx_number_atoms_protein 81 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'ELECTRON CRYSTALLOGRAPHY' 1.5005 1.5537 . . 7 69 81.0000 . . . 0.1879 0.0000 0.2290 . . . . . . . . . . . 'ELECTRON CRYSTALLOGRAPHY' 1.5537 1.6155 . . 7 78 79.0000 . . . 0.1276 0.0000 0.1859 . . . . . . . . . . . 'ELECTRON CRYSTALLOGRAPHY' 1.6155 1.6883 . . 7 64 86.0000 . . . 0.2802 0.0000 0.2121 . . . . . . . . . . . 'ELECTRON CRYSTALLOGRAPHY' 1.6883 1.7764 . . 5 56 79.0000 . . . 0.3783 0.0000 0.2150 . . . . . . . . . . . 'ELECTRON CRYSTALLOGRAPHY' 1.7764 1.8863 . . 6 59 80.0000 . . . 0.4625 0.0000 0.2183 . . . . . . . . . . . 'ELECTRON CRYSTALLOGRAPHY' 1.8863 2.0297 . . 7 74 81.0000 . . . 0.3424 0.0000 0.1591 . . . . . . . . . . . 'ELECTRON CRYSTALLOGRAPHY' 2.0297 2.2300 . . 7 62 78.0000 . . . 0.1924 0.0000 0.1492 . . . . . . . . . . . 'ELECTRON CRYSTALLOGRAPHY' 2.2300 2.5434 . . 8 84 85.0000 . . . 0.1674 0.0000 0.1603 . . . . . . . . . . . 'ELECTRON CRYSTALLOGRAPHY' 2.5434 3.1707 . . 5 51 80.0000 . . . 0.2019 0.0000 0.2068 . . . . . . . . . . . 'ELECTRON CRYSTALLOGRAPHY' 3.1707 7.9800 . . 7 67 80.0000 . . . 0.1855 0.0000 0.1345 . . . . . . . . . . . # _struct.entry_id 7N2J _struct.title 'MicroED structure of a mutant mammalian prion segment phased by ARCIMBOLDO-BORGES' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7N2J _struct_keywords.text 'prion, MicroED, amyloid, PROTEIN FIBRIL' _struct_keywords.pdbx_keywords 'PROTEIN FIBRIL' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 7N2J _struct_ref.pdbx_db_accession 7N2J _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 7N2J _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 9 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 7N2J _struct_ref_seq.db_align_beg -1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 7 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg -1 _struct_ref_seq.pdbx_auth_seq_align_end 7 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 0 ? 1 MORE 0 ? 1 'SSA (A^2)' 1380 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _em_3d_fitting.entry_id 7N2J _em_3d_fitting.id 1 _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_protocol OTHER _em_3d_fitting.ref_space ? _em_3d_fitting.target_criteria ? _em_3d_fitting.method ? # _em_3d_reconstruction.entry_id 7N2J _em_3d_reconstruction.id 1 _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.details ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.num_particles ? _em_3d_reconstruction.resolution ? _em_3d_reconstruction.resolution_method 'DIFFRACTION PATTERN/LAYERLINES' _em_3d_reconstruction.symmetry_type '3D CRYSTAL' _em_3d_reconstruction.method ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.magnification_calibration ? # _em_buffer.id 1 _em_buffer.details ? _em_buffer.pH 4.5 _em_buffer.specimen_id 1 _em_buffer.name ? # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.details ? _em_entity_assembly.name 'Sterc zipper structure of a mutant mammalian prion segment' _em_entity_assembly.source 'MULTIPLE SOURCES' _em_entity_assembly.type COMPLEX _em_entity_assembly.entity_id_list 1 _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? # _em_imaging.id 1 _em_imaging.entry_id 7N2J _em_imaging.accelerating_voltage 200 _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.calibrated_defocus_max ? _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_magnification ? _em_imaging.cryogen ? _em_imaging.details ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.microscope_model 'FEI TALOS ARCTICA' _em_imaging.mode DIFFRACTION _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_max ? _em_imaging.nominal_defocus_min ? _em_imaging.nominal_magnification ? _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? _em_imaging.residual_tilt ? _em_imaging.specimen_holder_model ? _em_imaging.specimen_id 1 _em_imaging.citation_id ? _em_imaging.date ? _em_imaging.temperature ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.astigmatism ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? _em_imaging.specimen_holder_type ? # _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.chamber_temperature ? _em_vitrification.cryogen_name ETHANE _em_vitrification.details ? _em_vitrification.humidity ? _em_vitrification.instrument ? _em_vitrification.entry_id 7N2J _em_vitrification.citation_id ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 7N2J _em_experiment.id 1 _em_experiment.aggregation_state '3D ARRAY' _em_experiment.reconstruction_method CRYSTALLOGRAPHY _em_experiment.entity_assembly_id 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ASN N N N N 1 ASN CA C N S 2 ASN C C N N 3 ASN O O N N 4 ASN CB C N N 5 ASN CG C N N 6 ASN OD1 O N N 7 ASN ND2 N N N 8 ASN OXT O N N 9 ASN H H N N 10 ASN H2 H N N 11 ASN HA H N N 12 ASN HB2 H N N 13 ASN HB3 H N N 14 ASN HD21 H N N 15 ASN HD22 H N N 16 ASN HXT H N N 17 GLN N N N N 18 GLN CA C N S 19 GLN C C N N 20 GLN O O N N 21 GLN CB C N N 22 GLN CG C N N 23 GLN CD C N N 24 GLN OE1 O N N 25 GLN NE2 N N N 26 GLN OXT O N N 27 GLN H H N N 28 GLN H2 H N N 29 GLN HA H N N 30 GLN HB2 H N N 31 GLN HB3 H N N 32 GLN HG2 H N N 33 GLN HG3 H N N 34 GLN HE21 H N N 35 GLN HE22 H N N 36 GLN HXT H N N 37 GLU N N N N 38 GLU CA C N S 39 GLU C C N N 40 GLU O O N N 41 GLU CB C N N 42 GLU CG C N N 43 GLU CD C N N 44 GLU OE1 O N N 45 GLU OE2 O N N 46 GLU OXT O N N 47 GLU H H N N 48 GLU H2 H N N 49 GLU HA H N N 50 GLU HB2 H N N 51 GLU HB3 H N N 52 GLU HG2 H N N 53 GLU HG3 H N N 54 GLU HE2 H N N 55 GLU HXT H N N 56 HOH O O N N 57 HOH H1 H N N 58 HOH H2 H N N 59 PHE N N N N 60 PHE CA C N S 61 PHE C C N N 62 PHE O O N N 63 PHE CB C N N 64 PHE CG C Y N 65 PHE CD1 C Y N 66 PHE CD2 C Y N 67 PHE CE1 C Y N 68 PHE CE2 C Y N 69 PHE CZ C Y N 70 PHE OXT O N N 71 PHE H H N N 72 PHE H2 H N N 73 PHE HA H N N 74 PHE HB2 H N N 75 PHE HB3 H N N 76 PHE HD1 H N N 77 PHE HD2 H N N 78 PHE HE1 H N N 79 PHE HE2 H N N 80 PHE HZ H N N 81 PHE HXT H N N 82 TYR N N N N 83 TYR CA C N S 84 TYR C C N N 85 TYR O O N N 86 TYR CB C N N 87 TYR CG C Y N 88 TYR CD1 C Y N 89 TYR CD2 C Y N 90 TYR CE1 C Y N 91 TYR CE2 C Y N 92 TYR CZ C Y N 93 TYR OH O N N 94 TYR OXT O N N 95 TYR H H N N 96 TYR H2 H N N 97 TYR HA H N N 98 TYR HB2 H N N 99 TYR HB3 H N N 100 TYR HD1 H N N 101 TYR HD2 H N N 102 TYR HE1 H N N 103 TYR HE2 H N N 104 TYR HH H N N 105 TYR HXT H N N 106 VAL N N N N 107 VAL CA C N S 108 VAL C C N N 109 VAL O O N N 110 VAL CB C N N 111 VAL CG1 C N N 112 VAL CG2 C N N 113 VAL OXT O N N 114 VAL H H N N 115 VAL H2 H N N 116 VAL HA H N N 117 VAL HB H N N 118 VAL HG11 H N N 119 VAL HG12 H N N 120 VAL HG13 H N N 121 VAL HG21 H N N 122 VAL HG22 H N N 123 VAL HG23 H N N 124 VAL HXT H N N 125 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ASN N CA sing N N 1 ASN N H sing N N 2 ASN N H2 sing N N 3 ASN CA C sing N N 4 ASN CA CB sing N N 5 ASN CA HA sing N N 6 ASN C O doub N N 7 ASN C OXT sing N N 8 ASN CB CG sing N N 9 ASN CB HB2 sing N N 10 ASN CB HB3 sing N N 11 ASN CG OD1 doub N N 12 ASN CG ND2 sing N N 13 ASN ND2 HD21 sing N N 14 ASN ND2 HD22 sing N N 15 ASN OXT HXT sing N N 16 GLN N CA sing N N 17 GLN N H sing N N 18 GLN N H2 sing N N 19 GLN CA C sing N N 20 GLN CA CB sing N N 21 GLN CA HA sing N N 22 GLN C O doub N N 23 GLN C OXT sing N N 24 GLN CB CG sing N N 25 GLN CB HB2 sing N N 26 GLN CB HB3 sing N N 27 GLN CG CD sing N N 28 GLN CG HG2 sing N N 29 GLN CG HG3 sing N N 30 GLN CD OE1 doub N N 31 GLN CD NE2 sing N N 32 GLN NE2 HE21 sing N N 33 GLN NE2 HE22 sing N N 34 GLN OXT HXT sing N N 35 GLU N CA sing N N 36 GLU N H sing N N 37 GLU N H2 sing N N 38 GLU CA C sing N N 39 GLU CA CB sing N N 40 GLU CA HA sing N N 41 GLU C O doub N N 42 GLU C OXT sing N N 43 GLU CB CG sing N N 44 GLU CB HB2 sing N N 45 GLU CB HB3 sing N N 46 GLU CG CD sing N N 47 GLU CG HG2 sing N N 48 GLU CG HG3 sing N N 49 GLU CD OE1 doub N N 50 GLU CD OE2 sing N N 51 GLU OE2 HE2 sing N N 52 GLU OXT HXT sing N N 53 HOH O H1 sing N N 54 HOH O H2 sing N N 55 PHE N CA sing N N 56 PHE N H sing N N 57 PHE N H2 sing N N 58 PHE CA C sing N N 59 PHE CA CB sing N N 60 PHE CA HA sing N N 61 PHE C O doub N N 62 PHE C OXT sing N N 63 PHE CB CG sing N N 64 PHE CB HB2 sing N N 65 PHE CB HB3 sing N N 66 PHE CG CD1 doub Y N 67 PHE CG CD2 sing Y N 68 PHE CD1 CE1 sing Y N 69 PHE CD1 HD1 sing N N 70 PHE CD2 CE2 doub Y N 71 PHE CD2 HD2 sing N N 72 PHE CE1 CZ doub Y N 73 PHE CE1 HE1 sing N N 74 PHE CE2 CZ sing Y N 75 PHE CE2 HE2 sing N N 76 PHE CZ HZ sing N N 77 PHE OXT HXT sing N N 78 TYR N CA sing N N 79 TYR N H sing N N 80 TYR N H2 sing N N 81 TYR CA C sing N N 82 TYR CA CB sing N N 83 TYR CA HA sing N N 84 TYR C O doub N N 85 TYR C OXT sing N N 86 TYR CB CG sing N N 87 TYR CB HB2 sing N N 88 TYR CB HB3 sing N N 89 TYR CG CD1 doub Y N 90 TYR CG CD2 sing Y N 91 TYR CD1 CE1 sing Y N 92 TYR CD1 HD1 sing N N 93 TYR CD2 CE2 doub Y N 94 TYR CD2 HD2 sing N N 95 TYR CE1 CZ doub Y N 96 TYR CE1 HE1 sing N N 97 TYR CE2 CZ sing Y N 98 TYR CE2 HE2 sing N N 99 TYR CZ OH sing N N 100 TYR OH HH sing N N 101 TYR OXT HXT sing N N 102 VAL N CA sing N N 103 VAL N H sing N N 104 VAL N H2 sing N N 105 VAL CA C sing N N 106 VAL CA CB sing N N 107 VAL CA HA sing N N 108 VAL C O doub N N 109 VAL C OXT sing N N 110 VAL CB CG1 sing N N 111 VAL CB CG2 sing N N 112 VAL CB HB sing N N 113 VAL CG1 HG11 sing N N 114 VAL CG1 HG12 sing N N 115 VAL CG1 HG13 sing N N 116 VAL CG2 HG21 sing N N 117 VAL CG2 HG22 sing N N 118 VAL CG2 HG23 sing N N 119 VAL OXT HXT sing N N 120 # _em_3d_crystal_entity.id 1 _em_3d_crystal_entity.image_processing_id 1 _em_3d_crystal_entity.angle_alpha 94.85 _em_3d_crystal_entity.angle_beta 90.264 _em_3d_crystal_entity.angle_gamma 99.98 _em_3d_crystal_entity.length_a 4.87 _em_3d_crystal_entity.length_b 10.06 _em_3d_crystal_entity.length_c 30.66 _em_3d_crystal_entity.space_group_name P1 _em_3d_crystal_entity.space_group_num 1 # _em_ctf_correction.id 1 _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.type NONE _em_ctf_correction.details ? # _em_diffraction.id 1 _em_diffraction.camera_length 520 _em_diffraction.imaging_id 1 _em_diffraction.tilt_angle_list ? # loop_ _em_diffraction_shell.id _em_diffraction_shell.em_diffraction_stats_id _em_diffraction_shell.fourier_space_coverage _em_diffraction_shell.high_resolution _em_diffraction_shell.low_resolution _em_diffraction_shell.multiplicity _em_diffraction_shell.num_structure_factors _em_diffraction_shell.phase_residual 1 1 80 7.9805 3.1707 6.16 67 0.01 2 1 80 3.1707 2.5434 5.11 51 0.01 3 1 85 2.5434 2.2300 5.98 84 0.01 4 1 78 2.2300 2.0297 5.57 62 0.01 5 1 81 2.0297 1.8863 6.28 74 0.01 6 1 80 1.8863 1.7764 5.48 59 0.01 7 1 79 1.7764 1.6883 5.04 56 0.01 8 1 86 1.6883 1.6155 6.15 64 0.01 9 1 79 1.6155 1.5537 6.11 78 0.01 10 1 81 1.5537 1.5005 5.72 69 0.01 # _em_diffraction_stats.id 1 _em_diffraction_stats.details ? _em_diffraction_stats.image_processing_id 1 _em_diffraction_stats.fourier_space_coverage 79.9 _em_diffraction_stats.high_resolution 1.5 _em_diffraction_stats.num_intensities_measured 4237 _em_diffraction_stats.num_structure_factors 730 _em_diffraction_stats.overall_phase_error 23.62 _em_diffraction_stats.overall_phase_residual 0.01 _em_diffraction_stats.phase_error_rejection_criteria 0 _em_diffraction_stats.r_merge 18.5 _em_diffraction_stats.r_sym 18.5 # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.avg_electron_dose_per_image 0.05 _em_image_recording.average_exposure_time ? _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'TVIPS TEMCAM-F416 (4k x 4k)' _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.id _em_software.category _em_software.details _em_software.name _em_software.version _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id 1 'IMAGE ACQUISITION' ? ? ? ? ? 1 2 MASKING ? ? ? ? ? ? 3 'CTF CORRECTION' ? ? ? 1 ? ? 4 'LAYERLINE INDEXING' ? ? ? ? ? ? 5 'DIFFRACTION INDEXING' ? ? ? ? ? ? 6 'MODEL FITTING' ? ? ? ? 1 ? 7 OTHER ? ? ? ? ? ? 8 'MODEL REFINEMENT' ? ? ? ? 1 ? 9 'MOLECULAR REPLACEMENT' ? ? ? 1 ? ? 10 'LATTICE DISTORTION CORRECTION' ? ? ? 1 ? ? 11 'SYMMETRY DETERMINATION' ? ? ? 1 ? ? 12 'CRYSTALLOGRAPHY MERGING' ? ? ? 1 ? ? 13 RECONSTRUCTION ? ? ? 1 ? ? # _em_specimen.id 1 _em_specimen.experiment_id 1 _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'National Science Foundation (NSF, United States)' 'United States' DMR-1548924 1 'Department of Energy (DOE, United States)' 'United States' DE-FC02-02ER63421 2 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' GM128867 3 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' P41GM136508 4 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' GM136614 5 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' GM007185 6 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' AI143368 7 'Sao Paulo Research Foundation (FAPESP)' 'United States' 16/24191-8 8 'Sao Paulo Research Foundation (FAPESP)' Brazil 17/13485-3 9 'Spanish Ministry of Science, Innovation, and Universities' 'United States' BES-2015-071397 10 'Spanish Ministry of Economy and Competitiveness' Spain PGC2018-101370-B-100, 11 'Spanish Ministry of Economy and Competitiveness' Spain MDM2014-0435-01 12 'Other government' Spain '2017SGR- 1192' 13 # _atom_sites.entry_id 7N2J _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.205339 _atom_sites.fract_transf_matrix[1][2] 0.036162 _atom_sites.fract_transf_matrix[1][3] 0.004095 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.100933 _atom_sites.fract_transf_matrix[2][3] 0.008780 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.032739 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_alt_id _atom_site.label_comp_id _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.label_seq_id _atom_site.pdbx_PDB_ins_code _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_seq_id _atom_site.auth_comp_id _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.pdbx_PDB_model_num ATOM 1 N N . GLN A 1 1 ? -0.029 -6.868 -4.770 1.00 6.62 ? -1 GLN A N 1 ATOM 2 C CA . GLN A 1 1 ? 0.488 -5.893 -3.826 1.00 3.95 ? -1 GLN A CA 1 ATOM 3 C C . GLN A 1 1 ? -0.178 -5.999 -2.457 1.00 5.01 ? -1 GLN A C 1 ATOM 4 O O . GLN A 1 1 ? -1.403 -6.045 -2.357 1.00 7.77 ? -1 GLN A O 1 ATOM 5 C CB . GLN A 1 1 ? 0.310 -4.483 -4.391 1.00 6.79 ? -1 GLN A CB 1 ATOM 6 C CG . GLN A 1 1 ? 1.099 -3.411 -3.683 1.00 6.21 ? -1 GLN A CG 1 ATOM 7 C CD . GLN A 1 1 ? 0.738 -2.052 -4.207 1.00 5.72 ? -1 GLN A CD 1 ATOM 8 O OE1 . GLN A 1 1 ? -0.407 -1.611 -4.080 1.00 8.20 ? -1 GLN A OE1 1 ATOM 9 N NE2 . GLN A 1 1 ? 1.702 -1.381 -4.820 1.00 8.87 ? -1 GLN A NE2 1 ATOM 10 N N . TYR A 1 2 ? 0.642 -6.004 -1.409 1.00 1.70 ? 0 TYR A N 1 ATOM 11 C CA . TYR A 1 2 ? 0.201 -6.154 -0.026 1.00 1.71 ? 0 TYR A CA 1 ATOM 12 C C . TYR A 1 2 ? 0.629 -4.917 0.756 1.00 2.21 ? 0 TYR A C 1 ATOM 13 O O . TYR A 1 2 ? 1.818 -4.596 0.797 1.00 1.96 ? 0 TYR A O 1 ATOM 14 C CB . TYR A 1 2 ? 0.814 -7.433 0.560 1.00 2.07 ? 0 TYR A CB 1 ATOM 15 C CG . TYR A 1 2 ? 0.452 -7.785 1.983 1.00 1.44 ? 0 TYR A CG 1 ATOM 16 C CD1 . TYR A 1 2 ? -0.557 -8.713 2.248 1.00 0.92 ? 0 TYR A CD1 1 ATOM 17 C CD2 . TYR A 1 2 ? 1.156 -7.244 3.061 1.00 1.07 ? 0 TYR A CD2 1 ATOM 18 C CE1 . TYR A 1 2 ? -0.884 -9.071 3.545 1.00 0.52 ? 0 TYR A CE1 1 ATOM 19 C CE2 . TYR A 1 2 ? 0.833 -7.595 4.371 1.00 1.68 ? 0 TYR A CE2 1 ATOM 20 C CZ . TYR A 1 2 ? -0.184 -8.517 4.600 1.00 0.00 ? 0 TYR A CZ 1 ATOM 21 O OH . TYR A 1 2 ? -0.520 -8.883 5.887 1.00 1.06 ? 0 TYR A OH 1 ATOM 22 N N . ASN A 1 3 ? -0.335 -4.216 1.363 1.00 2.98 ? 1 ASN A N 1 ATOM 23 C CA . ASN A 1 3 ? -0.068 -2.956 2.062 1.00 1.63 ? 1 ASN A CA 1 ATOM 24 C C . ASN A 1 3 ? -0.647 -3.029 3.469 1.00 1.09 ? 1 ASN A C 1 ATOM 25 O O . ASN A 1 3 ? -1.854 -3.234 3.632 1.00 1.37 ? 1 ASN A O 1 ATOM 26 C CB . ASN A 1 3 ? -0.660 -1.751 1.317 1.00 0.93 ? 1 ASN A CB 1 ATOM 27 C CG . ASN A 1 3 ? -0.173 -1.646 -0.108 1.00 3.14 ? 1 ASN A CG 1 ATOM 28 O OD1 . ASN A 1 3 ? 1.014 -1.473 -0.357 1.00 5.15 ? 1 ASN A OD1 1 ATOM 29 N ND2 . ASN A 1 3 ? -1.097 -1.752 -1.058 1.00 5.80 ? 1 ASN A ND2 1 ATOM 30 N N . ASN A 1 4 ? 0.200 -2.827 4.479 1.00 0.73 ? 2 ASN A N 1 ATOM 31 C CA . ASN A 1 4 ? -0.240 -2.965 5.862 1.00 1.09 ? 2 ASN A CA 1 ATOM 32 C C . ASN A 1 4 ? 0.515 -1.982 6.744 1.00 1.36 ? 2 ASN A C 1 ATOM 33 O O . ASN A 1 4 ? 1.532 -1.402 6.346 1.00 0.66 ? 2 ASN A O 1 ATOM 34 C CB . ASN A 1 4 ? -0.050 -4.408 6.372 1.00 0.20 ? 2 ASN A CB 1 ATOM 35 C CG . ASN A 1 4 ? -1.231 -4.894 7.170 1.00 1.68 ? 2 ASN A CG 1 ATOM 36 O OD1 . ASN A 1 4 ? -1.835 -4.131 7.916 1.00 2.63 ? 2 ASN A OD1 1 ATOM 37 N ND2 . ASN A 1 4 ? -1.593 -6.167 6.995 1.00 0.58 ? 2 ASN A ND2 1 ATOM 38 N N . GLU A 1 5 ? -0.015 -1.790 7.952 1.00 0.42 ? 3 GLU A N 1 ATOM 39 C CA . GLU A 1 5 ? 0.660 -1.014 8.979 1.00 1.39 ? 3 GLU A CA 1 ATOM 40 C C . GLU A 1 5 ? 0.224 -1.542 10.333 1.00 0.36 ? 3 GLU A C 1 ATOM 41 O O . GLU A 1 5 ? -0.915 -1.980 10.496 1.00 1.40 ? 3 GLU A O 1 ATOM 42 C CB . GLU A 1 5 ? 0.354 0.484 8.855 1.00 1.06 ? 3 GLU A CB 1 ATOM 43 C CG . GLU A 1 5 ? -1.086 0.862 9.210 1.00 2.06 ? 3 GLU A CG 1 ATOM 44 C CD . GLU A 1 5 ? -1.277 2.358 9.448 1.00 4.03 ? 3 GLU A CD 1 ATOM 45 O OE1 . GLU A 1 5 ? -0.695 3.169 8.700 1.00 4.66 ? 3 GLU A OE1 1 ATOM 46 O OE2 . GLU A 1 5 ? -2.012 2.730 10.387 1.00 1.92 ? 3 GLU A OE2 1 ATOM 47 N N . ASN A 1 6 ? 1.146 -1.530 11.295 1.00 1.13 ? 4 ASN A N 1 ATOM 48 C CA . ASN A 1 6 ? 0.857 -2.053 12.627 1.00 2.58 ? 4 ASN A CA 1 ATOM 49 C C . ASN A 1 6 ? 1.530 -1.173 13.666 1.00 3.03 ? 4 ASN A C 1 ATOM 50 O O . ASN A 1 6 ? 2.761 -1.062 13.683 1.00 2.41 ? 4 ASN A O 1 ATOM 51 C CB . ASN A 1 6 ? 1.322 -3.515 12.772 1.00 1.31 ? 4 ASN A CB 1 ATOM 52 C CG . ASN A 1 6 ? 0.867 -4.389 11.621 1.00 1.33 ? 4 ASN A CG 1 ATOM 53 O OD1 . ASN A 1 6 ? -0.276 -4.830 11.587 1.00 3.79 ? 4 ASN A OD1 1 ATOM 54 N ND2 . ASN A 1 6 ? 1.763 -4.641 10.665 1.00 2.52 ? 4 ASN A ND2 1 ATOM 55 N N . ASN A 1 7 ? 0.731 -0.554 14.533 1.00 3.27 ? 5 ASN A N 1 ATOM 56 C CA . ASN A 1 7 ? 1.241 0.307 15.590 1.00 4.40 ? 5 ASN A CA 1 ATOM 57 C C . ASN A 1 7 ? 0.714 -0.190 16.923 1.00 4.49 ? 5 ASN A C 1 ATOM 58 O O . ASN A 1 7 ? -0.493 -0.375 17.081 1.00 3.51 ? 5 ASN A O 1 ATOM 59 C CB . ASN A 1 7 ? 0.833 1.767 15.365 1.00 4.65 ? 5 ASN A CB 1 ATOM 60 C CG . ASN A 1 7 ? 1.388 2.336 14.067 1.00 5.43 ? 5 ASN A CG 1 ATOM 61 O OD1 . ASN A 1 7 ? 0.641 2.773 13.189 1.00 8.31 ? 5 ASN A OD1 1 ATOM 62 N ND2 . ASN A 1 7 ? 2.706 2.320 13.938 1.00 4.91 ? 5 ASN A ND2 1 ATOM 63 N N . PHE A 1 8 ? 1.614 -0.384 17.884 1.00 3.36 ? 6 PHE A N 1 ATOM 64 C CA . PHE A 1 8 ? 1.255 -0.881 19.210 1.00 5.58 ? 6 PHE A CA 1 ATOM 65 C C . PHE A 1 8 ? 1.720 0.137 20.244 1.00 6.45 ? 6 PHE A C 1 ATOM 66 O O . PHE A 1 8 ? 2.923 0.372 20.391 1.00 6.07 ? 6 PHE A O 1 ATOM 67 C CB . PHE A 1 8 ? 1.878 -2.254 19.468 1.00 5.37 ? 6 PHE A CB 1 ATOM 68 C CG . PHE A 1 8 ? 1.501 -3.304 18.442 1.00 6.63 ? 6 PHE A CG 1 ATOM 69 C CD1 . PHE A 1 8 ? 0.465 -4.192 18.679 1.00 6.87 ? 6 PHE A CD1 1 ATOM 70 C CD2 . PHE A 1 8 ? 2.198 -3.410 17.246 1.00 5.24 ? 6 PHE A CD2 1 ATOM 71 C CE1 . PHE A 1 8 ? 0.128 -5.165 17.743 1.00 5.21 ? 6 PHE A CE1 1 ATOM 72 C CE2 . PHE A 1 8 ? 1.853 -4.375 16.308 1.00 9.54 ? 6 PHE A CE2 1 ATOM 73 C CZ . PHE A 1 8 ? 0.813 -5.251 16.561 1.00 4.25 ? 6 PHE A CZ 1 ATOM 74 N N . VAL A 1 9 ? 0.773 0.755 20.944 1.00 8.45 ? 7 VAL A N 1 ATOM 75 C CA . VAL A 1 9 ? 1.100 1.743 21.972 1.00 10.91 ? 7 VAL A CA 1 ATOM 76 C C . VAL A 1 9 ? 0.351 1.433 23.258 1.00 21.56 ? 7 VAL A C 1 ATOM 77 O O . VAL A 1 9 ? 0.776 1.873 24.325 1.00 23.19 ? 7 VAL A O 1 ATOM 78 C CB . VAL A 1 9 ? 0.785 3.176 21.515 1.00 12.52 ? 7 VAL A CB 1 ATOM 79 C CG1 . VAL A 1 9 ? 1.553 4.178 22.363 1.00 14.42 ? 7 VAL A CG1 1 ATOM 80 C CG2 . VAL A 1 9 ? 1.124 3.352 20.052 1.00 14.63 ? 7 VAL A CG2 1 ATOM 81 O OXT . VAL A 1 9 ? -0.682 0.753 23.262 1.00 16.75 ? 7 VAL A OXT 1 HETATM 82 O O . HOH B 2 . ? 1.310 0.962 -1.663 1.00 5.73 ? 101 HOH A O 1 #