data_7N2I # _entry.id 7N2I # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.392 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7N2I pdb_00007n2i 10.2210/pdb7n2i/pdb WWPDB D_1000254609 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2022-06-01 2 'Structure model' 1 1 2023-05-10 3 'Structure model' 1 2 2024-05-22 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' chem_comp_atom 4 3 'Structure model' chem_comp_bond # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_CSD' 4 2 'Structure model' '_citation.journal_id_ISSN' 5 2 'Structure model' '_citation.journal_volume' 6 2 'Structure model' '_citation.page_first' 7 2 'Structure model' '_citation.page_last' 8 2 'Structure model' '_citation.pdbx_database_id_DOI' 9 2 'Structure model' '_citation.pdbx_database_id_PubMed' 10 2 'Structure model' '_citation.title' 11 2 'Structure model' '_citation.year' 12 2 'Structure model' '_citation_author.identifier_ORCID' 13 2 'Structure model' '_citation_author.name' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 7N2I _pdbx_database_status.recvd_initial_deposition_date 2021-05-29 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Richards, L.S.' 1 0000-0002-1694-1652 'Flores, M.D.' 2 0000-0002-4483-087X 'Zee, C.T.' 3 0000-0002-6630-706X 'Glynn, C.' 4 0000-0002-2197-2357 'Gallagher-Jones, M.' 5 0000-0003-4227-917X 'Sawaya, M.R.' 6 0000-0003-0874-9043 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Acs Bio Med Chem Au' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2694-2437 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 3 _citation.language ? _citation.page_first 201 _citation.page_last 210 _citation.title 'Fragment-Based Ab Initio Phasing of Peptidic Nanocrystals by MicroED.' _citation.year 2023 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1021/acsbiomedchemau.2c00082 _citation.pdbx_database_id_PubMed 37096030 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Richards, L.S.' 1 ? primary 'Flores, M.D.' 2 ? primary 'Millan, C.' 3 ? primary 'Glynn, C.' 4 ? primary 'Zee, C.T.' 5 ? primary 'Sawaya, M.R.' 6 0000-0003-0874-9043 primary 'Gallagher-Jones, M.' 7 ? primary 'Borges, R.J.' 8 ? primary 'Uson, I.' 9 ? primary 'Rodriguez, J.A.' 10 0000-0002-0248-4964 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn LECT2 942.023 1 ? ? 'residues 45-53' ? 2 water nat water 18.015 2 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GSTVYAPFT _entity_poly.pdbx_seq_one_letter_code_can GSTVYAPFT _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 THR n 1 4 VAL n 1 5 TYR n 1 6 ALA n 1 7 PRO n 1 8 PHE n 1 9 THR n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 9 _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 0 GLY GLY A . n A 1 2 SER 2 1 1 SER SER A . n A 1 3 THR 3 2 2 THR THR A . n A 1 4 VAL 4 3 3 VAL VAL A . n A 1 5 TYR 5 4 4 TYR TYR A . n A 1 6 ALA 6 5 5 ALA ALA A . n A 1 7 PRO 7 6 6 PRO PRO A . n A 1 8 PHE 8 7 7 PHE PHE A . n A 1 9 THR 9 8 8 THR THR A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 101 2 HOH HOH A . B 2 HOH 2 102 1 HOH HOH A . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data scaling' ? ? 'Wolfgang Kabsch' ? ? ? ? ? ? http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html ? XSCALE ? ? package . 1 ? refinement ? ? 'Paul D. Adams' PDAdams@lbl.gov ? ? ? ? C++ http://www.phenix-online.org/ ? PHENIX ? ? package . 2 ? 'data extraction' ? ? PDB deposit@deposit.rcsb.org 'Oct. 31, 2020' ? ? ? C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ ? PDB_EXTRACT ? ? package 3.27 3 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 105.010 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 7N2I _cell.details ? _cell.formula_units_Z ? _cell.length_a 58.400 _cell.length_a_esd ? _cell.length_b 4.730 _cell.length_b_esd ? _cell.length_c 19.630 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 4 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7N2I _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7N2I _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON CRYSTALLOGRAPHY' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _diffrn.ambient_environment ? _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l ? _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type electron # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _reflns.B_iso_Wilson_estimate 15.813 _reflns.entry_id 7N2I _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.400 _reflns.d_resolution_low 7.754 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 986 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 80.000 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 4.218 _reflns.pdbx_Rmerge_I_obs 0.159 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 5.160 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 0.865 _reflns.pdbx_scaling_rejects 1 _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.178 _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all 4159 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.987 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_CC_star _reflns_shell.pdbx_R_split _reflns_shell.pdbx_percent_possible_ellipsoidal _reflns_shell.pdbx_percent_possible_spherical _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous _reflns_shell.pdbx_percent_possible_spherical_anomalous _reflns_shell.pdbx_redundancy_anomalous _reflns_shell.pdbx_CC_half_anomalous _reflns_shell.pdbx_absDiff_over_sigma_anomalous _reflns_shell.pdbx_percent_possible_anomalous 1.400 1.480 ? 2.560 ? 622 180 ? 149 82.800 ? ? ? ? 0.385 ? ? ? ? ? ? ? ? 4.174 ? ? ? ? 0.436 ? ? 1 1 0.895 ? ? ? ? ? ? ? ? ? ? 1.480 1.570 ? 3.970 ? 745 180 ? 153 85.000 ? ? ? ? 0.272 ? ? ? ? ? ? ? ? 4.869 ? ? ? ? 0.301 ? ? 2 1 0.929 ? ? ? ? ? ? ? ? ? ? 1.570 1.680 ? 3.800 ? 441 136 ? 108 79.400 ? ? ? ? 0.266 ? ? ? ? ? ? ? ? 4.083 ? ? ? ? 0.303 ? ? 3 1 0.951 ? ? ? ? ? ? ? ? ? ? 1.680 1.810 ? 4.420 ? 428 134 ? 109 81.300 ? ? ? ? 0.227 ? ? ? ? ? ? ? ? 3.927 ? ? ? ? 0.256 ? ? 4 1 0.962 ? ? ? ? ? ? ? ? ? ? 1.810 1.980 ? 5.830 ? 486 137 ? 109 79.600 ? ? ? ? 0.210 ? ? ? ? ? ? ? ? 4.459 ? ? ? ? 0.234 ? ? 5 1 0.963 ? ? ? ? ? ? ? ? ? ? 1.980 2.220 ? 6.640 ? 450 126 ? 103 81.700 ? ? ? ? 0.175 ? ? ? ? ? ? ? ? 4.369 ? ? ? ? 0.196 ? ? 6 1 0.975 ? ? ? ? ? ? ? ? ? ? 2.220 2.560 ? 6.770 ? 364 110 ? 87 79.100 ? ? ? ? 0.144 ? ? ? ? ? ? ? ? 4.184 ? ? ? ? 0.161 ? ? 7 1 0.986 ? ? ? ? ? ? ? ? ? ? 2.560 3.130 ? 6.750 ? 221 90 ? 73 81.100 ? ? ? ? 0.141 ? ? ? ? ? ? ? ? 3.027 ? ? ? ? 0.169 ? ? 8 1 0.981 ? ? ? ? ? ? ? ? ? ? 3.130 4.430 ? 8.830 ? 317 90 ? 71 78.900 ? ? ? ? 0.148 ? ? ? ? ? ? ? ? 4.465 ? ? ? ? 0.163 ? ? 9 1 0.972 ? ? ? ? ? ? ? ? ? ? 4.430 7.754 ? 7.500 ? 85 49 ? 24 49.000 ? ? ? ? 0.092 ? ? ? ? ? ? ? ? 3.542 ? ? ? ? 0.101 ? ? 10 1 0.997 ? ? ? ? ? ? ? ? ? ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max 24.810 _refine.B_iso_mean 8.7768 _refine.B_iso_min 3.960 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 7N2I _refine.pdbx_refine_id 'ELECTRON CRYSTALLOGRAPHY' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.4020 _refine.ls_d_res_low 7.7540 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 985 _refine.ls_number_reflns_R_free 89 _refine.ls_number_reflns_R_work 896 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 81.2000 _refine.ls_percent_reflns_R_free 9.0400 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1938 _refine.ls_R_factor_R_free 0.1923 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1936 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.400 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct ? _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 22.6500 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.1300 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'ELECTRON CRYSTALLOGRAPHY' _refine_hist.cycle_id final _refine_hist.details ? _refine_hist.d_res_high 1.4020 _refine_hist.d_res_low 7.7540 _refine_hist.number_atoms_solvent 2 _refine_hist.number_atoms_total 69 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total 9 _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent 12.66 _refine_hist.pdbx_number_atoms_protein 67 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'ELECTRON CRYSTALLOGRAPHY' 1.4024 1.4522 . . 9 97 85.0000 . . . 0.4549 0.0000 0.2652 . . . . . . . . . . . 'ELECTRON CRYSTALLOGRAPHY' 1.4522 1.5099 . . 10 95 84.0000 . . . 0.1986 0.0000 0.2414 . . . . . . . . . . . 'ELECTRON CRYSTALLOGRAPHY' 1.5099 1.5781 . . 10 99 88.0000 . . . 0.2996 0.0000 0.2217 . . . . . . . . . . . 'ELECTRON CRYSTALLOGRAPHY' 1.5781 1.6605 . . 7 72 78.0000 . . . 0.2548 0.0000 0.2465 . . . . . . . . . . . 'ELECTRON CRYSTALLOGRAPHY' 1.6605 1.7634 . . 8 79 84.0000 . . . 0.3715 0.0000 0.2201 . . . . . . . . . . . 'ELECTRON CRYSTALLOGRAPHY' 1.7634 1.8977 . . 8 81 80.0000 . . . 0.1272 0.0000 0.2457 . . . . . . . . . . . 'ELECTRON CRYSTALLOGRAPHY' 1.8977 2.0853 . . 9 94 81.0000 . . . 0.2017 0.0000 0.2001 . . . . . . . . . . . 'ELECTRON CRYSTALLOGRAPHY' 2.0853 2.3794 . . 10 101 80.0000 . . . 0.1673 0.0000 0.1996 . . . . . . . . . . . 'ELECTRON CRYSTALLOGRAPHY' 2.3794 2.9695 . . 7 75 77.0000 . . . 0.1803 0.0000 0.1834 . . . . . . . . . . . 'ELECTRON CRYSTALLOGRAPHY' 2.9695 7.7540 . . 11 103 77.0000 . . . 0.1280 0.0000 0.1354 . . . . . . . . . . . # _struct.entry_id 7N2I _struct.title 'MicroED structure of human LECT2 (45-53) phased by ARCIMBOLDO-BORGES' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7N2I _struct_keywords.text 'MicroED, amyloid, LECT2, PROTEIN FIBRIL' _struct_keywords.pdbx_keywords 'PROTEIN FIBRIL' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 7N2I _struct_ref.pdbx_db_accession 7N2I _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 7N2I _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 9 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 7N2I _struct_ref_seq.db_align_beg 0 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 8 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 0 _struct_ref_seq.pdbx_auth_seq_align_end 8 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 0 ? 1 MORE 0 ? 1 'SSA (A^2)' 1220 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ALA _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 5 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -145.68 _pdbx_validate_torsion.psi 56.62 # _em_3d_fitting.entry_id 7N2I _em_3d_fitting.id 1 _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_protocol OTHER _em_3d_fitting.ref_space ? _em_3d_fitting.target_criteria ? _em_3d_fitting.method ? # _em_3d_reconstruction.entry_id 7N2I _em_3d_reconstruction.id 1 _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.details ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.num_particles ? _em_3d_reconstruction.resolution ? _em_3d_reconstruction.resolution_method 'DIFFRACTION PATTERN/LAYERLINES' _em_3d_reconstruction.symmetry_type '3D CRYSTAL' _em_3d_reconstruction.method ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.magnification_calibration ? # _em_buffer.id 1 _em_buffer.details ? _em_buffer.pH 4.6 _em_buffer.specimen_id 1 _em_buffer.name ? # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.details ? _em_entity_assembly.name 'Steric zipper structure of a peptide (45-53) of human LECT2' _em_entity_assembly.source 'MULTIPLE SOURCES' _em_entity_assembly.type COMPLEX _em_entity_assembly.entity_id_list 1 _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? # _em_imaging.id 1 _em_imaging.entry_id 7N2I _em_imaging.accelerating_voltage 200 _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.calibrated_defocus_max ? _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_magnification ? _em_imaging.cryogen ? _em_imaging.details ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.microscope_model 'FEI TALOS ARCTICA' _em_imaging.mode DIFFRACTION _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_max ? _em_imaging.nominal_defocus_min ? _em_imaging.nominal_magnification ? _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? _em_imaging.residual_tilt ? _em_imaging.specimen_holder_model ? _em_imaging.specimen_id 1 _em_imaging.citation_id ? _em_imaging.date ? _em_imaging.temperature ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.astigmatism ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? _em_imaging.specimen_holder_type ? # _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.chamber_temperature ? _em_vitrification.cryogen_name ETHANE _em_vitrification.details ? _em_vitrification.humidity ? _em_vitrification.instrument ? _em_vitrification.entry_id 7N2I _em_vitrification.citation_id ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 7N2I _em_experiment.id 1 _em_experiment.aggregation_state '3D ARRAY' _em_experiment.reconstruction_method CRYSTALLOGRAPHY _em_experiment.entity_assembly_id 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 GLY N N N N 14 GLY CA C N N 15 GLY C C N N 16 GLY O O N N 17 GLY OXT O N N 18 GLY H H N N 19 GLY H2 H N N 20 GLY HA2 H N N 21 GLY HA3 H N N 22 GLY HXT H N N 23 HOH O O N N 24 HOH H1 H N N 25 HOH H2 H N N 26 PHE N N N N 27 PHE CA C N S 28 PHE C C N N 29 PHE O O N N 30 PHE CB C N N 31 PHE CG C Y N 32 PHE CD1 C Y N 33 PHE CD2 C Y N 34 PHE CE1 C Y N 35 PHE CE2 C Y N 36 PHE CZ C Y N 37 PHE OXT O N N 38 PHE H H N N 39 PHE H2 H N N 40 PHE HA H N N 41 PHE HB2 H N N 42 PHE HB3 H N N 43 PHE HD1 H N N 44 PHE HD2 H N N 45 PHE HE1 H N N 46 PHE HE2 H N N 47 PHE HZ H N N 48 PHE HXT H N N 49 PRO N N N N 50 PRO CA C N S 51 PRO C C N N 52 PRO O O N N 53 PRO CB C N N 54 PRO CG C N N 55 PRO CD C N N 56 PRO OXT O N N 57 PRO H H N N 58 PRO HA H N N 59 PRO HB2 H N N 60 PRO HB3 H N N 61 PRO HG2 H N N 62 PRO HG3 H N N 63 PRO HD2 H N N 64 PRO HD3 H N N 65 PRO HXT H N N 66 SER N N N N 67 SER CA C N S 68 SER C C N N 69 SER O O N N 70 SER CB C N N 71 SER OG O N N 72 SER OXT O N N 73 SER H H N N 74 SER H2 H N N 75 SER HA H N N 76 SER HB2 H N N 77 SER HB3 H N N 78 SER HG H N N 79 SER HXT H N N 80 THR N N N N 81 THR CA C N S 82 THR C C N N 83 THR O O N N 84 THR CB C N R 85 THR OG1 O N N 86 THR CG2 C N N 87 THR OXT O N N 88 THR H H N N 89 THR H2 H N N 90 THR HA H N N 91 THR HB H N N 92 THR HG1 H N N 93 THR HG21 H N N 94 THR HG22 H N N 95 THR HG23 H N N 96 THR HXT H N N 97 TYR N N N N 98 TYR CA C N S 99 TYR C C N N 100 TYR O O N N 101 TYR CB C N N 102 TYR CG C Y N 103 TYR CD1 C Y N 104 TYR CD2 C Y N 105 TYR CE1 C Y N 106 TYR CE2 C Y N 107 TYR CZ C Y N 108 TYR OH O N N 109 TYR OXT O N N 110 TYR H H N N 111 TYR H2 H N N 112 TYR HA H N N 113 TYR HB2 H N N 114 TYR HB3 H N N 115 TYR HD1 H N N 116 TYR HD2 H N N 117 TYR HE1 H N N 118 TYR HE2 H N N 119 TYR HH H N N 120 TYR HXT H N N 121 VAL N N N N 122 VAL CA C N S 123 VAL C C N N 124 VAL O O N N 125 VAL CB C N N 126 VAL CG1 C N N 127 VAL CG2 C N N 128 VAL OXT O N N 129 VAL H H N N 130 VAL H2 H N N 131 VAL HA H N N 132 VAL HB H N N 133 VAL HG11 H N N 134 VAL HG12 H N N 135 VAL HG13 H N N 136 VAL HG21 H N N 137 VAL HG22 H N N 138 VAL HG23 H N N 139 VAL HXT H N N 140 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 GLY N CA sing N N 13 GLY N H sing N N 14 GLY N H2 sing N N 15 GLY CA C sing N N 16 GLY CA HA2 sing N N 17 GLY CA HA3 sing N N 18 GLY C O doub N N 19 GLY C OXT sing N N 20 GLY OXT HXT sing N N 21 HOH O H1 sing N N 22 HOH O H2 sing N N 23 PHE N CA sing N N 24 PHE N H sing N N 25 PHE N H2 sing N N 26 PHE CA C sing N N 27 PHE CA CB sing N N 28 PHE CA HA sing N N 29 PHE C O doub N N 30 PHE C OXT sing N N 31 PHE CB CG sing N N 32 PHE CB HB2 sing N N 33 PHE CB HB3 sing N N 34 PHE CG CD1 doub Y N 35 PHE CG CD2 sing Y N 36 PHE CD1 CE1 sing Y N 37 PHE CD1 HD1 sing N N 38 PHE CD2 CE2 doub Y N 39 PHE CD2 HD2 sing N N 40 PHE CE1 CZ doub Y N 41 PHE CE1 HE1 sing N N 42 PHE CE2 CZ sing Y N 43 PHE CE2 HE2 sing N N 44 PHE CZ HZ sing N N 45 PHE OXT HXT sing N N 46 PRO N CA sing N N 47 PRO N CD sing N N 48 PRO N H sing N N 49 PRO CA C sing N N 50 PRO CA CB sing N N 51 PRO CA HA sing N N 52 PRO C O doub N N 53 PRO C OXT sing N N 54 PRO CB CG sing N N 55 PRO CB HB2 sing N N 56 PRO CB HB3 sing N N 57 PRO CG CD sing N N 58 PRO CG HG2 sing N N 59 PRO CG HG3 sing N N 60 PRO CD HD2 sing N N 61 PRO CD HD3 sing N N 62 PRO OXT HXT sing N N 63 SER N CA sing N N 64 SER N H sing N N 65 SER N H2 sing N N 66 SER CA C sing N N 67 SER CA CB sing N N 68 SER CA HA sing N N 69 SER C O doub N N 70 SER C OXT sing N N 71 SER CB OG sing N N 72 SER CB HB2 sing N N 73 SER CB HB3 sing N N 74 SER OG HG sing N N 75 SER OXT HXT sing N N 76 THR N CA sing N N 77 THR N H sing N N 78 THR N H2 sing N N 79 THR CA C sing N N 80 THR CA CB sing N N 81 THR CA HA sing N N 82 THR C O doub N N 83 THR C OXT sing N N 84 THR CB OG1 sing N N 85 THR CB CG2 sing N N 86 THR CB HB sing N N 87 THR OG1 HG1 sing N N 88 THR CG2 HG21 sing N N 89 THR CG2 HG22 sing N N 90 THR CG2 HG23 sing N N 91 THR OXT HXT sing N N 92 TYR N CA sing N N 93 TYR N H sing N N 94 TYR N H2 sing N N 95 TYR CA C sing N N 96 TYR CA CB sing N N 97 TYR CA HA sing N N 98 TYR C O doub N N 99 TYR C OXT sing N N 100 TYR CB CG sing N N 101 TYR CB HB2 sing N N 102 TYR CB HB3 sing N N 103 TYR CG CD1 doub Y N 104 TYR CG CD2 sing Y N 105 TYR CD1 CE1 sing Y N 106 TYR CD1 HD1 sing N N 107 TYR CD2 CE2 doub Y N 108 TYR CD2 HD2 sing N N 109 TYR CE1 CZ doub Y N 110 TYR CE1 HE1 sing N N 111 TYR CE2 CZ sing Y N 112 TYR CE2 HE2 sing N N 113 TYR CZ OH sing N N 114 TYR OH HH sing N N 115 TYR OXT HXT sing N N 116 VAL N CA sing N N 117 VAL N H sing N N 118 VAL N H2 sing N N 119 VAL CA C sing N N 120 VAL CA CB sing N N 121 VAL CA HA sing N N 122 VAL C O doub N N 123 VAL C OXT sing N N 124 VAL CB CG1 sing N N 125 VAL CB CG2 sing N N 126 VAL CB HB sing N N 127 VAL CG1 HG11 sing N N 128 VAL CG1 HG12 sing N N 129 VAL CG1 HG13 sing N N 130 VAL CG2 HG21 sing N N 131 VAL CG2 HG22 sing N N 132 VAL CG2 HG23 sing N N 133 VAL OXT HXT sing N N 134 # _em_3d_crystal_entity.id 1 _em_3d_crystal_entity.image_processing_id 1 _em_3d_crystal_entity.angle_alpha 90 _em_3d_crystal_entity.angle_beta 105 _em_3d_crystal_entity.angle_gamma 90 _em_3d_crystal_entity.length_a 58.4 _em_3d_crystal_entity.length_b 4.73 _em_3d_crystal_entity.length_c 19.63 _em_3d_crystal_entity.space_group_name C2 _em_3d_crystal_entity.space_group_num 5 # _em_ctf_correction.id 1 _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.type NONE _em_ctf_correction.details ? # _em_diffraction.id 1 _em_diffraction.camera_length 1000 _em_diffraction.imaging_id 1 _em_diffraction.tilt_angle_list ? # loop_ _em_diffraction_shell.id _em_diffraction_shell.em_diffraction_stats_id _em_diffraction_shell.fourier_space_coverage _em_diffraction_shell.high_resolution _em_diffraction_shell.low_resolution _em_diffraction_shell.multiplicity _em_diffraction_shell.num_structure_factors _em_diffraction_shell.phase_residual 1 1 77 7.7545 2.9695 3.54 103 0.01 2 1 77 2.9695 2.3794 4.46 75 0.01 3 1 80 2.3794 2.0853 3.02 101 0.01 4 1 81 2.0853 1.8977 4.18 94 0.01 5 1 80 1.8977 1.7634 4.37 81 0.01 6 1 84 1.7634 1.6605 4.46 79 0.01 7 1 78 1.6605 1.5781 3.93 72 0.01 8 1 88 1.5781 1.5099 4.08 99 0.01 9 1 84 1.5099 1.4522 4.87 95 0.01 10 1 85 1.4522 1.4024 4.17 97 0.01 # _em_diffraction_stats.id 1 _em_diffraction_stats.details ;Phase error and phase residual statistics are not routinely reported for crystallographic structures. No imaging was used. The phases were obtained by an ab initio crystallographic method described in our manuscript ; _em_diffraction_stats.image_processing_id 1 _em_diffraction_stats.fourier_space_coverage 80 _em_diffraction_stats.high_resolution 1.40 _em_diffraction_stats.num_intensities_measured 4159 _em_diffraction_stats.num_structure_factors 986 _em_diffraction_stats.overall_phase_error 22.72 _em_diffraction_stats.overall_phase_residual 0.01 _em_diffraction_stats.phase_error_rejection_criteria 0 _em_diffraction_stats.r_merge 15.9 _em_diffraction_stats.r_sym 15.9 # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.experimental_flag YES _em_entity_assembly_molwt.units KILODALTONS/NANOMETER _em_entity_assembly_molwt.value 0.942 # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.avg_electron_dose_per_image 0.05 _em_image_recording.average_exposure_time ? _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'TVIPS TEMCAM-F416 (4k x 4k)' _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.id _em_software.category _em_software.details _em_software.name _em_software.version _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id 1 'IMAGE ACQUISITION' ? ? ? ? ? 1 2 MASKING ? ? ? ? ? ? 3 'CTF CORRECTION' ? ? ? 1 ? ? 4 'LAYERLINE INDEXING' ? ? ? ? ? ? 5 'DIFFRACTION INDEXING' ? ? ? ? ? ? 6 'MODEL FITTING' ? ? ? ? 1 ? 7 OTHER ? ? ? ? ? ? 8 'MODEL REFINEMENT' ? ? ? ? 1 ? 9 'MOLECULAR REPLACEMENT' ? ? ? 1 ? ? 10 'LATTICE DISTORTION CORRECTION' ? ? ? 1 ? ? 11 'SYMMETRY DETERMINATION' ? ? ? 1 ? ? 12 'CRYSTALLOGRAPHY MERGING' ? ? ? 1 ? ? 13 RECONSTRUCTION ? ? ? 1 ? ? # _em_specimen.id 1 _em_specimen.experiment_id 1 _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'National Science Foundation (NSF, United States)' 'United States' DMR-1548924 1 'Department of Energy (DOE, United States)' 'United States' DE-FC02-02ER63421 2 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' GM128867 3 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' P41GM136508 4 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' GM136614 5 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' GM007185 6 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' AI143368 7 'Sao Paulo Research Foundation (FAPESP)' 'United States' 16/24191-8 8 'Sao Paulo Research Foundation (FAPESP)' Brazil 17/13485-3 9 'Spanish Ministry of Science, Innovation, and Universities' 'United States' BES-2015-071397 10 'Spanish Ministry of Economy and Competitiveness' Spain PGC2018-101370-B-100, 11 'Spanish Ministry of Economy and Competitiveness' Spain MDM2014-0435-01 12 'Other government' Spain '2017SGR- 1192' 13 # _atom_sites.entry_id 7N2I _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.017123 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.004590 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.211416 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.052741 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_alt_id _atom_site.label_comp_id _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.label_seq_id _atom_site.pdbx_PDB_ins_code _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_seq_id _atom_site.auth_comp_id _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.pdbx_PDB_model_num ATOM 1 N N . GLY A 1 1 ? 26.606 3.420 4.944 1.00 17.40 ? 0 GLY A N 1 ATOM 2 C CA . GLY A 1 1 ? 25.680 3.579 6.048 1.00 13.53 ? 0 GLY A CA 1 ATOM 3 C C . GLY A 1 1 ? 24.611 2.507 6.061 1.00 9.49 ? 0 GLY A C 1 ATOM 4 O O . GLY A 1 1 ? 24.436 1.777 5.091 1.00 14.50 ? 0 GLY A O 1 ATOM 5 N N . SER A 1 2 ? 23.900 2.405 7.174 1.00 9.09 ? 1 SER A N 1 ATOM 6 C CA . SER A 1 2 ? 22.770 1.498 7.263 1.00 6.71 ? 1 SER A CA 1 ATOM 7 C C . SER A 1 2 ? 21.495 2.223 6.868 1.00 5.68 ? 1 SER A C 1 ATOM 8 O O . SER A 1 2 ? 21.431 3.446 6.835 1.00 6.97 ? 1 SER A O 1 ATOM 9 C CB . SER A 1 2 ? 22.640 0.931 8.674 1.00 10.35 ? 1 SER A CB 1 ATOM 10 O OG . SER A 1 2 ? 23.807 0.214 9.030 1.00 10.87 ? 1 SER A OG 1 ATOM 11 N N . THR A 1 3 ? 20.472 1.448 6.570 1.00 6.39 ? 2 THR A N 1 ATOM 12 C CA . THR A 1 3 ? 19.253 1.994 6.017 1.00 5.89 ? 2 THR A CA 1 ATOM 13 C C . THR A 1 3 ? 18.078 1.290 6.661 1.00 6.11 ? 2 THR A C 1 ATOM 14 O O . THR A 1 3 ? 18.082 0.067 6.803 1.00 6.07 ? 2 THR A O 1 ATOM 15 C CB . THR A 1 3 ? 19.199 1.731 4.506 1.00 8.91 ? 2 THR A CB 1 ATOM 16 O OG1 . THR A 1 3 ? 20.373 2.268 3.884 1.00 10.62 ? 2 THR A OG1 1 ATOM 17 C CG2 . THR A 1 3 ? 17.968 2.356 3.890 1.00 9.10 ? 2 THR A CG2 1 ATOM 18 N N . VAL A 1 4 ? 17.080 2.066 7.061 1.00 6.44 ? 3 VAL A N 1 ATOM 19 C CA . VAL A 1 4 ? 15.739 1.552 7.271 1.00 4.92 ? 3 VAL A CA 1 ATOM 20 C C . VAL A 1 4 ? 14.894 2.140 6.162 1.00 4.88 ? 3 VAL A C 1 ATOM 21 O O . VAL A 1 4 ? 14.752 3.364 6.067 1.00 5.53 ? 3 VAL A O 1 ATOM 22 C CB . VAL A 1 4 ? 15.186 1.912 8.653 1.00 5.32 ? 3 VAL A CB 1 ATOM 23 C CG1 . VAL A 1 4 ? 13.693 1.598 8.719 1.00 6.64 ? 3 VAL A CG1 1 ATOM 24 C CG2 . VAL A 1 4 ? 15.948 1.149 9.725 1.00 5.37 ? 3 VAL A CG2 1 ATOM 25 N N . TYR A 1 5 ? 14.396 1.285 5.294 1.00 5.33 ? 4 TYR A N 1 ATOM 26 C CA . TYR A 1 5 ? 13.564 1.697 4.181 1.00 4.07 ? 4 TYR A CA 1 ATOM 27 C C . TYR A 1 5 ? 12.164 1.251 4.547 1.00 4.54 ? 4 TYR A C 1 ATOM 28 O O . TYR A 1 5 ? 11.860 0.055 4.500 1.00 4.61 ? 4 TYR A O 1 ATOM 29 C CB . TYR A 1 5 ? 14.026 1.006 2.907 1.00 6.66 ? 4 TYR A CB 1 ATOM 30 C CG . TYR A 1 5 ? 13.195 1.352 1.701 1.00 5.78 ? 4 TYR A CG 1 ATOM 31 C CD1 . TYR A 1 5 ? 13.546 2.405 0.876 1.00 7.04 ? 4 TYR A CD1 1 ATOM 32 C CD2 . TYR A 1 5 ? 12.060 0.628 1.384 1.00 6.40 ? 4 TYR A CD2 1 ATOM 33 C CE1 . TYR A 1 5 ? 12.799 2.713 -0.230 1.00 6.27 ? 4 TYR A CE1 1 ATOM 34 C CE2 . TYR A 1 5 ? 11.299 0.939 0.278 1.00 8.08 ? 4 TYR A CE2 1 ATOM 35 C CZ . TYR A 1 5 ? 11.668 1.988 -0.519 1.00 9.14 ? 4 TYR A CZ 1 ATOM 36 O OH . TYR A 1 5 ? 10.909 2.298 -1.621 1.00 9.33 ? 4 TYR A OH 1 ATOM 37 N N . ALA A 1 6 ? 11.329 2.195 4.931 1.00 5.25 ? 5 ALA A N 1 ATOM 38 C CA . ALA A 1 6 ? 10.005 1.805 5.369 1.00 4.19 ? 5 ALA A CA 1 ATOM 39 C C . ALA A 1 6 ? 8.974 2.852 4.979 1.00 3.96 ? 5 ALA A C 1 ATOM 40 O O . ALA A 1 6 ? 8.249 3.349 5.847 1.00 5.30 ? 5 ALA A O 1 ATOM 41 C CB . ALA A 1 6 ? 10.004 1.594 6.879 1.00 4.55 ? 5 ALA A CB 1 ATOM 42 N N . PRO A 1 7 ? 8.854 3.191 3.696 1.00 6.32 ? 6 PRO A N 1 ATOM 43 C CA . PRO A 1 7 ? 7.727 4.027 3.279 1.00 4.06 ? 6 PRO A CA 1 ATOM 44 C C . PRO A 1 7 ? 6.441 3.306 3.620 1.00 4.35 ? 6 PRO A C 1 ATOM 45 O O . PRO A 1 7 ? 6.356 2.082 3.547 1.00 4.89 ? 6 PRO A O 1 ATOM 46 C CB . PRO A 1 7 ? 7.909 4.131 1.765 1.00 6.70 ? 6 PRO A CB 1 ATOM 47 C CG . PRO A 1 7 ? 8.585 2.862 1.402 1.00 5.20 ? 6 PRO A CG 1 ATOM 48 C CD . PRO A 1 7 ? 9.543 2.609 2.534 1.00 5.92 ? 6 PRO A CD 1 ATOM 49 N N . PHE A 1 8 ? 5.431 4.064 4.009 1.00 6.10 ? 7 PHE A N 1 ATOM 50 C CA . PHE A 1 8 ? 4.224 3.384 4.421 1.00 6.14 ? 7 PHE A CA 1 ATOM 51 C C . PHE A 1 8 ? 2.996 4.209 4.106 1.00 8.04 ? 7 PHE A C 1 ATOM 52 O O . PHE A 1 8 ? 3.073 5.409 3.841 1.00 7.03 ? 7 PHE A O 1 ATOM 53 C CB . PHE A 1 8 ? 4.272 2.963 5.888 1.00 7.89 ? 7 PHE A CB 1 ATOM 54 C CG . PHE A 1 8 ? 4.344 4.099 6.874 1.00 8.64 ? 7 PHE A CG 1 ATOM 55 C CD1 . PHE A 1 8 ? 3.188 4.616 7.439 1.00 9.74 ? 7 PHE A CD1 1 ATOM 56 C CD2 . PHE A 1 8 ? 5.567 4.593 7.296 1.00 8.41 ? 7 PHE A CD2 1 ATOM 57 C CE1 . PHE A 1 8 ? 3.249 5.631 8.373 1.00 8.14 ? 7 PHE A CE1 1 ATOM 58 C CE2 . PHE A 1 8 ? 5.633 5.614 8.230 1.00 7.87 ? 7 PHE A CE2 1 ATOM 59 C CZ . PHE A 1 8 ? 4.475 6.124 8.775 1.00 8.52 ? 7 PHE A CZ 1 ATOM 60 N N . THR A 1 9 ? 1.860 3.522 4.105 1.00 10.75 ? 8 THR A N 1 ATOM 61 C CA . THR A 1 9 ? 0.557 4.153 4.058 1.00 16.25 ? 8 THR A CA 1 ATOM 62 C C . THR A 1 9 ? -0.311 3.374 5.031 1.00 20.10 ? 8 THR A C 1 ATOM 63 O O . THR A 1 9 ? 0.118 2.338 5.543 1.00 18.08 ? 8 THR A O 1 ATOM 64 C CB . THR A 1 9 ? -0.084 4.082 2.657 1.00 22.95 ? 8 THR A CB 1 ATOM 65 O OG1 . THR A 1 9 ? -0.391 2.720 2.339 1.00 24.81 ? 8 THR A OG1 1 ATOM 66 C CG2 . THR A 1 9 ? 0.848 4.652 1.596 1.00 24.19 ? 8 THR A CG2 1 ATOM 67 O OXT . THR A 1 9 ? -1.441 3.752 5.332 1.00 21.92 ? 8 THR A OXT 1 HETATM 68 O O . HOH B 2 . ? 20.665 3.540 1.987 1.00 13.76 ? 101 HOH A O 1 HETATM 69 O O . HOH B 2 . ? 4.629 1.501 1.407 1.00 11.55 ? 102 HOH A O 1 #