data_7N2K # _entry.id 7N2K # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.392 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7N2K pdb_00007n2k 10.2210/pdb7n2k/pdb WWPDB D_1000254650 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2022-06-01 2 'Structure model' 1 1 2023-05-10 3 'Structure model' 1 2 2024-05-22 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' chem_comp_atom 4 3 'Structure model' chem_comp_bond # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_CSD' 4 2 'Structure model' '_citation.journal_id_ISSN' 5 2 'Structure model' '_citation.journal_volume' 6 2 'Structure model' '_citation.page_first' 7 2 'Structure model' '_citation.page_last' 8 2 'Structure model' '_citation.pdbx_database_id_DOI' 9 2 'Structure model' '_citation.pdbx_database_id_PubMed' 10 2 'Structure model' '_citation.title' 11 2 'Structure model' '_citation.year' 12 2 'Structure model' '_citation_author.identifier_ORCID' 13 2 'Structure model' '_citation_author.name' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 7N2K _pdbx_database_status.recvd_initial_deposition_date 2021-05-29 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Flores, M.D.' 1 0000-0002-4483-087X 'Richards, L.S.' 2 0000-0002-1694-1652 'Zee, C.T.' 3 0000-0002-6630-706X 'Glynn, C.' 4 0000-0002-2197-2357 'Gallagher-Jones, M.' 5 0000-0003-4227-917X 'Sawaya, M.R.' 6 0000-0003-0874-9043 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Acs Bio Med Chem Au' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2694-2437 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 3 _citation.language ? _citation.page_first 201 _citation.page_last 210 _citation.title 'Fragment-Based Ab Initio Phasing of Peptidic Nanocrystals by MicroED.' _citation.year 2023 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1021/acsbiomedchemau.2c00082 _citation.pdbx_database_id_PubMed 37096030 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Richards, L.S.' 1 ? primary 'Flores, M.D.' 2 ? primary 'Millan, C.' 3 ? primary 'Glynn, C.' 4 ? primary 'Zee, C.T.' 5 ? primary 'Sawaya, M.R.' 6 0000-0003-0874-9043 primary 'Gallagher-Jones, M.' 7 ? primary 'Borges, R.J.' 8 ? primary 'Uson, I.' 9 ? primary 'Rodriguez, J.A.' 10 0000-0002-0248-4964 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'prion New1p' 814.800 1 ? ? 'repeat segment' ? 2 water nat water 18.015 3 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code NYNNYQ _entity_poly.pdbx_seq_one_letter_code_can NYNNYQ _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ASN n 1 2 TYR n 1 3 ASN n 1 4 ASN n 1 5 TYR n 1 6 GLN n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 6 _pdbx_entity_src_syn.organism_scientific 'Saccharomyces cerevisiae' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 4932 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 HOH non-polymer . WATER ? 'H2 O' 18.015 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ASN 1 1 1 ASN ASN A . n A 1 2 TYR 2 2 2 TYR TYR A . n A 1 3 ASN 3 3 3 ASN ASN A . n A 1 4 ASN 4 4 4 ASN ASN A . n A 1 5 TYR 5 5 5 TYR TYR A . n A 1 6 GLN 6 6 6 GLN GLN A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 101 1 HOH HOH A . B 2 HOH 2 102 3 HOH HOH A . B 2 HOH 3 103 2 HOH HOH A . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data reduction' ? ? 'Wolfgang Kabsch' Wolfgang.Kabsch@mpimf-heidelberg.mpg.de ? ? ? ? ? http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/ ? XDS ? ? package . 1 ? 'data scaling' ? ? 'Wolfgang Kabsch' ? ? ? ? ? ? http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html ? XSCALE ? ? package . 2 ? refinement ? ? 'Paul D. Adams' PDAdams@lbl.gov ? ? ? ? C++ http://www.phenix-online.org/ ? PHENIX ? ? package . 3 ? 'data extraction' ? ? PDB deposit@deposit.rcsb.org 'Oct. 31, 2020' ? ? ? C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ ? PDB_EXTRACT ? ? package 3.27 4 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 120.000 _cell.angle_gamma_esd ? _cell.entry_id 7N2K _cell.details ? _cell.formula_units_Z ? _cell.length_a 27.200 _cell.length_a_esd ? _cell.length_b 27.200 _cell.length_b_esd ? _cell.length_c 4.830 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 3 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7N2K _symmetry.cell_setting ? _symmetry.Int_Tables_number 144 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7N2K _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON CRYSTALLOGRAPHY' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _diffrn.ambient_environment ? _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l ? _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type electron # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _reflns.B_iso_Wilson_estimate 11.193 _reflns.entry_id 7N2K _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.100 _reflns.d_resolution_low 13.600 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 1357 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 83.400 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 5.817 _reflns.pdbx_Rmerge_I_obs 0.211 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 4.920 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 0.869 _reflns.pdbx_scaling_rejects 2 _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.226 _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all 7893 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.985 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_CC_star _reflns_shell.pdbx_R_split _reflns_shell.pdbx_percent_possible_ellipsoidal _reflns_shell.pdbx_percent_possible_spherical _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous _reflns_shell.pdbx_percent_possible_spherical_anomalous _reflns_shell.pdbx_redundancy_anomalous _reflns_shell.pdbx_CC_half_anomalous _reflns_shell.pdbx_absDiff_over_sigma_anomalous _reflns_shell.pdbx_percent_possible_anomalous 1.100 1.190 ? 1.210 ? 431 359 ? 191 53.200 ? ? ? ? 0.483 ? ? ? ? ? ? ? ? 2.257 ? ? ? ? 0.601 ? ? 1 1 0.604 ? ? ? ? ? ? ? ? ? ? 1.190 1.310 ? 2.280 ? 692 309 ? 223 72.200 ? ? ? ? 0.313 ? ? ? ? ? ? ? ? 3.103 ? ? ? ? 0.371 ? ? 2 1 0.913 ? ? ? ? ? ? ? ? ? ? 1.310 1.500 ? 3.530 ? 1691 317 ? 302 95.300 ? ? ? ? 0.351 ? ? ? ? ? ? ? ? 5.599 ? ? ? ? 0.385 ? ? 3 1 0.848 ? ? ? ? ? ? ? ? ? ? 1.500 1.880 ? 6.240 ? 2433 306 ? 306 100.000 ? ? ? ? 0.266 ? ? ? ? ? ? ? ? 7.951 ? ? ? ? 0.284 ? ? 4 1 0.962 ? ? ? ? ? ? ? ? ? ? 1.880 13.600 ? 8.860 ? 2646 337 ? 335 99.400 ? ? ? ? 0.192 ? ? ? ? ? ? ? ? 7.899 ? ? ? ? 0.204 ? ? 5 1 0.982 ? ? ? ? ? ? ? ? ? ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max 18.070 _refine.B_iso_mean 7.2134 _refine.B_iso_min 2.490 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 7N2K _refine.pdbx_refine_id 'ELECTRON CRYSTALLOGRAPHY' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.3010 _refine.ls_d_res_low 13.6000 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 969 _refine.ls_number_reflns_R_free 97 _refine.ls_number_reflns_R_work 872 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 97.8800 _refine.ls_percent_reflns_R_free 10.0100 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1643 _refine.ls_R_factor_R_free 0.1854 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1614 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.230 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct ? _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 20.8300 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.1400 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'ELECTRON CRYSTALLOGRAPHY' _refine_hist.cycle_id final _refine_hist.details ? _refine_hist.d_res_high 1.3010 _refine_hist.d_res_low 13.6000 _refine_hist.number_atoms_solvent 3 _refine_hist.number_atoms_total 61 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total 6 _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent 14.99 _refine_hist.pdbx_number_atoms_protein 58 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'ELECTRON CRYSTALLOGRAPHY' 1.3011 1.3475 . . 8 79 88.0000 . . . 0.3074 0.0000 0.2274 . . . . . . . . . . . 'ELECTRON CRYSTALLOGRAPHY' 1.3475 1.4014 . . 10 84 92.0000 . . . 0.2343 0.0000 0.2561 . . . . . . . . . . . 'ELECTRON CRYSTALLOGRAPHY' 1.4014 1.4652 . . 10 90 100.0000 . . . 0.2141 0.0000 0.2742 . . . . . . . . . . . 'ELECTRON CRYSTALLOGRAPHY' 1.4652 1.5423 . . 10 96 100.0000 . . . 0.2370 0.0000 0.1766 . . . . . . . . . . . 'ELECTRON CRYSTALLOGRAPHY' 1.5423 1.6388 . . 11 93 100.0000 . . . 0.1744 0.0000 0.1965 . . . . . . . . . . . 'ELECTRON CRYSTALLOGRAPHY' 1.6388 1.7651 . . 8 78 100.0000 . . . 0.4104 0.0000 0.1554 . . . . . . . . . . . 'ELECTRON CRYSTALLOGRAPHY' 1.7651 1.9422 . . 10 87 100.0000 . . . 0.2253 0.0000 0.1338 . . . . . . . . . . . 'ELECTRON CRYSTALLOGRAPHY' 1.9422 2.2222 . . 10 93 100.0000 . . . 0.1815 0.0000 0.1499 . . . . . . . . . . . 'ELECTRON CRYSTALLOGRAPHY' 2.2222 2.7958 . . 10 88 100.0000 . . . 0.1450 0.0000 0.1488 . . . . . . . . . . . 'ELECTRON CRYSTALLOGRAPHY' 2.7958 13.6000 . . 10 84 99.0000 . . . 0.1032 0.0000 0.1228 . . . . . . . . . . . # _struct.entry_id 7N2K _struct.title 'MicroED structure of sequence variant of repeat segment of the yeast prion New1p phased by ARCIMBOLDO-BORGES' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7N2K _struct_keywords.text 'amyloid, MicroED, prion, yeast, New1p, PROTEIN FIBRIL' _struct_keywords.pdbx_keywords 'PROTEIN FIBRIL' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 7N2K _struct_ref.pdbx_db_accession 7N2K _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 7N2K _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 6 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 7N2K _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 6 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 6 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 0 ? 1 MORE 0 ? 1 'SSA (A^2)' 1010 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _em_3d_fitting.entry_id 7N2K _em_3d_fitting.id 1 _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_protocol OTHER _em_3d_fitting.ref_space ? _em_3d_fitting.target_criteria ? _em_3d_fitting.method ? # _em_3d_reconstruction.entry_id 7N2K _em_3d_reconstruction.id 1 _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.details l _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.num_particles ? _em_3d_reconstruction.resolution ? _em_3d_reconstruction.resolution_method 'DIFFRACTION PATTERN/LAYERLINES' _em_3d_reconstruction.symmetry_type '3D CRYSTAL' _em_3d_reconstruction.method ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.magnification_calibration ? # _em_buffer.id 1 _em_buffer.details ? _em_buffer.pH 4.5 _em_buffer.specimen_id 1 _em_buffer.name ? # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.details ? _em_entity_assembly.name 'steric zipper structure of sequence variant of repeat segment of the yeast prion New1p' _em_entity_assembly.source 'MULTIPLE SOURCES' _em_entity_assembly.type COMPLEX _em_entity_assembly.entity_id_list 1 _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? # _em_imaging.id 1 _em_imaging.entry_id 7N2K _em_imaging.accelerating_voltage 200 _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.calibrated_defocus_max ? _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_magnification ? _em_imaging.cryogen ? _em_imaging.details ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.microscope_model 'FEI TALOS ARCTICA' _em_imaging.mode DIFFRACTION _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_max ? _em_imaging.nominal_defocus_min ? _em_imaging.nominal_magnification ? _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? _em_imaging.residual_tilt ? _em_imaging.specimen_holder_model ? _em_imaging.specimen_id 1 _em_imaging.citation_id ? _em_imaging.date ? _em_imaging.temperature ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.astigmatism ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? _em_imaging.specimen_holder_type ? # _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.chamber_temperature ? _em_vitrification.cryogen_name ETHANE _em_vitrification.details ? _em_vitrification.humidity ? _em_vitrification.instrument ? _em_vitrification.entry_id 7N2K _em_vitrification.citation_id ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 7N2K _em_experiment.id 1 _em_experiment.aggregation_state '3D ARRAY' _em_experiment.reconstruction_method CRYSTALLOGRAPHY _em_experiment.entity_assembly_id 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ASN N N N N 1 ASN CA C N S 2 ASN C C N N 3 ASN O O N N 4 ASN CB C N N 5 ASN CG C N N 6 ASN OD1 O N N 7 ASN ND2 N N N 8 ASN OXT O N N 9 ASN H H N N 10 ASN H2 H N N 11 ASN HA H N N 12 ASN HB2 H N N 13 ASN HB3 H N N 14 ASN HD21 H N N 15 ASN HD22 H N N 16 ASN HXT H N N 17 GLN N N N N 18 GLN CA C N S 19 GLN C C N N 20 GLN O O N N 21 GLN CB C N N 22 GLN CG C N N 23 GLN CD C N N 24 GLN OE1 O N N 25 GLN NE2 N N N 26 GLN OXT O N N 27 GLN H H N N 28 GLN H2 H N N 29 GLN HA H N N 30 GLN HB2 H N N 31 GLN HB3 H N N 32 GLN HG2 H N N 33 GLN HG3 H N N 34 GLN HE21 H N N 35 GLN HE22 H N N 36 GLN HXT H N N 37 HOH O O N N 38 HOH H1 H N N 39 HOH H2 H N N 40 TYR N N N N 41 TYR CA C N S 42 TYR C C N N 43 TYR O O N N 44 TYR CB C N N 45 TYR CG C Y N 46 TYR CD1 C Y N 47 TYR CD2 C Y N 48 TYR CE1 C Y N 49 TYR CE2 C Y N 50 TYR CZ C Y N 51 TYR OH O N N 52 TYR OXT O N N 53 TYR H H N N 54 TYR H2 H N N 55 TYR HA H N N 56 TYR HB2 H N N 57 TYR HB3 H N N 58 TYR HD1 H N N 59 TYR HD2 H N N 60 TYR HE1 H N N 61 TYR HE2 H N N 62 TYR HH H N N 63 TYR HXT H N N 64 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ASN N CA sing N N 1 ASN N H sing N N 2 ASN N H2 sing N N 3 ASN CA C sing N N 4 ASN CA CB sing N N 5 ASN CA HA sing N N 6 ASN C O doub N N 7 ASN C OXT sing N N 8 ASN CB CG sing N N 9 ASN CB HB2 sing N N 10 ASN CB HB3 sing N N 11 ASN CG OD1 doub N N 12 ASN CG ND2 sing N N 13 ASN ND2 HD21 sing N N 14 ASN ND2 HD22 sing N N 15 ASN OXT HXT sing N N 16 GLN N CA sing N N 17 GLN N H sing N N 18 GLN N H2 sing N N 19 GLN CA C sing N N 20 GLN CA CB sing N N 21 GLN CA HA sing N N 22 GLN C O doub N N 23 GLN C OXT sing N N 24 GLN CB CG sing N N 25 GLN CB HB2 sing N N 26 GLN CB HB3 sing N N 27 GLN CG CD sing N N 28 GLN CG HG2 sing N N 29 GLN CG HG3 sing N N 30 GLN CD OE1 doub N N 31 GLN CD NE2 sing N N 32 GLN NE2 HE21 sing N N 33 GLN NE2 HE22 sing N N 34 GLN OXT HXT sing N N 35 HOH O H1 sing N N 36 HOH O H2 sing N N 37 TYR N CA sing N N 38 TYR N H sing N N 39 TYR N H2 sing N N 40 TYR CA C sing N N 41 TYR CA CB sing N N 42 TYR CA HA sing N N 43 TYR C O doub N N 44 TYR C OXT sing N N 45 TYR CB CG sing N N 46 TYR CB HB2 sing N N 47 TYR CB HB3 sing N N 48 TYR CG CD1 doub Y N 49 TYR CG CD2 sing Y N 50 TYR CD1 CE1 sing Y N 51 TYR CD1 HD1 sing N N 52 TYR CD2 CE2 doub Y N 53 TYR CD2 HD2 sing N N 54 TYR CE1 CZ doub Y N 55 TYR CE1 HE1 sing N N 56 TYR CE2 CZ sing Y N 57 TYR CE2 HE2 sing N N 58 TYR CZ OH sing N N 59 TYR OH HH sing N N 60 TYR OXT HXT sing N N 61 # _em_3d_crystal_entity.id 1 _em_3d_crystal_entity.image_processing_id 1 _em_3d_crystal_entity.angle_alpha 90 _em_3d_crystal_entity.angle_beta 90 _em_3d_crystal_entity.angle_gamma 120 _em_3d_crystal_entity.length_a 27.2 _em_3d_crystal_entity.length_b 27.2 _em_3d_crystal_entity.length_c 4.83 _em_3d_crystal_entity.space_group_name P31 _em_3d_crystal_entity.space_group_num 144 # _em_ctf_correction.id 1 _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.type NONE _em_ctf_correction.details ? # _em_diffraction.id 1 _em_diffraction.camera_length 1000 _em_diffraction.imaging_id 1 _em_diffraction.tilt_angle_list ? # loop_ _em_diffraction_shell.id _em_diffraction_shell.em_diffraction_stats_id _em_diffraction_shell.fourier_space_coverage _em_diffraction_shell.high_resolution _em_diffraction_shell.low_resolution _em_diffraction_shell.multiplicity _em_diffraction_shell.num_structure_factors _em_diffraction_shell.phase_residual 1 1 84 13.6007 2.7958 8.1 84 0.01 2 1 88 2.7958 2.2222 8.08 88 0.01 3 1 93 2.2222 1.9422 6.87 93 0.01 4 1 87 1.9422 1.7651 8.32 87 0.01 5 1 78 1.7651 1.6388 8.06 78 0.01 6 1 93 1.6388 1.5423 7.34 93 0.01 7 1 96 1.5423 1.4652 8.09 96 0.01 8 1 90 1.4652 1.4014 8.12 90 0.01 9 1 84 1.4014 1.3475 5.78 84 0.01 10 1 79 1.3475 1.3011 4.07 79 0.01 # _em_diffraction_stats.id 1 _em_diffraction_stats.details ;Phase error and phase residual statistics are not routinely reported for crystallographic structures. No imaging was used. The phases were obtained by an ab initio crystallographic method described in our manuscript ; _em_diffraction_stats.image_processing_id 1 _em_diffraction_stats.fourier_space_coverage 83.4 _em_diffraction_stats.high_resolution 1.1 _em_diffraction_stats.num_intensities_measured 7893 _em_diffraction_stats.num_structure_factors 1357 _em_diffraction_stats.overall_phase_error 20.8 _em_diffraction_stats.overall_phase_residual 0.01 _em_diffraction_stats.phase_error_rejection_criteria 0 _em_diffraction_stats.r_merge 21.1 _em_diffraction_stats.r_sym 21.1 # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.avg_electron_dose_per_image 0.05 _em_image_recording.average_exposure_time ? _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'TVIPS TEMCAM-F416 (4k x 4k)' _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.id _em_software.category _em_software.details _em_software.name _em_software.version _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id 1 'IMAGE ACQUISITION' ? ? ? ? ? 1 2 MASKING ? ? ? ? ? ? 3 'CTF CORRECTION' ? ? ? 1 ? ? 4 'LAYERLINE INDEXING' ? ? ? ? ? ? 5 'DIFFRACTION INDEXING' ? ? ? ? ? ? 6 'MODEL FITTING' ? ? ? ? 1 ? 7 OTHER ? ? ? ? ? ? 8 'MODEL REFINEMENT' ? ? ? ? 1 ? 9 'MOLECULAR REPLACEMENT' ? ? ? 1 ? ? 10 'LATTICE DISTORTION CORRECTION' ? ? ? 1 ? ? 11 'SYMMETRY DETERMINATION' ? ? ? 1 ? ? 12 'CRYSTALLOGRAPHY MERGING' ? ? ? 1 ? ? 13 RECONSTRUCTION ? ? ? 1 ? ? # _em_specimen.id 1 _em_specimen.experiment_id 1 _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'National Science Foundation (NSF, United States)' 'United States' DMR-1548924 1 'Department of Energy (DOE, United States)' 'United States' DE-FC02-02ER63421 2 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' GM128867 3 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' P41GM136508 4 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' GM136614 5 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' GM007185 6 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' AI143368 7 'Sao Paulo Research Foundation (FAPESP)' 'United States' 16/24191-8 8 'Sao Paulo Research Foundation (FAPESP)' Brazil 17/13485-3 9 'Spanish Ministry of Science, Innovation, and Universities' 'United States' BES-2015-071397 10 'Spanish Ministry of Economy and Competitiveness' Spain PGC2018-101370-B-100, 11 'Spanish Ministry of Economy and Competitiveness' Spain MDM2014-0435-01 12 'Other government' Spain '2017SGR- 1192' 13 # _atom_sites.entry_id 7N2K _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.036765 _atom_sites.fract_transf_matrix[1][2] 0.021226 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.042452 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.207039 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_alt_id _atom_site.label_comp_id _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.label_seq_id _atom_site.pdbx_PDB_ins_code _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_seq_id _atom_site.auth_comp_id _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.pdbx_PDB_model_num ATOM 1 N N . ASN A 1 1 ? 22.369 5.744 1.094 1.00 7.07 ? 1 ASN A N 1 ATOM 2 C CA . ASN A 1 1 ? 21.081 5.597 0.427 1.00 4.81 ? 1 ASN A CA 1 ATOM 3 C C . ASN A 1 1 ? 19.985 6.337 1.176 1.00 4.87 ? 1 ASN A C 1 ATOM 4 O O . ASN A 1 1 ? 19.911 6.283 2.404 1.00 4.58 ? 1 ASN A O 1 ATOM 5 C CB . ASN A 1 1 ? 20.705 4.120 0.277 1.00 6.92 ? 1 ASN A CB 1 ATOM 6 C CG . ASN A 1 1 ? 21.608 3.376 -0.712 1.00 8.52 ? 1 ASN A CG 1 ATOM 7 O OD1 . ASN A 1 1 ? 22.486 3.968 -1.343 1.00 10.10 ? 1 ASN A OD1 1 ATOM 8 N ND2 . ASN A 1 1 ? 21.385 2.081 -0.848 1.00 8.89 ? 1 ASN A ND2 1 ATOM 9 N N . TYR A 1 2 ? 19.133 7.037 0.431 1.00 3.79 ? 2 TYR A N 1 ATOM 10 C CA . TYR A 1 2 ? 18.017 7.774 1.017 1.00 3.44 ? 2 TYR A CA 1 ATOM 11 C C . TYR A 1 2 ? 18.476 8.796 2.049 1.00 3.55 ? 2 TYR A C 1 ATOM 12 O O . TYR A 1 2 ? 17.754 9.081 2.990 1.00 4.02 ? 2 TYR A O 1 ATOM 13 C CB . TYR A 1 2 ? 16.946 6.847 1.599 1.00 3.13 ? 2 TYR A CB 1 ATOM 14 C CG . TYR A 1 2 ? 16.408 5.869 0.583 1.00 3.49 ? 2 TYR A CG 1 ATOM 15 C CD1 . TYR A 1 2 ? 15.254 6.155 -0.161 1.00 3.72 ? 2 TYR A CD1 1 ATOM 16 C CD2 . TYR A 1 2 ? 17.051 4.653 0.355 1.00 2.94 ? 2 TYR A CD2 1 ATOM 17 C CE1 . TYR A 1 2 ? 14.753 5.251 -1.108 1.00 2.49 ? 2 TYR A CE1 1 ATOM 18 C CE2 . TYR A 1 2 ? 16.556 3.739 -0.586 1.00 3.92 ? 2 TYR A CE2 1 ATOM 19 C CZ . TYR A 1 2 ? 15.404 4.043 -1.309 1.00 3.93 ? 2 TYR A CZ 1 ATOM 20 O OH . TYR A 1 2 ? 14.931 3.146 -2.242 1.00 4.12 ? 2 TYR A OH 1 ATOM 21 N N . ASN A 1 3 ? 19.679 9.349 1.874 1.00 4.04 ? 3 ASN A N 1 ATOM 22 C CA . ASN A 1 3 ? 20.187 10.413 2.731 1.00 5.20 ? 3 ASN A CA 1 ATOM 23 C C . ASN A 1 3 ? 19.833 11.778 2.150 1.00 4.91 ? 3 ASN A C 1 ATOM 24 O O . ASN A 1 3 ? 19.819 11.967 0.928 1.00 5.39 ? 3 ASN A O 1 ATOM 25 C CB . ASN A 1 3 ? 21.713 10.320 2.865 1.00 4.09 ? 3 ASN A CB 1 ATOM 26 C CG . ASN A 1 3 ? 22.161 9.053 3.561 1.00 3.50 ? 3 ASN A CG 1 ATOM 27 O OD1 . ASN A 1 3 ? 21.661 8.715 4.624 1.00 4.17 ? 3 ASN A OD1 1 ATOM 28 N ND2 . ASN A 1 3 ? 23.110 8.348 2.964 1.00 5.61 ? 3 ASN A ND2 1 ATOM 29 N N . ASN A 1 4 ? 19.582 12.742 3.038 1.00 4.54 ? 4 ASN A N 1 ATOM 30 C CA . ASN A 1 4 ? 19.134 14.077 2.660 1.00 4.93 ? 4 ASN A CA 1 ATOM 31 C C . ASN A 1 4 ? 20.145 15.116 3.117 1.00 4.47 ? 4 ASN A C 1 ATOM 32 O O . ASN A 1 4 ? 20.473 15.179 4.303 1.00 6.47 ? 4 ASN A O 1 ATOM 33 C CB . ASN A 1 4 ? 17.784 14.384 3.308 1.00 5.35 ? 4 ASN A CB 1 ATOM 34 C CG . ASN A 1 4 ? 17.239 15.717 2.880 1.00 4.66 ? 4 ASN A CG 1 ATOM 35 O OD1 . ASN A 1 4 ? 17.170 16.663 3.662 1.00 7.36 ? 4 ASN A OD1 1 ATOM 36 N ND2 . ASN A 1 4 ? 16.865 15.810 1.619 1.00 7.63 ? 4 ASN A ND2 1 ATOM 37 N N . TYR A 1 5 ? 20.624 15.940 2.183 1.00 6.40 ? 5 TYR A N 1 ATOM 38 C CA . TYR A 1 5 ? 21.538 17.037 2.489 1.00 6.80 ? 5 TYR A CA 1 ATOM 39 C C . TYR A 1 5 ? 20.920 18.310 1.936 1.00 6.81 ? 5 TYR A C 1 ATOM 40 O O . TYR A 1 5 ? 20.729 18.434 0.725 1.00 9.22 ? 5 TYR A O 1 ATOM 41 C CB . TYR A 1 5 ? 22.919 16.804 1.861 1.00 8.60 ? 5 TYR A CB 1 ATOM 42 C CG . TYR A 1 5 ? 23.506 15.430 2.138 1.00 8.64 ? 5 TYR A CG 1 ATOM 43 C CD1 . TYR A 1 5 ? 24.432 15.241 3.165 1.00 11.81 ? 5 TYR A CD1 1 ATOM 44 C CD2 . TYR A 1 5 ? 23.132 14.320 1.381 1.00 8.81 ? 5 TYR A CD2 1 ATOM 45 C CE1 . TYR A 1 5 ? 24.969 13.985 3.431 1.00 9.93 ? 5 TYR A CE1 1 ATOM 46 C CE2 . TYR A 1 5 ? 23.667 13.058 1.634 1.00 7.85 ? 5 TYR A CE2 1 ATOM 47 C CZ . TYR A 1 5 ? 24.586 12.900 2.657 1.00 9.06 ? 5 TYR A CZ 1 ATOM 48 O OH . TYR A 1 5 ? 25.114 11.649 2.919 1.00 11.26 ? 5 TYR A OH 1 ATOM 49 N N . GLN A 1 6 ? 20.579 19.240 2.815 1.00 8.95 ? 6 GLN A N 1 ATOM 50 C CA . GLN A 1 6 ? 19.903 20.443 2.364 1.00 9.37 ? 6 GLN A CA 1 ATOM 51 C C . GLN A 1 6 ? 20.391 21.670 3.111 1.00 10.61 ? 6 GLN A C 1 ATOM 52 O O . GLN A 1 6 ? 20.040 22.795 2.751 1.00 10.30 ? 6 GLN A O 1 ATOM 53 C CB . GLN A 1 6 ? 18.401 20.291 2.559 1.00 10.35 ? 6 GLN A CB 1 ATOM 54 C CG . GLN A 1 6 ? 18.006 20.244 4.007 1.00 11.31 ? 6 GLN A CG 1 ATOM 55 C CD . GLN A 1 6 ? 16.502 20.307 4.219 1.00 12.98 ? 6 GLN A CD 1 ATOM 56 O OE1 . GLN A 1 6 ? 16.001 21.164 4.947 1.00 14.24 ? 6 GLN A OE1 1 ATOM 57 N NE2 . GLN A 1 6 ? 15.779 19.394 3.589 1.00 11.39 ? 6 GLN A NE2 1 ATOM 58 O OXT . GLN A 1 6 ? 21.133 21.570 4.086 1.00 9.75 ? 6 GLN A OXT 1 HETATM 59 O O . HOH B 2 . ? 25.112 10.153 1.079 1.00 10.99 ? 101 HOH A O 1 HETATM 60 O O . HOH B 2 . ? 17.806 23.166 1.286 1.00 15.90 ? 102 HOH A O 1 HETATM 61 O O . HOH B 2 . ? 13.103 21.040 5.211 1.00 18.07 ? 103 HOH A O 1 #