data_8ANM # _entry.id 8ANM # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.394 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8ANM pdb_00008anm 10.2210/pdb8anm/pdb WWPDB D_1292124741 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2023-08-02 2 'Structure model' 1 1 2023-08-09 3 'Structure model' 1 2 2024-06-19 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' chem_comp_atom 4 3 'Structure model' chem_comp_bond # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_CSD' 4 2 'Structure model' '_citation.journal_id_ISSN' 5 2 'Structure model' '_citation.journal_volume' 6 2 'Structure model' '_citation.page_first' 7 2 'Structure model' '_citation.page_last' 8 2 'Structure model' '_citation.pdbx_database_id_DOI' 9 2 'Structure model' '_citation.pdbx_database_id_PubMed' 10 2 'Structure model' '_citation.title' 11 2 'Structure model' '_citation.year' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8ANM _pdbx_database_status.recvd_initial_deposition_date 2022-08-05 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_contact_author.id 2 _pdbx_contact_author.email perczel.andras@ttk.elte.hu _pdbx_contact_author.name_first Andras _pdbx_contact_author.name_last Perczel _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0003-1252-6416 # _audit_author.name 'Durvanger, Z.' _audit_author.pdbx_ordinal 1 _audit_author.identifier_ORCID 0000-0002-2652-4916 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nat Commun' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2041-1723 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 14 _citation.language ? _citation.page_first 4621 _citation.page_last 4621 _citation.title 'Polymorphic amyloid nanostructures of hormone peptides involved in glucose homeostasis display reversible amyloid formation.' _citation.year 2023 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s41467-023-40294-x _citation.pdbx_database_id_PubMed 37528104 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Horvath, D.' 1 0000-0001-8239-3933 primary 'Durvanger, Z.' 2 0000-0002-2652-4916 primary 'K Menyhard, D.' 3 0000-0002-0095-5531 primary 'Sulyok-Eiler, M.' 4 ? primary 'Bencs, F.' 5 0009-0003-9246-2228 primary 'Gyulai, G.' 6 0000-0002-1352-2014 primary 'Horvath, P.' 7 0000-0001-7149-4173 primary 'Taricska, N.' 8 ? primary 'Perczel, A.' 9 0000-0003-1252-6416 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'Peptide LYIQWL from Tc5b' 835.001 1 ? ? ? ? 2 water nat water 18.015 5 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code LYIQWL _entity_poly.pdbx_seq_one_letter_code_can LYIQWL _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 LEU n 1 2 TYR n 1 3 ILE n 1 4 GLN n 1 5 TRP n 1 6 LEU n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 6 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 LEU 1 1 1 LEU LEU A . n A 1 2 TYR 2 2 2 TYR TYR A . n A 1 3 ILE 3 3 3 ILE ILE A . n A 1 4 GLN 4 4 4 GLN GLN A . n A 1 5 TRP 5 5 5 TRP TRP A . n A 1 6 LEU 6 6 6 LEU LEU A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 101 5 HOH HOH A . B 2 HOH 2 102 2 HOH HOH A . B 2 HOH 3 103 1 HOH HOH A . B 2 HOH 4 104 3 HOH HOH A . B 2 HOH 5 105 4 HOH HOH A . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.20.1_4487 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? CrysalisPro ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? CrysalisPro ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? Fragon ? ? ? . 4 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 8ANM _cell.details ? _cell.formula_units_Z ? _cell.length_a 9.492 _cell.length_a_esd ? _cell.length_b 21.675 _cell.length_b_esd ? _cell.length_c 23.686 _cell.length_c_esd ? _cell.volume 4873.136 _cell.volume_esd ? _cell.Z_PDB 4 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8ANM _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8ANM _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 1.46 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 15.70 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'EVAPORATION, RECRYSTALLIZATION' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 310 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;Peptide was dissolved in water in 0.15 mg/ml concentration followed by pH adjustment with NaOH to pH 4.0 - 6.0. Crystals grew after incubation at 310K. ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'RIGAKU HyPix-6000HE' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2021-10-14 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.54184 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source 'ROTATING ANODE' _diffrn_source.target ? _diffrn_source.type 'RIGAKU PhotonJet-R' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.54184 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_synchrotron_site ? # _reflns.B_iso_Wilson_estimate 5.24 _reflns.entry_id 8ANM _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 0.90 _reflns.d_resolution_low 15.99 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 3952 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.92 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 5.57 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 9.1 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.128 _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.999 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? _reflns.pdbx_CC_split_method ? # _reflns_shell.d_res_high 0.90 _reflns_shell.d_res_low 0.93 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 2.3 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 392 _reflns_shell.percent_possible_all ? _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all 0.672 _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.761 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 5.11 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 8ANM _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 0.90 _refine.ls_d_res_low 15.99 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 3936 _refine.ls_number_reflns_R_free 393 _refine.ls_number_reflns_R_work 3543 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.52 _refine.ls_percent_reflns_R_free 9.98 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1314 _refine.ls_R_factor_R_free 0.1451 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1299 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.35 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 'ideal 5 residue beta strand form the software Fragon' _refine.pdbx_stereochemistry_target_values 'GeoStd + Monomer Library + CDL v1.2' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 16.0870 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.0434 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 0.90 _refine_hist.d_res_low 15.99 _refine_hist.number_atoms_solvent 5 _refine_hist.number_atoms_total 65 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 60 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.0090 ? 72 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.1546 ? 100 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.1104 ? 10 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.0055 ? 12 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 7.7450 ? 9 ? f_dihedral_angle_d ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 0.90 1.03 . . 128 1153 99.53 . . . 0.2329 . 0.2239 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.03 1.30 . . 128 1150 99.38 . . . 0.1310 . 0.1514 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.30 15.99 . . 137 1240 99.71 . . . 0.1267 . 0.0982 . . . . . . . . . . . # _struct.entry_id 8ANM _struct.title 'Structure of the amyloid-forming peptide LYIQWL from Tc5b, grown from water' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8ANM _struct_keywords.text 'amyloid, PROTEIN FIBRIL' _struct_keywords.pdbx_keywords 'PROTEIN FIBRIL' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 8ANM _struct_ref.pdbx_db_accession 8ANM _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 8ANM _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 6 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 8ANM _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 6 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 6 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 0 ? 1 MORE 0 ? 1 'SSA (A^2)' 1050 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details 'ECD measurements confirmed amyloid formation' # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _space_group_symop.id _space_group_symop.operation_xyz 1 x,y,z 2 x+1/2,-y+1/2,-z 3 -x,y+1/2,-z+1/2 4 -x+1/2,-y,z+1/2 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal GLN N N N N 1 GLN CA C N S 2 GLN C C N N 3 GLN O O N N 4 GLN CB C N N 5 GLN CG C N N 6 GLN CD C N N 7 GLN OE1 O N N 8 GLN NE2 N N N 9 GLN OXT O N N 10 GLN H H N N 11 GLN H2 H N N 12 GLN HA H N N 13 GLN HB2 H N N 14 GLN HB3 H N N 15 GLN HG2 H N N 16 GLN HG3 H N N 17 GLN HE21 H N N 18 GLN HE22 H N N 19 GLN HXT H N N 20 HOH O O N N 21 HOH H1 H N N 22 HOH H2 H N N 23 ILE N N N N 24 ILE CA C N S 25 ILE C C N N 26 ILE O O N N 27 ILE CB C N S 28 ILE CG1 C N N 29 ILE CG2 C N N 30 ILE CD1 C N N 31 ILE OXT O N N 32 ILE H H N N 33 ILE H2 H N N 34 ILE HA H N N 35 ILE HB H N N 36 ILE HG12 H N N 37 ILE HG13 H N N 38 ILE HG21 H N N 39 ILE HG22 H N N 40 ILE HG23 H N N 41 ILE HD11 H N N 42 ILE HD12 H N N 43 ILE HD13 H N N 44 ILE HXT H N N 45 LEU N N N N 46 LEU CA C N S 47 LEU C C N N 48 LEU O O N N 49 LEU CB C N N 50 LEU CG C N N 51 LEU CD1 C N N 52 LEU CD2 C N N 53 LEU OXT O N N 54 LEU H H N N 55 LEU H2 H N N 56 LEU HA H N N 57 LEU HB2 H N N 58 LEU HB3 H N N 59 LEU HG H N N 60 LEU HD11 H N N 61 LEU HD12 H N N 62 LEU HD13 H N N 63 LEU HD21 H N N 64 LEU HD22 H N N 65 LEU HD23 H N N 66 LEU HXT H N N 67 TRP N N N N 68 TRP CA C N S 69 TRP C C N N 70 TRP O O N N 71 TRP CB C N N 72 TRP CG C Y N 73 TRP CD1 C Y N 74 TRP CD2 C Y N 75 TRP NE1 N Y N 76 TRP CE2 C Y N 77 TRP CE3 C Y N 78 TRP CZ2 C Y N 79 TRP CZ3 C Y N 80 TRP CH2 C Y N 81 TRP OXT O N N 82 TRP H H N N 83 TRP H2 H N N 84 TRP HA H N N 85 TRP HB2 H N N 86 TRP HB3 H N N 87 TRP HD1 H N N 88 TRP HE1 H N N 89 TRP HE3 H N N 90 TRP HZ2 H N N 91 TRP HZ3 H N N 92 TRP HH2 H N N 93 TRP HXT H N N 94 TYR N N N N 95 TYR CA C N S 96 TYR C C N N 97 TYR O O N N 98 TYR CB C N N 99 TYR CG C Y N 100 TYR CD1 C Y N 101 TYR CD2 C Y N 102 TYR CE1 C Y N 103 TYR CE2 C Y N 104 TYR CZ C Y N 105 TYR OH O N N 106 TYR OXT O N N 107 TYR H H N N 108 TYR H2 H N N 109 TYR HA H N N 110 TYR HB2 H N N 111 TYR HB3 H N N 112 TYR HD1 H N N 113 TYR HD2 H N N 114 TYR HE1 H N N 115 TYR HE2 H N N 116 TYR HH H N N 117 TYR HXT H N N 118 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal GLN N CA sing N N 1 GLN N H sing N N 2 GLN N H2 sing N N 3 GLN CA C sing N N 4 GLN CA CB sing N N 5 GLN CA HA sing N N 6 GLN C O doub N N 7 GLN C OXT sing N N 8 GLN CB CG sing N N 9 GLN CB HB2 sing N N 10 GLN CB HB3 sing N N 11 GLN CG CD sing N N 12 GLN CG HG2 sing N N 13 GLN CG HG3 sing N N 14 GLN CD OE1 doub N N 15 GLN CD NE2 sing N N 16 GLN NE2 HE21 sing N N 17 GLN NE2 HE22 sing N N 18 GLN OXT HXT sing N N 19 HOH O H1 sing N N 20 HOH O H2 sing N N 21 ILE N CA sing N N 22 ILE N H sing N N 23 ILE N H2 sing N N 24 ILE CA C sing N N 25 ILE CA CB sing N N 26 ILE CA HA sing N N 27 ILE C O doub N N 28 ILE C OXT sing N N 29 ILE CB CG1 sing N N 30 ILE CB CG2 sing N N 31 ILE CB HB sing N N 32 ILE CG1 CD1 sing N N 33 ILE CG1 HG12 sing N N 34 ILE CG1 HG13 sing N N 35 ILE CG2 HG21 sing N N 36 ILE CG2 HG22 sing N N 37 ILE CG2 HG23 sing N N 38 ILE CD1 HD11 sing N N 39 ILE CD1 HD12 sing N N 40 ILE CD1 HD13 sing N N 41 ILE OXT HXT sing N N 42 LEU N CA sing N N 43 LEU N H sing N N 44 LEU N H2 sing N N 45 LEU CA C sing N N 46 LEU CA CB sing N N 47 LEU CA HA sing N N 48 LEU C O doub N N 49 LEU C OXT sing N N 50 LEU CB CG sing N N 51 LEU CB HB2 sing N N 52 LEU CB HB3 sing N N 53 LEU CG CD1 sing N N 54 LEU CG CD2 sing N N 55 LEU CG HG sing N N 56 LEU CD1 HD11 sing N N 57 LEU CD1 HD12 sing N N 58 LEU CD1 HD13 sing N N 59 LEU CD2 HD21 sing N N 60 LEU CD2 HD22 sing N N 61 LEU CD2 HD23 sing N N 62 LEU OXT HXT sing N N 63 TRP N CA sing N N 64 TRP N H sing N N 65 TRP N H2 sing N N 66 TRP CA C sing N N 67 TRP CA CB sing N N 68 TRP CA HA sing N N 69 TRP C O doub N N 70 TRP C OXT sing N N 71 TRP CB CG sing N N 72 TRP CB HB2 sing N N 73 TRP CB HB3 sing N N 74 TRP CG CD1 doub Y N 75 TRP CG CD2 sing Y N 76 TRP CD1 NE1 sing Y N 77 TRP CD1 HD1 sing N N 78 TRP CD2 CE2 doub Y N 79 TRP CD2 CE3 sing Y N 80 TRP NE1 CE2 sing Y N 81 TRP NE1 HE1 sing N N 82 TRP CE2 CZ2 sing Y N 83 TRP CE3 CZ3 doub Y N 84 TRP CE3 HE3 sing N N 85 TRP CZ2 CH2 doub Y N 86 TRP CZ2 HZ2 sing N N 87 TRP CZ3 CH2 sing Y N 88 TRP CZ3 HZ3 sing N N 89 TRP CH2 HH2 sing N N 90 TRP OXT HXT sing N N 91 TYR N CA sing N N 92 TYR N H sing N N 93 TYR N H2 sing N N 94 TYR CA C sing N N 95 TYR CA CB sing N N 96 TYR CA HA sing N N 97 TYR C O doub N N 98 TYR C OXT sing N N 99 TYR CB CG sing N N 100 TYR CB HB2 sing N N 101 TYR CB HB3 sing N N 102 TYR CG CD1 doub Y N 103 TYR CG CD2 sing Y N 104 TYR CD1 CE1 sing Y N 105 TYR CD1 HD1 sing N N 106 TYR CD2 CE2 doub Y N 107 TYR CD2 HD2 sing N N 108 TYR CE1 CZ doub Y N 109 TYR CE1 HE1 sing N N 110 TYR CE2 CZ sing Y N 111 TYR CE2 HE2 sing N N 112 TYR CZ OH sing N N 113 TYR OH HH sing N N 114 TYR OXT HXT sing N N 115 # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Hungarian National Research, Development and Innovation Office' Hungary 2018-1.2.1-NKP-2018-00005 1 'European Regional Development Fund' 'European Union' 'VEKOP-2.3.2-16-2017-00014, VEKOP-2.3.3-15-2017-00018' 2 'Hungarian National Research, Development and Innovation Office' Hungary 'Thematic Excellence Program Synth+' 3 # _space_group.name_H-M_alt 'P 21 21 21' _space_group.name_Hall 'P 2ac 2ab' _space_group.IT_number 19 _space_group.crystal_system orthorhombic _space_group.id 1 # _atom_sites.entry_id 8ANM _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.105352 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.046136 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.042219 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.scat_dispersion_real _atom_type.scat_dispersion_imag _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c _atom_type.scat_source _atom_type.scat_dispersion_source C ? ? 2.51340 1.74867 1.72398 ? 31.80534 0.44561 10.58317 ? 0.0 ;3-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? H ? ? 0.53795 0.34799 0.11320 ? 10.08003 29.74760 2.57510 ? 0.0 ;3-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? N ? ? 2.99955 2.25584 1.72788 ? 23.27268 7.45433 0.31622 ? 0.0 ;3-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O ? ? 3.21184 3.04156 1.73156 ? 18.83700 5.90590 0.24126 ? 0.0 ;3-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_alt_id _atom_site.label_comp_id _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.label_seq_id _atom_site.pdbx_PDB_ins_code _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_seq_id _atom_site.auth_comp_id _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.pdbx_PDB_model_num ATOM 1 N N . LEU A 1 1 ? 0.22088 7.66468 -9.00363 1.000 5.18999 ? 1 LEU A N 1 ATOM 2 C CA . LEU A 1 1 ? 0.57508 7.91655 -7.57759 1.000 4.15162 ? 1 LEU A CA 1 ATOM 3 C C . LEU A 1 1 ? -0.00124 6.80529 -6.71786 1.000 3.01188 ? 1 LEU A C 1 ATOM 4 O O . LEU A 1 1 ? -1.16104 6.42306 -6.87123 1.000 3.67990 ? 1 LEU A O 1 ATOM 5 C CB . LEU A 1 1 ? 0.02158 9.26767 -7.15117 1.000 4.78903 ? 1 LEU A CB 1 ATOM 6 C CG . LEU A 1 1 ? 0.13895 9.62290 -5.65513 1.000 5.15653 ? 1 LEU A CG 1 ATOM 7 C CD1 . LEU A 1 1 ? 0.14826 11.10704 -5.46420 1.000 7.46727 ? 1 LEU A CD1 1 ATOM 8 C CD2 . LEU A 1 1 ? -0.98792 9.01139 -4.82110 1.000 5.57302 ? 1 LEU A CD2 1 ATOM 9 H H1 . LEU A 1 1 ? 0.73789 8.16738 -9.52675 1.000 6.73322 ? 1 LEU A H1 1 ATOM 10 H H2 . LEU A 1 1 ? 0.33845 6.80269 -9.20136 1.000 4.99409 ? 1 LEU A H2 1 ATOM 11 H H3 . LEU A 1 1 ? -0.63328 7.88446 -9.13079 1.000 5.77126 ? 1 LEU A H3 1 ATOM 12 H HA . LEU A 1 1 ? 1.53773 7.92689 -7.47041 1.000 4.96419 ? 1 LEU A HA 1 ATOM 13 H HB2 . LEU A 1 1 ? 0.49424 9.95016 -7.65263 1.000 5.11406 ? 1 LEU A HB2 1 ATOM 14 H HB3 . LEU A 1 1 ? -0.92173 9.29134 -7.38193 1.000 5.31194 ? 1 LEU A HB3 1 ATOM 15 H HG . LEU A 1 1 ? 0.98391 9.28492 -5.31220 1.000 5.07653 ? 1 LEU A HG 1 ATOM 16 H HD11 . LEU A 1 1 ? 0.22747 11.29888 -4.51625 1.000 5.83937 ? 1 LEU A HD11 1 ATOM 17 H HD12 . LEU A 1 1 ? 0.90433 11.48216 -5.94673 1.000 5.91741 ? 1 LEU A HD12 1 ATOM 18 H HD13 . LEU A 1 1 ? -0.68282 11.47076 -5.80870 1.000 5.79206 ? 1 LEU A HD13 1 ATOM 19 H HD21 . LEU A 1 1 ? -1.10085 9.52926 -4.00875 1.000 5.37594 ? 1 LEU A HD21 1 ATOM 20 H HD22 . LEU A 1 1 ? -1.80987 9.02824 -5.33824 1.000 5.01813 ? 1 LEU A HD22 1 ATOM 21 H HD23 . LEU A 1 1 ? -0.75952 8.09574 -4.59616 1.000 5.16669 ? 1 LEU A HD23 1 ATOM 22 N N . TYR A 1 2 ? 0.83104 6.31762 -5.79899 1.000 3.18900 ? 2 TYR A N 1 ATOM 23 C CA . TYR A 1 2 ? 0.38215 5.43308 -4.73455 1.000 3.06373 ? 2 TYR A CA 1 ATOM 24 C C . TYR A 1 2 ? 1.03671 5.89452 -3.44284 1.000 2.56437 ? 2 TYR A C 1 ATOM 25 O O . TYR A 1 2 ? 2.26038 6.07031 -3.39772 1.000 3.64234 ? 2 TYR A O 1 ATOM 26 C CB . TYR A 1 2 ? 0.77925 3.97081 -5.01340 1.000 4.17224 ? 2 TYR A CB 1 ATOM 27 C CG . TYR A 1 2 ? 0.39404 3.02307 -3.91096 1.000 3.72547 ? 2 TYR A CG 1 ATOM 28 C CD1 . TYR A 1 2 ? -0.94282 2.66757 -3.71396 1.000 4.99184 ? 2 TYR A CD1 1 ATOM 29 C CD2 . TYR A 1 2 ? 1.34589 2.50273 -3.04231 1.000 4.43427 ? 2 TYR A CD2 1 ATOM 30 C CE1 . TYR A 1 2 ? -1.30739 1.80877 -2.71443 1.000 4.99431 ? 2 TYR A CE1 1 ATOM 31 C CE2 . TYR A 1 2 ? 0.98213 1.61773 -2.03516 1.000 5.30289 ? 2 TYR A CE2 1 ATOM 32 C CZ . TYR A 1 2 ? -0.35159 1.28471 -1.87077 1.000 5.20373 ? 2 TYR A CZ 1 ATOM 33 O OH . TYR A 1 2 ? -0.76762 0.42801 -0.87504 1.000 6.38448 ? 2 TYR A OH 1 ATOM 34 H H . TYR A 1 2 ? 1.67468 6.48751 -5.77939 1.000 3.95680 ? 2 TYR A H 1 ATOM 35 H HA . TYR A 1 2 ? -0.58299 5.48836 -4.65490 1.000 3.45485 ? 2 TYR A HA 1 ATOM 36 H HB2 . TYR A 1 2 ? 0.35868 3.67850 -5.83735 1.000 4.76870 ? 2 TYR A HB2 1 ATOM 37 H HB3 . TYR A 1 2 ? 1.74058 3.92899 -5.10949 1.000 4.28352 ? 2 TYR A HB3 1 ATOM 38 H HD1 . TYR A 1 2 ? -1.59585 3.01253 -4.27759 1.000 4.84902 ? 2 TYR A HD1 1 ATOM 39 H HD2 . TYR A 1 2 ? 2.24165 2.72226 -3.15838 1.000 4.69316 ? 2 TYR A HD2 1 ATOM 40 H HE1 . TYR A 1 2 ? -2.20217 1.58187 -2.60277 1.000 5.04223 ? 2 TYR A HE1 1 ATOM 41 H HE2 . TYR A 1 2 ? 1.62804 1.27026 -1.46183 1.000 4.74085 ? 2 TYR A HE2 1 ATOM 42 H HH . TYR A 1 2 ? -0.09599 0.05274 -0.53757 1.000 4.98751 ? 2 TYR A HH 1 ATOM 43 N N . ILE A 1 3 ? 0.21695 6.07138 -2.41263 1.000 2.49355 ? 3 ILE A N 1 ATOM 44 C CA . ILE A 1 3 ? 0.67597 6.38748 -1.07164 1.000 3.03147 ? 3 ILE A CA 1 ATOM 45 C C . ILE A 1 3 ? 0.06161 5.38037 -0.11406 1.000 2.14563 ? 3 ILE A C 1 ATOM 46 O O . ILE A 1 3 ? -1.13738 5.07443 -0.19501 1.000 2.98716 ? 3 ILE A O 1 ATOM 47 C CB . ILE A 1 3 ? 0.25979 7.82271 -0.67480 1.000 4.09096 ? 3 ILE A CB 1 ATOM 48 C CG1 . ILE A 1 3 ? 1.13863 8.83880 -1.39285 1.000 6.16007 ? 3 ILE A CG1 1 ATOM 49 C CG2 . ILE A 1 3 ? 0.34651 8.02879 0.84774 1.000 5.95587 ? 3 ILE A CG2 1 ATOM 50 C CD1 . ILE A 1 3 ? 0.56878 10.24370 -1.36232 1.000 8.85883 ? 3 ILE A CD1 1 ATOM 51 H H . ILE A 1 3 ? -0.63695 6.00686 -2.47605 1.000 3.50384 ? 3 ILE A H 1 ATOM 52 H HA . ILE A 1 3 ? 1.63946 6.30865 -1.02475 1.000 3.60979 ? 3 ILE A HA 1 ATOM 53 H HB . ILE A 1 3 ? -0.66026 7.96796 -0.94817 1.000 4.03307 ? 3 ILE A HB 1 ATOM 54 H HG12 . ILE A 1 3 ? 2.01449 8.85214 -0.97827 1.000 4.61009 ? 3 ILE A HG12 1 ATOM 55 H HG13 . ILE A 1 3 ? 1.22438 8.57204 -2.31980 1.000 4.70733 ? 3 ILE A HG13 1 ATOM 56 H HG21 . ILE A 1 3 ? 0.29109 8.97828 1.03918 1.000 4.87491 ? 3 ILE A HG21 1 ATOM 57 H HG22 . ILE A 1 3 ? -0.38393 7.56451 1.28429 1.000 4.35574 ? 3 ILE A HG22 1 ATOM 58 H HG23 . ILE A 1 3 ? 1.19441 7.68338 1.17193 1.000 4.60937 ? 3 ILE A HG23 1 ATOM 59 H HD11 . ILE A 1 3 ? 1.11971 10.81061 -1.92633 1.000 6.44209 ? 3 ILE A HD11 1 ATOM 60 H HD12 . ILE A 1 3 ? -0.34457 10.22766 -1.68697 1.000 5.70447 ? 3 ILE A HD12 1 ATOM 61 H HD13 . ILE A 1 3 ? 0.58348 10.56902 -0.45028 1.000 6.53077 ? 3 ILE A HD13 1 ATOM 62 N N A GLN A 1 4 ? 0.89215 4.87431 0.79164 0.630 2.77988 ? 4 GLN A N 1 ATOM 63 N N B GLN A 1 4 ? 0.87105 4.91185 0.84127 0.370 2.80532 ? 4 GLN A N 1 ATOM 64 C CA A GLN A 1 4 ? 0.41635 4.08132 1.90335 0.630 2.87012 ? 4 GLN A CA 1 ATOM 65 C CA B GLN A 1 4 ? 0.43181 3.97015 1.86921 0.370 2.94790 ? 4 GLN A CA 1 ATOM 66 C C A GLN A 1 4 ? 1.04005 4.57703 3.19662 0.630 2.20606 ? 4 GLN A C 1 ATOM 67 C C B GLN A 1 4 ? 1.05298 4.37364 3.20104 0.370 2.79654 ? 4 GLN A C 1 ATOM 68 O O A GLN A 1 4 ? 2.23055 4.90115 3.26765 0.630 2.59038 ? 4 GLN A O 1 ATOM 69 O O B GLN A 1 4 ? 2.27920 4.45889 3.29945 0.370 2.36899 ? 4 GLN A O 1 ATOM 70 C CB A GLN A 1 4 ? 0.72735 2.60279 1.69449 0.630 4.07330 ? 4 GLN A CB 1 ATOM 71 C CB B GLN A 1 4 ? 0.85860 2.54225 1.50493 0.370 3.80963 ? 4 GLN A CB 1 ATOM 72 C CG A GLN A 1 4 ? 0.23353 1.71765 2.81692 0.630 4.40645 ? 4 GLN A CG 1 ATOM 73 C CG B GLN A 1 4 ? 0.46671 1.52091 2.55403 0.370 4.62452 ? 4 GLN A CG 1 ATOM 74 C CD A GLN A 1 4 ? 0.53357 0.26139 2.57225 0.630 6.85928 ? 4 GLN A CD 1 ATOM 75 C CD B GLN A 1 4 ? 0.81052 0.09482 2.17963 0.370 6.43867 ? 4 GLN A CD 1 ATOM 76 O OE1 A GLN A 1 4 ? 1.67389 -0.12034 2.27468 0.630 8.71982 ? 4 GLN A OE1 1 ATOM 77 O OE1 B GLN A 1 4 ? 1.04007 -0.22810 1.01963 0.370 6.78977 ? 4 GLN A OE1 1 ATOM 78 N NE2 A GLN A 1 4 ? -0.48820 -0.57012 2.69066 0.630 10.01820 ? 4 GLN A NE2 1 ATOM 79 N NE2 B GLN A 1 4 ? 0.84948 -0.76383 3.17901 0.370 8.78286 ? 4 GLN A NE2 1 ATOM 80 H H A GLN A 1 4 ? 1.74482 4.97623 0.77442 0.630 3.43255 ? 4 GLN A H 1 ATOM 81 H H B GLN A 1 4 ? 1.69828 5.13402 0.91438 0.370 3.43565 ? 4 GLN A H 1 ATOM 82 H HA A GLN A 1 4 ? -0.54511 4.18093 1.97829 0.630 3.53454 ? 4 GLN A HA 1 ATOM 83 H HA B GLN A 1 4 ? -0.53411 3.99783 1.95399 0.370 3.55590 ? 4 GLN A HA 1 ATOM 84 H HB2 A GLN A 1 4 ? 0.29934 2.31065 0.87526 0.630 4.24878 ? 4 GLN A HB2 1 ATOM 85 H HB2 B GLN A 1 4 ? 0.43474 2.29089 0.66948 0.370 4.22361 ? 4 GLN A HB2 1 ATOM 86 H HB3 A GLN A 1 4 ? 1.68636 2.48891 1.62387 0.630 4.29529 ? 4 GLN A HB3 1 ATOM 87 H HB3 B GLN A 1 4 ? 1.82158 2.51563 1.41022 0.370 4.32420 ? 4 GLN A HB3 1 ATOM 88 H HG2 A GLN A 1 4 ? 0.66530 1.97105 3.64568 0.630 4.83120 ? 4 GLN A HG2 1 ATOM 89 H HG2 B GLN A 1 4 ? 0.92865 1.71681 3.38087 0.370 4.82604 ? 4 GLN A HG2 1 ATOM 90 H HG3 A GLN A 1 4 ? -0.72644 1.82634 2.90045 0.630 4.80954 ? 4 GLN A HG3 1 ATOM 91 H HG3 B GLN A 1 4 ? -0.49216 1.57098 2.69143 0.370 4.81322 ? 4 GLN A HG3 1 ATOM 92 H HE21 A GLN A 1 4 ? -1.26863 -0.27460 2.89964 0.630 5.98124 ? 4 GLN A HE21 1 ATOM 93 H HE21 B GLN A 1 4 ? 0.67879 -0.48643 3.97118 0.370 6.18704 ? 4 GLN A HE21 1 ATOM 94 H HE22 A GLN A 1 4 ? -0.36198 -1.40407 2.56216 0.630 6.71461 ? 4 GLN A HE22 1 ATOM 95 H HE22 B GLN A 1 4 ? 1.03707 -1.58960 3.03314 0.370 6.59642 ? 4 GLN A HE22 1 ATOM 96 N N . TRP A 1 5 ? 0.20576 4.58935 4.22047 1.000 3.10551 ? 5 TRP A N 1 ATOM 97 C CA . TRP A 1 5 ? 0.59962 4.90860 5.57940 1.000 3.44364 ? 5 TRP A CA 1 ATOM 98 C C . TRP A 1 5 ? -0.00040 3.84066 6.48940 1.000 3.14278 ? 5 TRP A C 1 ATOM 99 O O . TRP A 1 5 ? -1.20484 3.57393 6.41667 1.000 3.75886 ? 5 TRP A O 1 ATOM 100 C CB . TRP A 1 5 ? 0.04310 6.28284 5.96579 1.000 4.38894 ? 5 TRP A CB 1 ATOM 101 C CG . TRP A 1 5 ? 0.11403 6.56815 7.43428 1.000 4.61274 ? 5 TRP A CG 1 ATOM 102 C CD1 . TRP A 1 5 ? -0.87864 6.38233 8.35320 1.000 6.70126 ? 5 TRP A CD1 1 ATOM 103 C CD2 . TRP A 1 5 ? 1.24064 7.06819 8.15785 1.000 5.11025 ? 5 TRP A CD2 1 ATOM 104 N NE1 . TRP A 1 5 ? -0.44928 6.73013 9.59740 1.000 7.43715 ? 5 TRP A NE1 1 ATOM 105 C CE2 . TRP A 1 5 ? 0.84952 7.15058 9.51022 1.000 6.21437 ? 5 TRP A CE2 1 ATOM 106 C CE3 . TRP A 1 5 ? 2.54184 7.43930 7.80781 1.000 5.57636 ? 5 TRP A CE3 1 ATOM 107 C CZ2 . TRP A 1 5 ? 1.70403 7.60883 10.50392 1.000 7.06475 ? 5 TRP A CZ2 1 ATOM 108 C CZ3 . TRP A 1 5 ? 3.38360 7.89884 8.78948 1.000 6.59852 ? 5 TRP A CZ3 1 ATOM 109 C CH2 . TRP A 1 5 ? 2.96813 7.98365 10.12065 1.000 7.11318 ? 5 TRP A CH2 1 ATOM 110 H H A TRP A 1 5 ? -0.63007 4.40569 4.14867 0.630 3.92548 ? 5 TRP A H 1 ATOM 111 H H B TRP A 1 5 ? -0.64803 4.55696 4.12698 0.370 3.87235 ? 5 TRP A H 1 ATOM 112 H HA . TRP A 1 5 ? 1.56354 4.90664 5.66574 1.000 3.73553 ? 5 TRP A HA 1 ATOM 113 H HB2 . TRP A 1 5 ? 0.56096 6.96836 5.51519 1.000 4.35837 ? 5 TRP A HB2 1 ATOM 114 H HB3 . TRP A 1 5 ? -0.88561 6.33067 5.69259 1.000 4.45594 ? 5 TRP A HB3 1 ATOM 115 H HD1 . TRP A 1 5 ? -1.72958 6.05831 8.15687 1.000 5.81029 ? 5 TRP A HD1 1 ATOM 116 H HE1 . TRP A 1 5 ? -0.91628 6.69418 10.32000 1.000 7.96921 ? 5 TRP A HE1 1 ATOM 117 H HE3 . TRP A 1 5 ? 2.83096 7.39487 6.92437 1.000 5.21867 ? 5 TRP A HE3 1 ATOM 118 H HZ2 . TRP A 1 5 ? 1.42564 7.66462 11.38812 1.000 7.02347 ? 5 TRP A HZ2 1 ATOM 119 H HZ3 . TRP A 1 5 ? 4.24842 8.14849 8.56464 1.000 5.47898 ? 5 TRP A HZ3 1 ATOM 120 H HH2 . TRP A 1 5 ? 3.57249 8.28693 10.75899 1.000 6.23119 ? 5 TRP A HH2 1 ATOM 121 N N . LEU A 1 6 ? 0.84942 3.21323 7.31358 1.000 3.56941 ? 6 LEU A N 1 ATOM 122 C CA . LEU A 1 6 ? 0.39210 2.22685 8.30411 1.000 4.13190 ? 6 LEU A CA 1 ATOM 123 C C . LEU A 1 6 ? 0.97483 2.53695 9.66690 1.000 5.20779 ? 6 LEU A C 1 ATOM 124 O O . LEU A 1 6 ? 2.15694 2.96429 9.73542 1.000 5.72329 ? 6 LEU A O 1 ATOM 125 C CB . LEU A 1 6 ? 0.77416 0.76797 7.97663 1.000 5.37338 ? 6 LEU A CB 1 ATOM 126 C CG . LEU A 1 6 ? 0.31107 0.20126 6.64043 1.000 5.13003 ? 6 LEU A CG 1 ATOM 127 C CD1 . LEU A 1 6 ? 1.00501 -1.13033 6.36311 1.000 8.17320 ? 6 LEU A CD1 1 ATOM 128 C CD2 . LEU A 1 6 ? -1.17047 0.11906 6.54453 1.000 6.63767 ? 6 LEU A CD2 1 ATOM 129 O OXT . LEU A 1 6 ? 0.28214 2.28941 10.66611 1.000 6.06017 -1 6 LEU A OXT 1 ATOM 130 H H . LEU A 1 6 ? 1.69908 3.35542 7.32791 1.000 4.84827 ? 6 LEU A H 1 ATOM 131 H HA . LEU A 1 6 ? -0.57585 2.27455 8.37730 1.000 5.08653 ? 6 LEU A HA 1 ATOM 132 H HB2 . LEU A 1 6 ? 1.74236 0.70919 7.97942 1.000 5.33638 ? 6 LEU A HB2 1 ATOM 133 H HB3 . LEU A 1 6 ? 0.41774 0.19753 8.67902 1.000 5.51313 ? 6 LEU A HB3 1 ATOM 134 H HG . LEU A 1 6 ? 0.60934 0.80282 5.93826 1.000 5.26543 ? 6 LEU A HG 1 ATOM 135 H HD11 . LEU A 1 6 ? 0.65757 -1.52709 5.55423 1.000 6.19102 ? 6 LEU A HD11 1 ATOM 136 H HD12 . LEU A 1 6 ? 1.96353 -0.99821 6.29701 1.000 6.47213 ? 6 LEU A HD12 1 ATOM 137 H HD13 . LEU A 1 6 ? 0.80467 -1.71083 7.11307 1.000 5.68398 ? 6 LEU A HD13 1 ATOM 138 H HD21 . LEU A 1 6 ? -1.41105 -0.21158 5.66231 1.000 5.45277 ? 6 LEU A HD21 1 ATOM 139 H HD22 . LEU A 1 6 ? -1.48437 -0.49182 7.23571 1.000 5.10484 ? 6 LEU A HD22 1 ATOM 140 H HD23 . LEU A 1 6 ? -1.54764 1.00397 6.68201 1.000 5.87806 ? 6 LEU A HD23 1 HETATM 141 O O A HOH B 2 . ? 1.01922 -1.41812 -0.30846 0.630 8.75456 ? 101 HOH A O 1 HETATM 142 O O . HOH B 2 . ? 2.88716 4.80217 11.62119 1.000 8.29240 ? 102 HOH A O 1 HETATM 143 O O . HOH B 2 . ? -2.335 -1.685 -1.735 1.000 5.72438 ? 103 HOH A O 1 HETATM 144 O O . HOH B 2 . ? 0.94516 5.20699 -10.12409 1.000 8.23983 ? 104 HOH A O 1 HETATM 145 O O . HOH B 2 . ? 1.448 2.413 13.223 1.000 10.23578 ? 105 HOH A O 1 #