data_8DDG # _entry.id 8DDG # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.392 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8DDG pdb_00008ddg 10.2210/pdb8ddg/pdb WWPDB D_1000266472 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2022-09-28 2 'Structure model' 1 1 2024-05-22 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8DDG _pdbx_database_status.recvd_initial_deposition_date 2022-06-18 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type PDB . 8DDH unspecified PDB . 8DDF unspecified # loop_ _pdbx_contact_author.id _pdbx_contact_author.email _pdbx_contact_author.name_first _pdbx_contact_author.name_last _pdbx_contact_author.name_mi _pdbx_contact_author.role _pdbx_contact_author.identifier_ORCID 2 jraskato@ucsc.edu Jevgenij Raskatov A 'principal investigator/group leader' 0000-0002-0082-9113 3 nwvlahakis@g.ucla.edu Niko Vlahakis W 'principal investigator/group leader' 0000-0002-5092-0265 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Sawaya, M.R.' 1 0000-0003-0874-9043 'Hazari, A.' 2 ? 'Eisenberg, D.E.' 3 0000-0003-2432-5419 'Vlahakis, N.W.' 4 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Chem Sci' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2041-6520 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 13 _citation.language ? _citation.page_first 8947 _citation.page_last 8952 _citation.title 'The rippled beta-sheet layer configuration-a novel supramolecular architecture based on predictions by Pauling and Corey.' _citation.year 2022 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1039/d2sc02531k _citation.pdbx_database_id_PubMed 36091211 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Hazari, A.' 1 ? primary 'Sawaya, M.R.' 2 ? primary 'Vlahakis, N.' 3 ? primary 'Johnstone, T.C.' 4 0000-0003-3615-4530 primary 'Boyer, D.' 5 ? primary 'Rodriguez, J.' 6 ? primary 'Eisenberg, D.' 7 ? primary 'Raskatov, J.A.' 8 0000-0002-0082-9113 # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description PHE-TYR-PHE _entity.formula_weight 475.537 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code FYF _entity_poly.pdbx_seq_one_letter_code_can FYF _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 PHE n 1 2 TYR n 1 3 PHE n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 3 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id '32630 ' _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 PHE 1 67 67 PHE PHE A . n A 1 2 TYR 2 68 68 TYR TYR A . n A 1 3 PHE 3 69 69 PHE PHE A . n # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data reduction' ? ? 'Wolfgang Kabsch' Wolfgang.Kabsch@mpimf-heidelberg.mpg.de ? ? ? ? ? http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/ ? XDS ? ? package . 1 ? 'data scaling' ? ? 'Wolfgang Kabsch' ? ? ? ? ? ? http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html ? XSCALE ? ? package . 2 ? refinement ? ? 'Paul D. Adams' PDAdams@lbl.gov ? ? ? ? C++ http://www.phenix-online.org/ ? PHENIX ? ? package . 3 ? 'data extraction' ? ? PDB deposit@deposit.rcsb.org 'Oct. 31, 2020' ? ? ? C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ ? PDB_EXTRACT ? ? package 3.27 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? SHELXD ? ? ? . 5 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 107.048 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 8DDG _cell.details ? _cell.formula_units_Z ? _cell.length_a 23.140 _cell.length_a_esd ? _cell.length_b 4.840 _cell.length_b_esd ? _cell.length_c 19.790 _cell.length_c_esd ? _cell.volume 2119.019 _cell.volume_esd ? _cell.Z_PDB 4 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8DDG _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8DDG _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON CRYSTALLOGRAPHY' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _diffrn.ambient_environment ? _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment ? # _diffrn_detector.area_resol_mean ? _diffrn_detector.details ? _diffrn_detector.detector 'POSITION SENSITIVE DETECTOR' _diffrn_detector.diffrn_id 1 _diffrn_detector.dtime ? _diffrn_detector.pdbx_collection_date 2021-12-14 _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_frequency ? _diffrn_detector.type 'TVIPS TEMCAM-F416' # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type electron # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.0197 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.0197 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source 'ELECTRON MICROSCOPE' _diffrn_source.take-off_angle ? _diffrn_source.target ? _diffrn_source.type ? _diffrn_source.voltage ? # _reflns.B_iso_Wilson_estimate 6.869 _reflns.entry_id 8DDG _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 0.900 _reflns.d_resolution_low 18.92 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 1237 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 71.000 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 4.834 _reflns.pdbx_Rmerge_I_obs 0.113 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 8.630 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 0.932 _reflns.pdbx_scaling_rejects 11 _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.129 _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all 5980 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.991 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? _reflns.pdbx_CC_split_method ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_CC_star _reflns_shell.pdbx_R_split _reflns_shell.pdbx_percent_possible_ellipsoidal _reflns_shell.pdbx_percent_possible_spherical _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous _reflns_shell.pdbx_percent_possible_spherical_anomalous _reflns_shell.pdbx_redundancy_anomalous _reflns_shell.pdbx_CC_half_anomalous _reflns_shell.pdbx_absDiff_over_sigma_anomalous _reflns_shell.pdbx_percent_possible_anomalous 0.900 1.000 ? 5.010 ? 1639 460 ? 332 72.200 ? ? ? ? 0.322 ? ? ? ? ? ? ? ? 4.937 ? ? ? ? 0.366 ? ? 1 1 0.643 ? ? ? ? ? ? ? ? ? ? 1.000 1.100 ? 7.000 ? 1077 302 ? 218 72.200 ? ? ? ? 0.181 ? ? ? ? ? ? ? ? 4.940 ? ? ? ? 0.205 ? ? 2 1 0.963 ? ? ? ? ? ? ? ? ? ? 1.100 1.200 ? 8.950 ? 866 226 ? 174 77.000 ? ? ? ? 0.153 ? ? ? ? ? ? ? ? 4.977 ? ? ? ? 0.173 ? ? 3 1 0.985 ? ? ? ? ? ? ? ? ? ? 1.200 1.500 ? 9.510 ? 1189 345 ? 246 71.300 ? ? ? ? 0.148 ? ? ? ? ? ? ? ? 4.833 ? ? ? ? 0.168 ? ? 4 1 0.973 ? ? ? ? ? ? ? ? ? ? 1.500 2.000 ? 12.950 ? 718 226 ? 152 67.300 ? ? ? ? 0.091 ? ? ? ? ? ? ? ? 4.724 ? ? ? ? 0.104 ? ? 5 1 0.987 ? ? ? ? ? ? ? ? ? ? 2.000 2.300 ? 14.930 ? 202 62 ? 42 67.700 ? ? ? ? 0.097 ? ? ? ? ? ? ? ? 4.810 ? ? ? ? 0.109 ? ? 6 1 0.990 ? ? ? ? ? ? ? ? ? ? 2.300 3.000 ? 13.260 ? 147 59 ? 36 61.000 ? ? ? ? 0.083 ? ? ? ? ? ? ? ? 4.083 ? ? ? ? 0.094 ? ? 7 1 0.995 ? ? ? ? ? ? ? ? ? ? 3.000 5.000 ? 13.940 ? 134 50 ? 34 68.000 ? ? ? ? 0.072 ? ? ? ? ? ? ? ? 3.941 ? ? ? ? 0.085 ? ? 8 1 0.993 ? ? ? ? ? ? ? ? ? ? 5.000 8.000 ? 13.060 ? 8 6 ? 3 50.000 ? ? ? ? 0.034 ? ? ? ? ? ? ? ? 2.667 ? ? ? ? 0.047 ? ? 9 1 1.000 ? ? ? ? ? ? ? ? ? ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 3.26 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 8DDG _refine.pdbx_refine_id 'ELECTRON CRYSTALLOGRAPHY' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 0.90 _refine.ls_d_res_low 5.78 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 1232 _refine.ls_number_reflns_R_free 112 _refine.ls_number_reflns_R_work 1120 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 71.21 _refine.ls_percent_reflns_R_free 9.09 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1704 _refine.ls_R_factor_R_free 0.1851 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1692 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.41 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'FOURIER SYNTHESIS' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'GeoStd + Monomer Library + CDL v1.2' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1000 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 27.6089 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.0753 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'ELECTRON CRYSTALLOGRAPHY' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 0.90 _refine_hist.d_res_low 5.78 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 35 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 35 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'ELECTRON CRYSTALLOGRAPHY' ? 0.0200 ? 37 ? f_bond_d ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 1.2536 ? 49 ? f_angle_d ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 0.0903 ? 3 ? f_chiral_restr ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 0.0078 ? 6 ? f_plane_restr ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 19.2006 ? 4 ? f_dihedral_angle_d ? ? # _refine_ls_shell.pdbx_refine_id 'ELECTRON CRYSTALLOGRAPHY' _refine_ls_shell.d_res_high 0.90 _refine_ls_shell.d_res_low 5.78 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 112 _refine_ls_shell.number_reflns_R_work 1120 _refine_ls_shell.percent_reflns_obs 71.21 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.1851 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.1692 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_R_complete ? _refine_ls_shell.pdbx_total_number_of_bins_used ? _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 8DDG _struct.title 'FYF peptide forms a standard beta-sheet' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8DDG _struct_keywords.text 'Rippled beta-sheet, Racemic peptide, PROTEIN FIBRIL' _struct_keywords.pdbx_keywords 'PROTEIN FIBRIL' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 8DDG _struct_ref.pdbx_db_accession 8DDG _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 8DDG _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 3 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 8DDG _struct_ref_seq.db_align_beg 67 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 69 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 67 _struct_ref_seq.pdbx_auth_seq_align_end 69 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A 1 2 A 1 3 A 1 4 A 1 5 A # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 1_545 x,y-1,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 -4.8400000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 1_565 x,y+1,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 4.8400000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 4 'crystal symmetry operation' 1_535 x,y-2,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 -9.6800000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 5 'crystal symmetry operation' 1_575 x,y+2,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 9.6800000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # loop_ _space_group_symop.id _space_group_symop.operation_xyz 1 x,y,z 2 -x,y,-z 3 x+1/2,y+1/2,z 4 -x+1/2,y+1/2,-z # _em_3d_fitting.entry_id 8DDG _em_3d_fitting.id 1 _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_protocol OTHER _em_3d_fitting.ref_space RECIPROCAL _em_3d_fitting.target_criteria ? _em_3d_fitting.method ? # _em_3d_reconstruction.entry_id 8DDG _em_3d_reconstruction.id 1 _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.details ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.num_particles ? _em_3d_reconstruction.resolution ? _em_3d_reconstruction.resolution_method 'DIFFRACTION PATTERN/LAYERLINES' _em_3d_reconstruction.symmetry_type '3D CRYSTAL' _em_3d_reconstruction.method ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.magnification_calibration ? # _em_buffer.id 1 _em_buffer.details ? _em_buffer.pH 4 _em_buffer.specimen_id 1 _em_buffer.name ? # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.details ? _em_entity_assembly.name 'FYF peptide' _em_entity_assembly.source RECOMBINANT _em_entity_assembly.type COMPLEX _em_entity_assembly.entity_id_list 1 _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? # _em_imaging.id 1 _em_imaging.entry_id 8DDG _em_imaging.accelerating_voltage 300 _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.calibrated_defocus_max ? _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_magnification ? _em_imaging.cryogen ? _em_imaging.details ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.microscope_model 'FEI TECNAI F30' _em_imaging.mode DIFFRACTION _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_max 5000 _em_imaging.nominal_defocus_min ? _em_imaging.nominal_magnification ? _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? _em_imaging.residual_tilt ? _em_imaging.specimen_holder_model ? _em_imaging.specimen_id 1 _em_imaging.citation_id ? _em_imaging.date ? _em_imaging.temperature ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.astigmatism ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? _em_imaging.specimen_holder_type ? # _em_experiment.entry_id 8DDG _em_experiment.id 1 _em_experiment.aggregation_state '3D ARRAY' _em_experiment.reconstruction_method CRYSTALLOGRAPHY _em_experiment.entity_assembly_id 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal PHE N N N N 1 PHE CA C N S 2 PHE C C N N 3 PHE O O N N 4 PHE CB C N N 5 PHE CG C Y N 6 PHE CD1 C Y N 7 PHE CD2 C Y N 8 PHE CE1 C Y N 9 PHE CE2 C Y N 10 PHE CZ C Y N 11 PHE OXT O N N 12 PHE H H N N 13 PHE H2 H N N 14 PHE HA H N N 15 PHE HB2 H N N 16 PHE HB3 H N N 17 PHE HD1 H N N 18 PHE HD2 H N N 19 PHE HE1 H N N 20 PHE HE2 H N N 21 PHE HZ H N N 22 PHE HXT H N N 23 TYR N N N N 24 TYR CA C N S 25 TYR C C N N 26 TYR O O N N 27 TYR CB C N N 28 TYR CG C Y N 29 TYR CD1 C Y N 30 TYR CD2 C Y N 31 TYR CE1 C Y N 32 TYR CE2 C Y N 33 TYR CZ C Y N 34 TYR OH O N N 35 TYR OXT O N N 36 TYR H H N N 37 TYR H2 H N N 38 TYR HA H N N 39 TYR HB2 H N N 40 TYR HB3 H N N 41 TYR HD1 H N N 42 TYR HD2 H N N 43 TYR HE1 H N N 44 TYR HE2 H N N 45 TYR HH H N N 46 TYR HXT H N N 47 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PHE N CA sing N N 1 PHE N H sing N N 2 PHE N H2 sing N N 3 PHE CA C sing N N 4 PHE CA CB sing N N 5 PHE CA HA sing N N 6 PHE C O doub N N 7 PHE C OXT sing N N 8 PHE CB CG sing N N 9 PHE CB HB2 sing N N 10 PHE CB HB3 sing N N 11 PHE CG CD1 doub Y N 12 PHE CG CD2 sing Y N 13 PHE CD1 CE1 sing Y N 14 PHE CD1 HD1 sing N N 15 PHE CD2 CE2 doub Y N 16 PHE CD2 HD2 sing N N 17 PHE CE1 CZ doub Y N 18 PHE CE1 HE1 sing N N 19 PHE CE2 CZ sing Y N 20 PHE CE2 HE2 sing N N 21 PHE CZ HZ sing N N 22 PHE OXT HXT sing N N 23 TYR N CA sing N N 24 TYR N H sing N N 25 TYR N H2 sing N N 26 TYR CA C sing N N 27 TYR CA CB sing N N 28 TYR CA HA sing N N 29 TYR C O doub N N 30 TYR C OXT sing N N 31 TYR CB CG sing N N 32 TYR CB HB2 sing N N 33 TYR CB HB3 sing N N 34 TYR CG CD1 doub Y N 35 TYR CG CD2 sing Y N 36 TYR CD1 CE1 sing Y N 37 TYR CD1 HD1 sing N N 38 TYR CD2 CE2 doub Y N 39 TYR CD2 HD2 sing N N 40 TYR CE1 CZ doub Y N 41 TYR CE1 HE1 sing N N 42 TYR CE2 CZ sing Y N 43 TYR CE2 HE2 sing N N 44 TYR CZ OH sing N N 45 TYR OH HH sing N N 46 TYR OXT HXT sing N N 47 # _em_3d_crystal_entity.id 1 _em_3d_crystal_entity.image_processing_id 1 _em_3d_crystal_entity.angle_alpha 90 _em_3d_crystal_entity.angle_beta 107.05 _em_3d_crystal_entity.angle_gamma 90 _em_3d_crystal_entity.length_a 23.140 _em_3d_crystal_entity.length_b 4.840 _em_3d_crystal_entity.length_c 19.790 _em_3d_crystal_entity.space_group_name C2 _em_3d_crystal_entity.space_group_num 5 # _em_ctf_correction.id 1 _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.type NONE _em_ctf_correction.details ? # _em_diffraction.id 1 _em_diffraction.camera_length 1320 _em_diffraction.imaging_id 1 _em_diffraction.tilt_angle_list ? # _em_diffraction_shell.id 1 _em_diffraction_shell.em_diffraction_stats_id 1 _em_diffraction_shell.fourier_space_coverage 72.2 _em_diffraction_shell.high_resolution 0.9 _em_diffraction_shell.low_resolution 1 _em_diffraction_shell.multiplicity 4.9 _em_diffraction_shell.num_structure_factors 332 _em_diffraction_shell.phase_residual 13.5 # _em_diffraction_stats.id 1 _em_diffraction_stats.details ? _em_diffraction_stats.image_processing_id 1 _em_diffraction_stats.fourier_space_coverage 71.0 _em_diffraction_stats.high_resolution 0.9 _em_diffraction_stats.num_intensities_measured 5980 _em_diffraction_stats.num_structure_factors 1237 _em_diffraction_stats.overall_phase_error ? _em_diffraction_stats.overall_phase_residual ? _em_diffraction_stats.phase_error_rejection_criteria 20 _em_diffraction_stats.r_merge 0.113 _em_diffraction_stats.r_sym ? # _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.ncbi_tax_id 32644 _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organism unidentified _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? # _em_entity_assembly_recombinant.id 2 _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.ncbi_tax_id 32644 _em_entity_assembly_recombinant.organism unidentified _em_entity_assembly_recombinant.plasmid ? _em_entity_assembly_recombinant.strain ? # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.avg_electron_dose_per_image 0.0192 _em_image_recording.average_exposure_time 3 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'TVIPS TEMCAM-F416 (4k x 4k)' _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? _em_image_recording.avg_electron_dose_per_subtomogram ? # loop_ _em_software.id _em_software.category _em_software.details _em_software.name _em_software.version _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id 1 'IMAGE ACQUISITION' ? ? ? ? ? 1 2 MASKING ? ? ? ? ? ? 3 'CTF CORRECTION' ? ? ? 1 ? ? 4 'LAYERLINE INDEXING' ? ? ? ? ? ? 5 'DIFFRACTION INDEXING' ? ? ? ? ? ? 6 'MODEL FITTING' ? ? ? ? 1 ? 7 OTHER ? ? ? ? ? ? 8 'MOLECULAR REPLACEMENT' ? ? ? 1 ? ? 9 'LATTICE DISTORTION CORRECTION' ? ? ? 1 ? ? 10 'SYMMETRY DETERMINATION' ? ? ? 1 ? ? 11 'CRYSTALLOGRAPHY MERGING' ? ? ? 1 ? ? 12 RECONSTRUCTION ? ? ? 1 ? ? 13 'MODEL REFINEMENT' ? ? ? ? 1 ? # _em_specimen.id 1 _em_specimen.experiment_id 1 _em_specimen.concentration ? _em_specimen.details crystal _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied NO # _pdbx_audit_support.funding_organization 'Not funded' _pdbx_audit_support.country ? _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _space_group.name_H-M_alt 'C 1 2 1' _space_group.name_Hall 'C 2y' _space_group.IT_number 5 _space_group.crystal_system monoclinic _space_group.id 1 # _atom_sites.entry_id 8DDG _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.043215 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.013252 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.206612 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.052853 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.scat_dispersion_real _atom_type.scat_dispersion_imag _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_a4 _atom_type.pdbx_scat_Cromer_Mann_a5 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_b4 _atom_type.pdbx_scat_Cromer_Mann_b5 _atom_type.scat_Cromer_Mann_c _atom_type.scat_source _atom_type.scat_dispersion_source C ? ? 0.08930 0.25630 0.75700 1.04870 0.35750 0.24650 1.71000 6.40940 18.61130 50.25230 0.0 ;5-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? H ? ? 0.03490 0.12010 0.19700 0.05730 0.11950 0.53470 3.58670 12.34710 18.95250 38.62690 0.0 ;5-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? N ? ? 0.10220 0.32190 0.79820 0.81970 0.17150 0.24510 1.74810 6.19250 17.38940 48.14310 0.0 ;5-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O ? ? 0.09740 0.29210 0.69100 0.69900 0.20390 0.20670 1.38150 4.69430 12.71050 32.47260 0.0 ;5-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_alt_id _atom_site.label_comp_id _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.label_seq_id _atom_site.pdbx_PDB_ins_code _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_seq_id _atom_site.auth_comp_id _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.pdbx_PDB_model_num ATOM 1 N N . PHE A 1 1 ? 11.80348 3.94046 5.90951 1.000 3.25491 ? 67 PHE A N 1 ATOM 2 C CA . PHE A 1 1 ? 10.56644 4.72076 5.73682 1.000 2.88207 ? 67 PHE A CA 1 ATOM 3 C C . PHE A 1 1 ? 9.41053 3.84589 6.05664 1.000 2.55919 ? 67 PHE A C 1 ATOM 4 O O . PHE A 1 1 ? 9.52946 2.64151 6.19699 1.000 3.33104 ? 67 PHE A O 1 ATOM 5 C CB . PHE A 1 1 ? 10.42695 5.20378 4.30235 1.000 3.09064 ? 67 PHE A CB 1 ATOM 6 C CG . PHE A 1 1 ? 10.16577 4.12411 3.32124 1.000 2.89990 ? 67 PHE A CG 1 ATOM 7 C CD1 . PHE A 1 1 ? 8.88269 3.63123 3.10753 1.000 2.84982 ? 67 PHE A CD1 1 ATOM 8 C CD2 . PHE A 1 1 ? 11.19907 3.60949 2.58687 1.000 3.19820 ? 67 PHE A CD2 1 ATOM 9 C CE1 . PHE A 1 1 ? 8.65157 2.62256 2.20368 1.000 3.11815 ? 67 PHE A CE1 1 ATOM 10 C CE2 . PHE A 1 1 ? 10.96774 2.62488 1.66904 1.000 3.67156 ? 67 PHE A CE2 1 ATOM 11 C CZ . PHE A 1 1 ? 9.68870 2.13159 1.47305 1.000 3.60915 ? 67 PHE A CZ 1 ATOM 12 H H1 . PHE A 1 1 ? 12.49765 4.41738 5.62180 1.000 3.98494 ? 67 PHE A H1 1 ATOM 13 H H2 . PHE A 1 1 ? 11.74657 3.18646 5.44011 1.000 3.98494 ? 67 PHE A H2 1 ATOM 14 H H3 . PHE A 1 1 ? 11.91374 3.74602 6.77098 1.000 3.98494 ? 67 PHE A H3 1 ATOM 15 H HA . PHE A 1 1 ? 10.58242 5.49915 6.31540 1.000 3.53754 ? 67 PHE A HA 1 ATOM 16 H HB2 . PHE A 1 1 ? 9.68670 5.82891 4.25604 1.000 3.78781 ? 67 PHE A HB2 1 ATOM 17 H HB3 . PHE A 1 1 ? 11.25061 5.64506 4.04205 1.000 3.78781 ? 67 PHE A HB3 1 ATOM 18 H HD1 . PHE A 1 1 ? 8.16952 3.99037 3.58431 1.000 3.49883 ? 67 PHE A HD1 1 ATOM 19 H HD2 . PHE A 1 1 ? 12.06239 3.93139 2.71315 1.000 3.91689 ? 67 PHE A HD2 1 ATOM 20 H HE1 . PHE A 1 1 ? 7.79459 2.27888 2.09249 1.000 3.82083 ? 67 PHE A HE1 1 ATOM 21 H HE2 . PHE A 1 1 ? 11.67512 2.28285 1.17152 1.000 4.48491 ? 67 PHE A HE2 1 ATOM 22 H HZ . PHE A 1 1 ? 9.53883 1.46492 0.84219 1.000 4.41002 ? 67 PHE A HZ 1 ATOM 23 N N . TYR A 1 2 ? 8.25907 4.46589 6.12456 1.000 3.11217 ? 68 TYR A N 1 ATOM 24 C CA . TYR A 1 2 ? 7.04750 3.68414 6.11211 1.000 2.82306 ? 68 TYR A CA 1 ATOM 25 C C . TYR A 1 2 ? 5.95180 4.57935 5.61329 1.000 3.52131 ? 68 TYR A C 1 ATOM 26 O O . TYR A 1 2 ? 6.11039 5.79326 5.50481 1.000 2.68999 ? 68 TYR A O 1 ATOM 27 C CB . TYR A 1 2 ? 6.70767 3.15262 7.48308 1.000 2.57773 ? 68 TYR A CB 1 ATOM 28 C CG . TYR A 1 2 ? 6.17769 4.13935 8.45471 1.000 2.66531 ? 68 TYR A CG 1 ATOM 29 C CD1 . TYR A 1 2 ? 7.01242 5.06564 9.06273 1.000 2.98297 ? 68 TYR A CD1 1 ATOM 30 C CD2 . TYR A 1 2 ? 4.85150 4.11606 8.81057 1.000 3.48383 ? 68 TYR A CD2 1 ATOM 31 C CE1 . TYR A 1 2 ? 6.52937 5.93548 9.98194 1.000 3.01866 ? 68 TYR A CE1 1 ATOM 32 C CE2 . TYR A 1 2 ? 4.36589 4.97330 9.71411 1.000 4.14886 ? 68 TYR A CE2 1 ATOM 33 C CZ . TYR A 1 2 ? 5.20147 5.88989 10.29969 1.000 3.30991 ? 68 TYR A CZ 1 ATOM 34 O OH . TYR A 1 2 ? 4.69494 6.75043 11.22359 1.000 3.65105 ? 68 TYR A OH 1 ATOM 35 H H . TYR A 1 2 ? 8.15361 5.31777 6.17731 1.000 3.81365 ? 68 TYR A H 1 ATOM 36 H HA . TYR A 1 2 ? 7.15425 2.92678 5.51553 1.000 3.46672 ? 68 TYR A HA 1 ATOM 37 H HB2 . TYR A 1 2 ? 6.03419 2.46200 7.38123 1.000 3.17232 ? 68 TYR A HB2 1 ATOM 38 H HB3 . TYR A 1 2 ? 7.51356 2.77571 7.86956 1.000 3.17232 ? 68 TYR A HB3 1 ATOM 39 H HD1 . TYR A 1 2 ? 7.91419 5.08970 8.83660 1.000 3.65861 ? 68 TYR A HD1 1 ATOM 40 H HD2 . TYR A 1 2 ? 4.28260 3.49448 8.41700 1.000 4.25964 ? 68 TYR A HD2 1 ATOM 41 H HE1 . TYR A 1 2 ? 7.09221 6.55330 10.38986 1.000 3.70144 ? 68 TYR A HE1 1 ATOM 42 H HE2 . TYR A 1 2 ? 3.46527 4.94829 9.94467 1.000 5.05768 ? 68 TYR A HE2 1 ATOM 43 H HH . TYR A 1 2 ? 5.23521 6.83858 11.86072 1.000 4.46031 ? 68 TYR A HH 1 ATOM 44 N N . PHE A 1 3 ? 4.83830 3.95955 5.31174 1.000 2.90688 ? 69 PHE A N 1 ATOM 45 C CA . PHE A 1 3 ? 3.69245 4.73208 4.96725 1.000 4.01540 ? 69 PHE A CA 1 ATOM 46 C C . PHE A 1 3 ? 2.46306 3.94382 5.27000 1.000 3.52789 ? 69 PHE A C 1 ATOM 47 O O . PHE A 1 3 ? 1.40366 4.34662 4.81857 1.000 4.56006 ? 69 PHE A O 1 ATOM 48 C CB . PHE A 1 3 ? 3.73549 5.15920 3.51883 1.000 3.66868 ? 69 PHE A CB 1 ATOM 49 C CG . PHE A 1 3 ? 3.78682 4.03970 2.53647 1.000 3.00484 ? 69 PHE A CG 1 ATOM 50 C CD1 . PHE A 1 3 ? 2.63590 3.44575 2.07738 1.000 2.60653 ? 69 PHE A CD1 1 ATOM 51 C CD2 . PHE A 1 3 ? 4.98863 3.61440 2.03272 1.000 2.90705 ? 69 PHE A CD2 1 ATOM 52 C CE1 . PHE A 1 3 ? 2.68690 2.45265 1.14844 1.000 2.86973 ? 69 PHE A CE1 1 ATOM 53 C CE2 . PHE A 1 3 ? 5.03719 2.61930 1.10086 1.000 3.58431 ? 69 PHE A CE2 1 ATOM 54 C CZ . PHE A 1 3 ? 3.87808 2.03409 0.65633 1.000 3.50494 ? 69 PHE A CZ 1 ATOM 55 O OXT . PHE A 1 3 ? 2.52253 2.94305 5.98259 1.000 4.40432 ? 69 PHE A OXT 1 ATOM 56 H H . PHE A 1 3 ? 4.72964 3.10650 5.30153 1.000 3.56730 ? 69 PHE A H 1 ATOM 57 H HA . PHE A 1 3 ? 3.67066 5.55205 5.48501 1.000 4.89753 ? 69 PHE A HA 1 ATOM 58 H HB2 . PHE A 1 3 ? 2.93875 5.67833 3.32747 1.000 4.48147 ? 69 PHE A HB2 1 ATOM 59 H HB3 . PHE A 1 3 ? 4.52678 5.70330 3.38202 1.000 4.48147 ? 69 PHE A HB3 1 ATOM 60 H HD1 . PHE A 1 3 ? 1.81204 3.72588 2.40553 1.000 3.20689 ? 69 PHE A HD1 1 ATOM 61 H HD2 . PHE A 1 3 ? 5.77769 4.00764 2.32877 1.000 3.56750 ? 69 PHE A HD2 1 ATOM 62 H HE1 . PHE A 1 3 ? 1.89929 2.05873 0.84943 1.000 3.52272 ? 69 PHE A HE1 1 ATOM 63 H HE2 . PHE A 1 3 ? 5.85757 2.33682 0.76607 1.000 4.38022 ? 69 PHE A HE2 1 ATOM 64 H HZ . PHE A 1 3 ? 3.90993 1.35497 0.02176 1.000 4.28497 ? 69 PHE A HZ 1 # loop_ _atom_site_anisotrop.id _atom_site_anisotrop.type_symbol _atom_site_anisotrop.pdbx_label_atom_id _atom_site_anisotrop.pdbx_label_alt_id _atom_site_anisotrop.pdbx_label_comp_id _atom_site_anisotrop.pdbx_label_asym_id _atom_site_anisotrop.pdbx_label_seq_id _atom_site_anisotrop.pdbx_PDB_ins_code _atom_site_anisotrop.U[1][1] _atom_site_anisotrop.U[2][2] _atom_site_anisotrop.U[3][3] _atom_site_anisotrop.U[1][2] _atom_site_anisotrop.U[1][3] _atom_site_anisotrop.U[2][3] _atom_site_anisotrop.pdbx_auth_seq_id _atom_site_anisotrop.pdbx_auth_comp_id _atom_site_anisotrop.pdbx_auth_asym_id _atom_site_anisotrop.pdbx_auth_atom_id 1 N N . PHE A 1 ? 0.02199 0.02264 0.07904 0.00126 -0.00825 0.00110 67 PHE A N 2 C CA . PHE A 1 ? 0.01735 0.02037 0.07178 0.00199 -0.00650 -0.01028 67 PHE A CA 3 C C . PHE A 1 ? 0.01534 0.01629 0.06560 0.00100 -0.00750 -0.00018 67 PHE A C 4 O O . PHE A 1 ? 0.02134 0.03285 0.07237 -0.00618 -0.00576 0.00298 67 PHE A O 5 C CB . PHE A 1 ? 0.02046 0.03115 0.06582 -0.00154 -0.00888 -0.01128 67 PHE A CB 6 C CG . PHE A 1 ? 0.02122 0.02685 0.06211 0.00781 -0.00364 -0.00211 67 PHE A CG 7 C CD1 . PHE A 1 ? 0.02269 0.03092 0.05468 0.00383 -0.00584 -0.02252 67 PHE A CD1 8 C CD2 . PHE A 1 ? 0.01819 0.04361 0.05971 0.00346 -0.00654 0.00786 67 PHE A CD2 9 C CE1 . PHE A 1 ? 0.03225 0.04012 0.04610 0.00112 -0.01333 -0.00663 67 PHE A CE1 10 C CE2 . PHE A 1 ? 0.03647 0.04545 0.05758 0.02153 0.00211 0.01233 67 PHE A CE2 11 C CZ . PHE A 1 ? 0.04241 0.04555 0.04917 0.01432 -0.01262 0.01721 67 PHE A CZ 23 N N . TYR A 2 ? 0.01940 0.02163 0.07721 0.00036 -0.00088 -0.00277 68 TYR A N 24 C CA . TYR A 2 ? 0.01890 0.01629 0.07207 0.00170 -0.00747 -0.00429 68 TYR A CA 25 C C . TYR A 2 ? 0.02182 0.03979 0.07218 0.00684 -0.00839 -0.00093 68 TYR A C 26 O O . TYR A 2 ? 0.01827 0.01913 0.06481 -0.00031 -0.00473 -0.00817 68 TYR A O 27 C CB . TYR A 2 ? 0.01664 0.01541 0.06589 0.00064 -0.00037 -0.00783 68 TYR A CB 28 C CG . TYR A 2 ? 0.01809 0.02746 0.05572 -0.00744 -0.00107 0.00202 68 TYR A CG 29 C CD1 . TYR A 2 ? 0.01704 0.04859 0.04771 0.00087 -0.01126 -0.00300 68 TYR A CD1 30 C CD2 . TYR A 2 ? 0.02129 0.05101 0.06007 -0.01180 0.00010 -0.01016 68 TYR A CD2 31 C CE1 . TYR A 2 ? 0.02421 0.04318 0.04730 -0.00628 -0.00931 0.00700 68 TYR A CE1 32 C CE2 . TYR A 2 ? 0.02648 0.07073 0.06043 -0.01155 0.00071 -0.02350 68 TYR A CE2 33 C CZ . TYR A 2 ? 0.02628 0.04444 0.05505 -0.01049 0.00233 -0.00432 68 TYR A CZ 34 O OH . TYR A 2 ? 0.03786 0.04329 0.05757 -0.00118 0.00425 0.00069 68 TYR A OH 44 N N . PHE A 3 ? 0.01916 0.01763 0.07366 0.00010 -0.00573 -0.00606 69 PHE A N 45 C CA . PHE A 3 ? 0.02224 0.04793 0.08239 0.00028 -0.00508 -0.01307 69 PHE A CA 46 C C . PHE A 3 ? 0.02223 0.02882 0.08299 0.00179 -0.00364 -0.01497 69 PHE A C 47 O O . PHE A 3 ? 0.02808 0.06028 0.08491 0.00986 -0.01130 -0.01931 69 PHE A O 48 C CB . PHE A 3 ? 0.02378 0.04016 0.07545 0.00090 -0.00191 -0.03258 69 PHE A CB 49 C CG . PHE A 3 ? 0.01878 0.02423 0.07116 0.00204 -0.00414 -0.00396 69 PHE A CG 50 C CD1 . PHE A 3 ? 0.01833 0.02226 0.05844 -0.00129 -0.00946 -0.00534 69 PHE A CD1 51 C CD2 . PHE A 3 ? 0.01844 0.02575 0.06627 -0.00305 0.00174 0.00771 69 PHE A CD2 52 C CE1 . PHE A 3 ? 0.01950 0.02990 0.05963 -0.00344 -0.01185 0.00391 69 PHE A CE1 53 C CE2 . PHE A 3 ? 0.02187 0.04141 0.07290 -0.00771 -0.00476 0.01002 69 PHE A CE2 54 C CZ . PHE A 3 ? 0.02465 0.04676 0.06176 -0.01360 -0.01031 0.00204 69 PHE A CZ 55 O OXT . PHE A 3 ? 0.02210 0.06964 0.07561 0.01241 -0.00077 0.00154 69 PHE A OXT #