data_8HU5 # _entry.id 8HU5 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.376 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8HU5 pdb_00008hu5 10.2210/pdb8hu5/pdb WWPDB D_1300033721 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.details '8HIS contains the same ligand and will be submitted to the same paper.' _pdbx_database_related.db_id 8HIS _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8HU5 _pdbx_database_status.recvd_initial_deposition_date 2022-12-22 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Aoyama, H.' 1 0000-0001-7915-8975 'Obika, H.' 2 0000-0002-6842-6812 'Yamaguchi, T.' 3 0000-0003-3180-0257 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_id_ASTM NARHAD _citation.journal_id_CSD 0389 _citation.journal_id_ISSN 1362-4962 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 51 _citation.language ? _citation.page_first 7749 _citation.page_last 7761 _citation.title ;Mechanism of the extremely high duplex-forming ability of oligonucleotides modified with N-tert-butylguanidine- or N-tert-butyl-N'- methylguanidine-bridged nucleic acids. ; _citation.year 2023 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1093/nar/gkad608 _citation.pdbx_database_id_PubMed 37462081 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Yamaguchi, T.' 1 ? primary 'Horie, N.' 2 ? primary 'Aoyama, H.' 3 ? primary 'Kumagai, S.' 4 ? primary 'Obika, S.' 5 ? # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 8HU5 _cell.details ? _cell.formula_units_Z ? _cell.length_a 42.494 _cell.length_a_esd ? _cell.length_b 42.494 _cell.length_b_esd ? _cell.length_c 24.315 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 8 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8HU5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*GP*(LR6)P*GP*(BRU)P*AP*CP*AP*C)-3') ; 2630.686 1 ? ? ? ? 2 water nat water 18.015 50 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(DG)(LR6)(DG)(BRU)(DA)(DC)(DA)(DC)' _entity_poly.pdbx_seq_one_letter_code_can GXGUACAC _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 LR6 n 1 3 DG n 1 4 BRU n 1 5 DA n 1 6 DC n 1 7 DA n 1 8 DC n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 8 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 8HU5 _struct_ref.pdbx_db_accession 8HU5 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 8HU5 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 8 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 8HU5 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 8 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 8 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight BRU 'DNA linking' n "5-BROMO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE" ? 'C9 H12 Br N2 O8 P' 387.078 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 HOH non-polymer . WATER ? 'H2 O' 18.015 LR6 'DNA linking' . ;[(1R,3R,4R,7S)-5-(N'-tert-butyl-N-methyl-carbamimidoyl)-3-[5-methyl-2,4-bis(oxidanylidene)pyrimidin-1-yl]-7-oxidanyl-2-oxa-5-azabicyclo[2.2.1]heptan-1-yl]methyl dihydrogen phosphate ; ? 'C17 H28 N5 O8 P' 461.407 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8HU5 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.11 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 41.69 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;10% v/v (+/-)-2-Methyl-2,4-pentanediol, 0.040M Sodium cacodylate trihydrate pH 6.0, 0.012M Spermine tetrahydrochloride, 0.012M Sodium chloride, 0.080M Potassium chloride ; _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp 293.15 # _diffrn.ambient_environment ? _diffrn.ambient_temp 90 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER X 16M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2019-06-26 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9199 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SPRING-8 BEAMLINE BL44XU' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.9199 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL44XU _diffrn_source.pdbx_synchrotron_site SPring-8 # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 8HU5 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 0.93 _reflns.d_resolution_low 21.1 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 27813 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 97.7 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 6.56 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 15.97 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.09 _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.99 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs 0.083 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_CC_star _reflns_shell.pdbx_R_split _reflns_shell.percent_possible_all _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_percent_possible_ellipsoidal _reflns_shell.pdbx_percent_possible_spherical _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous _reflns_shell.pdbx_percent_possible_spherical_anomalous _reflns_shell.pdbx_redundancy_anomalous _reflns_shell.pdbx_CC_half_anomalous _reflns_shell.pdbx_absDiff_over_sigma_anomalous _reflns_shell.pdbx_percent_possible_anomalous 0.93 0.99 ? ? ? ? ? ? 3969 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.281 ? ? 1 1 0.9259999999999999 ? ? ? ? 0.237 ? ? ? ? ? ? ? ? ? 0.99 1.06 ? ? ? ? ? ? 4352 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.159 ? ? 2 1 0.988 ? ? ? ? 0.147 ? ? ? ? ? ? ? ? ? 1.06 1.14 ? ? ? ? ? ? 4016 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.106 ? ? 3 1 0.9940000000000001 ? ? ? ? 0.099 ? ? ? ? ? ? ? ? ? 1.14 1.25 ? ? ? ? ? ? 3685 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.08800000000000001 ? ? 4 1 0.996 ? ? ? ? 0.081 ? ? ? ? ? ? ? ? ? 1.25 1.4 ? ? ? ? ? ? 3349 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.086 ? ? 5 1 0.996 ? ? ? ? 0.08 ? ? ? ? ? ? ? ? ? 1.40 1.61 ? ? ? ? ? ? 2961 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.081 ? ? 6 1 0.997 ? ? ? ? 0.075 ? ? ? ? ? ? ? ? ? 1.61 1.97 ? ? ? ? ? ? 2493 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.07200000000000001 ? ? 7 1 0.997 ? ? ? ? 0.067 ? ? ? ? ? ? ? ? ? 1.97 2.77 ? ? ? ? ? ? 1931 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.079 ? ? 8 1 0.992 ? ? ? ? 0.073 ? ? ? ? ? ? ? ? ? 2.77 10 ? ? ? ? ? ? 1057 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.115 ? ? 9 1 0.977 ? ? ? ? 0.10300000000000001 ? ? ? ? ? ? ? ? ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 8HU5 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 0.93 _refine.ls_d_res_low 21.10 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 27813 _refine.ls_number_reflns_R_free 2778 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 97.73 _refine.ls_percent_reflns_R_free 9.99 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1944 _refine.ls_R_factor_R_free 0.2134 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1923 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.41 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 22.27 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.11 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 0.93 _refine_hist.d_res_low 21.10 _refine_hist.number_atoms_solvent 51 _refine_hist.number_atoms_total 222 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 171 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.008 ? 191 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 2.399 ? 296 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 23.321 ? 85 ? f_dihedral_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.088 ? 31 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.017 ? 10 ? f_plane_restr ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free _refine_ls_shell.R_factor_R_free 'X-RAY DIFFRACTION' 0.93 0.95 . . 87 794 62.00 . . . . 0.3031 . . . . . . . . . . . 0.2761 'X-RAY DIFFRACTION' 0.95 0.96 . . 138 1241 95.00 . . . . 0.2928 . . . . . . . . . . . 0.3228 'X-RAY DIFFRACTION' 0.96 0.98 . . 135 1272 99.00 . . . . 0.2793 . . . . . . . . . . . 0.2963 'X-RAY DIFFRACTION' 0.98 1.00 . . 144 1263 100.00 . . . . 0.2508 . . . . . . . . . . . 0.2956 'X-RAY DIFFRACTION' 1.00 1.03 . . 144 1272 100.00 . . . . 0.2422 . . . . . . . . . . . 0.2460 'X-RAY DIFFRACTION' 1.03 1.05 . . 138 1293 100.00 . . . . 0.2468 . . . . . . . . . . . 0.3015 'X-RAY DIFFRACTION' 1.05 1.08 . . 142 1278 100.00 . . . . 0.2342 . . . . . . . . . . . 0.2676 'X-RAY DIFFRACTION' 1.08 1.10 . . 143 1275 100.00 . . . . 0.2303 . . . . . . . . . . . 0.2418 'X-RAY DIFFRACTION' 1.10 1.14 . . 141 1299 100.00 . . . . 0.2141 . . . . . . . . . . . 0.2669 'X-RAY DIFFRACTION' 1.14 1.17 . . 145 1265 100.00 . . . . 0.2084 . . . . . . . . . . . 0.2211 'X-RAY DIFFRACTION' 1.17 1.22 . . 140 1290 100.00 . . . . 0.2044 . . . . . . . . . . . 0.2337 'X-RAY DIFFRACTION' 1.22 1.26 . . 137 1274 100.00 . . . . 0.1945 . . . . . . . . . . . 0.1970 'X-RAY DIFFRACTION' 1.26 1.32 . . 148 1287 100.00 . . . . 0.1988 . . . . . . . . . . . 0.1972 'X-RAY DIFFRACTION' 1.32 1.39 . . 142 1262 100.00 . . . . 0.2036 . . . . . . . . . . . 0.2211 'X-RAY DIFFRACTION' 1.39 1.48 . . 143 1285 100.00 . . . . 0.1981 . . . . . . . . . . . 0.2298 'X-RAY DIFFRACTION' 1.48 1.59 . . 140 1283 100.00 . . . . 0.1851 . . . . . . . . . . . 0.2032 'X-RAY DIFFRACTION' 1.59 1.75 . . 146 1291 100.00 . . . . 0.1556 . . . . . . . . . . . 0.1800 'X-RAY DIFFRACTION' 1.75 2.01 . . 144 1275 100.00 . . . . 0.1712 . . . . . . . . . . . 0.1896 'X-RAY DIFFRACTION' 2.01 2.53 . . 136 1276 100.00 . . . . 0.1814 . . . . . . . . . . . 0.2162 'X-RAY DIFFRACTION' 2.53 10 . . 145 1260 98.00 . . . . 0.1846 . . . . . . . . . . . 0.1995 # _struct.entry_id 8HU5 _struct.title 'Crystal structure of DNA octamer containing GuNA[Me,tBu]' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8HU5 _struct_keywords.text 'DNA, OLIGONUCLEOTIDE, MODIFIED BASE, Artificial nucleic acid' _struct_keywords.pdbx_keywords DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A DG 1 "O3'" ? ? ? 1_555 A LR6 2 P ? ? A DG 1 A LR6 2 1_555 ? ? ? ? ? ? ? 1.601 ? ? covale2 covale both ? A LR6 2 "O3'" ? ? ? 1_555 A DG 3 P ? ? A LR6 2 A DG 3 1_555 ? ? ? ? ? ? ? 1.602 ? ? covale3 covale both ? A DG 3 "O3'" ? ? ? 1_555 A BRU 4 P ? ? A DG 3 A BRU 4 1_555 ? ? ? ? ? ? ? 1.600 ? ? covale4 covale both ? A BRU 4 "O3'" ? ? ? 1_555 A DA 5 P ? ? A BRU 4 A DA 5 1_555 ? ? ? ? ? ? ? 1.598 ? ? hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 A DC 8 N3 ? ? A DG 1 A DC 8 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 A DC 8 O2 ? ? A DG 1 A DC 8 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 1 O6 ? ? ? 1_555 A DC 8 N4 ? ? A DG 1 A DC 8 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 3 N1 ? ? ? 1_555 A DC 6 N3 ? ? A DG 3 A DC 6 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 3 N2 ? ? ? 1_555 A DC 6 O2 ? ? A DG 3 A DC 6 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 3 O6 ? ? ? 1_555 A DC 6 N4 ? ? A DG 3 A DC 6 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A BRU 4 N3 ? ? ? 1_555 A DA 5 N1 ? ? A BRU 4 A DA 5 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A BRU 4 O4 ? ? ? 1_555 A DA 5 N6 ? ? A BRU 4 A DA 5 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DA 5 N1 ? ? ? 1_555 A BRU 4 N3 ? ? A DA 5 A BRU 4 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DA 5 N6 ? ? ? 1_555 A BRU 4 O4 ? ? A DA 5 A BRU 4 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DC 6 N3 ? ? ? 1_555 A DG 3 N1 ? ? A DC 6 A DG 3 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DC 6 N4 ? ? ? 1_555 A DG 3 O6 ? ? A DC 6 A DG 3 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 6 O2 ? ? ? 1_555 A DG 3 N2 ? ? A DC 6 A DG 3 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 8 N3 ? ? ? 1_555 A DG 1 N1 ? ? A DC 8 A DG 1 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DC 8 N4 ? ? ? 1_555 A DG 1 O6 ? ? A DC 8 A DG 1 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DC 8 O2 ? ? ? 1_555 A DG 1 N2 ? ? A DC 8 A DG 1 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # _atom_sites.entry_id 8HU5 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.023533 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.023533 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.041127 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol BR C N O P # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_alt_id _atom_site.label_comp_id _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.label_seq_id _atom_site.pdbx_PDB_ins_code _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_seq_id _atom_site.auth_comp_id _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.pdbx_PDB_model_num ATOM 1 O "O5'" . DG A 1 1 ? 35.288 -1.844 11.452 1.00 11.70 ? 1 DG A "O5'" 1 ATOM 2 C "C5'" . DG A 1 1 ? 35.609 -3.202 11.168 1.00 11.37 ? 1 DG A "C5'" 1 ATOM 3 C "C4'" . DG A 1 1 ? 34.446 -3.905 10.488 1.00 10.61 ? 1 DG A "C4'" 1 ATOM 4 O "O4'" . DG A 1 1 ? 33.284 -3.879 11.350 1.00 10.44 ? 1 DG A "O4'" 1 ATOM 5 C "C3'" . DG A 1 1 ? 33.986 -3.282 9.184 1.00 9.23 ? 1 DG A "C3'" 1 ATOM 6 O "O3'" . DG A 1 1 ? 34.740 -3.804 8.116 1.00 9.89 ? 1 DG A "O3'" 1 ATOM 7 C "C2'" . DG A 1 1 ? 32.538 -3.739 9.115 1.00 9.34 ? 1 DG A "C2'" 1 ATOM 8 C "C1'" . DG A 1 1 ? 32.118 -3.668 10.577 1.00 10.05 ? 1 DG A "C1'" 1 ATOM 9 N N9 . DG A 1 1 ? 31.551 -2.380 10.927 1.00 9.62 ? 1 DG A N9 1 ATOM 10 C C8 . DG A 1 1 ? 32.112 -1.415 11.724 1.00 9.95 ? 1 DG A C8 1 ATOM 11 N N7 . DG A 1 1 ? 31.370 -0.352 11.843 1.00 10.27 ? 1 DG A N7 1 ATOM 12 C C5 . DG A 1 1 ? 30.256 -0.628 11.062 1.00 9.80 ? 1 DG A C5 1 ATOM 13 C C6 . DG A 1 1 ? 29.112 0.152 10.804 1.00 8.33 ? 1 DG A C6 1 ATOM 14 O O6 . DG A 1 1 ? 28.848 1.290 11.221 1.00 9.52 ? 1 DG A O6 1 ATOM 15 N N1 . DG A 1 1 ? 28.221 -0.499 9.957 1.00 9.35 ? 1 DG A N1 1 ATOM 16 C C2 . DG A 1 1 ? 28.408 -1.757 9.436 1.00 8.80 ? 1 DG A C2 1 ATOM 17 N N2 . DG A 1 1 ? 27.437 -2.216 8.633 1.00 10.35 ? 1 DG A N2 1 ATOM 18 N N3 . DG A 1 1 ? 29.474 -2.506 9.678 1.00 8.61 ? 1 DG A N3 1 ATOM 19 C C4 . DG A 1 1 ? 30.355 -1.873 10.494 1.00 8.73 ? 1 DG A C4 1 HETATM 20 C C2 . LR6 A 1 2 ? 29.583 0.822 7.180 1.00 8.15 ? 2 LR6 A C2 1 HETATM 21 C C4 . LR6 A 1 2 ? 30.907 2.029 8.723 1.00 8.62 ? 2 LR6 A C4 1 HETATM 22 C C5 . LR6 A 1 2 ? 31.979 1.030 8.588 1.00 8.17 ? 2 LR6 A C5 1 HETATM 23 C C6 . LR6 A 1 2 ? 31.747 -0.030 7.724 1.00 8.64 ? 2 LR6 A C6 1 HETATM 24 N N1 . LR6 A 1 2 ? 30.585 -0.137 7.043 1.00 7.41 ? 2 LR6 A N1 1 HETATM 25 N N3 . LR6 A 1 2 ? 29.779 1.854 8.014 1.00 8.66 ? 2 LR6 A N3 1 HETATM 26 C CD . LR6 A 1 2 ? 28.672 -2.098 3.518 1.00 9.83 ? 2 LR6 A CD 1 HETATM 27 C "C1'" . LR6 A 1 2 ? 30.275 -1.228 6.099 1.00 8.30 ? 2 LR6 A "C1'" 1 HETATM 28 C "C2'" . LR6 A 1 2 ? 30.482 -0.826 4.636 1.00 8.40 ? 2 LR6 A "C2'" 1 HETATM 29 C "C3'" . LR6 A 1 2 ? 31.974 -1.040 4.546 1.00 8.88 ? 2 LR6 A "C3'" 1 HETATM 30 C "C4'" . LR6 A 1 2 ? 31.897 -2.453 5.067 1.00 8.44 ? 2 LR6 A "C4'" 1 HETATM 31 C "C5'" . LR6 A 1 2 ? 33.212 -3.178 5.297 1.00 9.77 ? 2 LR6 A "C5'" 1 HETATM 32 C C5M . LR6 A 1 2 ? 33.258 1.179 9.368 1.00 10.58 ? 2 LR6 A C5M 1 HETATM 33 C "C6'" . LR6 A 1 2 ? 30.964 -3.052 4.045 1.00 9.36 ? 2 LR6 A "C6'" 1 HETATM 34 C "C7'" . LR6 A 1 2 ? 29.013 -3.788 1.680 1.00 13.70 ? 2 LR6 A "C7'" 1 HETATM 35 C "C8'" . LR6 A 1 2 ? 26.347 -1.151 3.880 1.00 11.96 ? 2 LR6 A "C8'" 1 HETATM 36 C "C9'" . LR6 A 1 2 ? 26.131 -0.738 2.424 1.00 14.74 ? 2 LR6 A "C9'" 1 HETATM 37 N "N2'" . LR6 A 1 2 ? 29.939 -2.004 3.952 1.00 9.03 ? 2 LR6 A "N2'" 1 HETATM 38 N "N3'" . LR6 A 1 2 ? 28.306 -2.897 2.592 1.00 12.05 ? 2 LR6 A "N3'" 1 HETATM 39 N "N4'" . LR6 A 1 2 ? 27.762 -1.363 4.183 1.00 10.25 ? 2 LR6 A "N4'" 1 HETATM 40 O O2 . LR6 A 1 2 ? 28.526 0.711 6.514 1.00 9.00 ? 2 LR6 A O2 1 HETATM 41 O "O3'" . LR6 A 1 2 ? 32.457 -1.055 3.210 1.00 9.77 ? 2 LR6 A "O3'" 1 HETATM 42 O O4 . LR6 A 1 2 ? 31.051 3.007 9.495 1.00 9.24 ? 2 LR6 A O4 1 HETATM 43 O "O4'" . LR6 A 1 2 ? 31.176 -2.320 6.291 1.00 8.55 ? 2 LR6 A "O4'" 1 HETATM 44 O "O5'" . LR6 A 1 2 ? 33.941 -2.358 6.200 1.00 9.54 ? 2 LR6 A "O5'" 1 HETATM 45 O OP1 . LR6 A 1 2 ? 36.104 -3.701 6.008 1.00 12.97 ? 2 LR6 A OP1 1 HETATM 46 O OP2 . LR6 A 1 2 ? 35.933 -1.621 7.462 1.00 13.63 ? 2 LR6 A OP2 1 HETATM 47 P P . LR6 A 1 2 ? 35.254 -2.857 6.932 1.00 10.60 ? 2 LR6 A P 1 HETATM 48 C "C10'" . LR6 A 1 2 ? 25.556 -2.411 4.214 1.00 15.63 ? 2 LR6 A "C10'" 1 HETATM 49 C "C11'" . LR6 A 1 2 ? 25.838 -0.031 4.777 1.00 13.79 ? 2 LR6 A "C11'" 1 ATOM 50 P P . DG A 1 3 ? 33.073 0.268 2.550 1.00 10.39 ? 3 DG A P 1 ATOM 51 O OP1 . DG A 1 3 ? 33.749 -0.198 1.317 1.00 13.44 ? 3 DG A OP1 1 ATOM 52 O OP2 . DG A 1 3 ? 33.811 1.018 3.586 1.00 12.00 ? 3 DG A OP2 1 ATOM 53 O "O5'" . DG A 1 3 ? 31.795 1.144 2.171 1.00 9.98 ? 3 DG A "O5'" 1 ATOM 54 C "C5'" . DG A 1 3 ? 30.821 0.655 1.249 1.00 10.03 ? 3 DG A "C5'" 1 ATOM 55 C "C4'" . DG A 1 3 ? 29.498 1.390 1.417 1.00 10.01 ? 3 DG A "C4'" 1 ATOM 56 O "O4'" . DG A 1 3 ? 29.110 1.368 2.810 1.00 10.67 ? 3 DG A "O4'" 1 ATOM 57 C "C3'" . DG A 1 3 ? 29.520 2.858 1.048 1.00 10.11 ? 3 DG A "C3'" 1 ATOM 58 O "O3'" . DG A 1 3 ? 29.236 2.989 -0.308 1.00 11.09 ? 3 DG A "O3'" 1 ATOM 59 C "C2'" . DG A 1 3 ? 28.382 3.415 1.889 1.00 10.99 ? 3 DG A "C2'" 1 ATOM 60 C "C1'" . DG A 1 3 ? 28.520 2.601 3.159 1.00 10.30 ? 3 DG A "C1'" 1 ATOM 61 N N9 . DG A 1 3 ? 29.319 3.245 4.213 1.00 9.69 ? 3 DG A N9 1 ATOM 62 C C8 . DG A 1 3 ? 30.551 2.864 4.703 1.00 9.89 ? 3 DG A C8 1 ATOM 63 N N7 . DG A 1 3 ? 30.988 3.635 5.668 1.00 8.94 ? 3 DG A N7 1 ATOM 64 C C5 . DG A 1 3 ? 29.981 4.577 5.824 1.00 8.36 ? 3 DG A C5 1 ATOM 65 C C6 . DG A 1 3 ? 29.868 5.668 6.723 1.00 8.23 ? 3 DG A C6 1 ATOM 66 O O6 . DG A 1 3 ? 30.659 6.033 7.606 1.00 8.93 ? 3 DG A O6 1 ATOM 67 N N1 . DG A 1 3 ? 28.677 6.374 6.524 1.00 8.20 ? 3 DG A N1 1 ATOM 68 C C2 . DG A 1 3 ? 27.714 6.056 5.588 1.00 8.67 ? 3 DG A C2 1 ATOM 69 N N2 . DG A 1 3 ? 26.633 6.854 5.537 1.00 9.16 ? 3 DG A N2 1 ATOM 70 N N3 . DG A 1 3 ? 27.808 5.037 4.757 1.00 9.64 ? 3 DG A N3 1 ATOM 71 C C4 . DG A 1 3 ? 28.956 4.344 4.928 1.00 9.88 ? 3 DG A C4 1 HETATM 72 N N1 . BRU A 1 4 ? 28.310 8.011 2.629 1.00 8.33 ? 4 BRU A N1 1 HETATM 73 C C2 . BRU A 1 4 ? 28.537 8.932 3.659 1.00 8.23 ? 4 BRU A C2 1 HETATM 74 N N3 . BRU A 1 4 ? 29.656 8.838 4.400 1.00 7.63 ? 4 BRU A N3 1 HETATM 75 C C4 . BRU A 1 4 ? 30.615 7.919 4.206 1.00 8.00 ? 4 BRU A C4 1 HETATM 76 C C5 . BRU A 1 4 ? 30.382 6.975 3.113 1.00 9.38 ? 4 BRU A C5 1 HETATM 77 C C6 . BRU A 1 4 ? 29.223 7.062 2.366 1.00 9.21 ? 4 BRU A C6 1 HETATM 78 O O2 . BRU A 1 4 ? 27.706 9.842 3.861 1.00 9.11 ? 4 BRU A O2 1 HETATM 79 O O4 . BRU A 1 4 ? 31.639 7.842 4.931 1.00 8.38 ? 4 BRU A O4 1 HETATM 80 BR BR . BRU A 1 4 ? 31.684 5.689 2.746 0.74 11.04 ? 4 BRU A BR 1 HETATM 81 C "C1'" . BRU A 1 4 ? 27.057 8.111 1.874 1.00 9.53 ? 4 BRU A "C1'" 1 HETATM 82 C "C2'" . BRU A 1 4 ? 27.177 9.052 0.701 1.00 8.99 ? 4 BRU A "C2'" 1 HETATM 83 C "C3'" . BRU A 1 4 ? 27.554 8.074 -0.382 1.00 9.37 ? 4 BRU A "C3'" 1 HETATM 84 C "C4'" . BRU A 1 4 ? 26.697 6.863 -0.052 1.00 9.71 ? 4 BRU A "C4'" 1 HETATM 85 O "O3'" . BRU A 1 4 ? 27.299 8.550 -1.696 1.00 10.18 ? 4 BRU A "O3'" 1 HETATM 86 O "O4'" . BRU A 1 4 ? 26.701 6.810 1.378 1.00 9.27 ? 4 BRU A "O4'" 1 HETATM 87 C "C5'" . BRU A 1 4 ? 27.226 5.573 -0.651 1.00 10.14 ? 4 BRU A "C5'" 1 HETATM 88 O "O5'" . BRU A 1 4 ? 28.605 5.453 -0.325 1.00 10.65 ? 4 BRU A "O5'" 1 HETATM 89 P P . BRU A 1 4 ? 29.528 4.370 -1.061 1.00 11.12 ? 4 BRU A P 1 HETATM 90 O OP1 . BRU A 1 4 ? 29.012 4.182 -2.465 1.00 14.16 ? 4 BRU A OP1 1 HETATM 91 O OP2 . BRU A 1 4 ? 30.974 4.741 -0.910 1.00 13.64 ? 4 BRU A OP2 1 ATOM 92 P P . DA A 1 5 ? 28.264 9.644 -2.348 1.00 11.00 ? 5 DA A P 1 ATOM 93 O OP1 . DA A 1 5 ? 27.934 9.695 -3.794 1.00 15.59 ? 5 DA A OP1 1 ATOM 94 O OP2 . DA A 1 5 ? 29.659 9.412 -1.934 1.00 14.35 ? 5 DA A OP2 1 ATOM 95 O "O5'" . DA A 1 5 ? 27.728 11.002 -1.680 1.00 9.82 ? 5 DA A "O5'" 1 ATOM 96 C "C5'" . DA A 1 5 ? 28.569 12.142 -1.548 1.00 9.62 ? 5 DA A "C5'" 1 ATOM 97 C "C4'" . DA A 1 5 ? 28.042 13.057 -0.458 1.00 9.27 ? 5 DA A "C4'" 1 ATOM 98 O "O4'" . DA A 1 5 ? 27.894 12.297 0.766 1.00 8.59 ? 5 DA A "O4'" 1 ATOM 99 C "C3'" . DA A 1 5 ? 28.949 14.225 -0.100 1.00 9.46 ? 5 DA A "C3'" 1 ATOM 100 O "O3'" . DA A 1 5 ? 28.622 15.354 -0.899 1.00 10.42 ? 5 DA A "O3'" 1 ATOM 101 C "C2'" . DA A 1 5 ? 28.622 14.462 1.364 1.00 8.92 ? 5 DA A "C2'" 1 ATOM 102 C "C1'" . DA A 1 5 ? 28.430 13.034 1.844 1.00 8.16 ? 5 DA A "C1'" 1 ATOM 103 N N9 . DA A 1 5 ? 29.658 12.360 2.290 1.00 8.09 ? 5 DA A N9 1 ATOM 104 C C8 . DA A 1 5 ? 30.284 11.292 1.689 1.00 8.11 ? 5 DA A C8 1 ATOM 105 N N7 . DA A 1 5 ? 31.324 10.842 2.349 1.00 7.98 ? 5 DA A N7 1 ATOM 106 C C5 . DA A 1 5 ? 31.382 11.663 3.464 1.00 7.04 ? 5 DA A C5 1 ATOM 107 C C6 . DA A 1 5 ? 32.253 11.698 4.560 1.00 7.19 ? 5 DA A C6 1 ATOM 108 N N6 . DA A 1 5 ? 33.271 10.846 4.697 1.00 7.65 ? 5 DA A N6 1 ATOM 109 N N1 . DA A 1 5 ? 32.036 12.633 5.516 1.00 7.15 ? 5 DA A N1 1 ATOM 110 C C2 . DA A 1 5 ? 31.011 13.482 5.361 1.00 7.66 ? 5 DA A C2 1 ATOM 111 N N3 . DA A 1 5 ? 30.117 13.538 4.371 1.00 7.23 ? 5 DA A N3 1 ATOM 112 C C4 . DA A 1 5 ? 30.360 12.598 3.447 1.00 7.25 ? 5 DA A C4 1 ATOM 113 P P . DC A 1 6 ? 29.786 16.276 -1.480 1.00 11.18 ? 6 DC A P 1 ATOM 114 O OP1 . DC A 1 6 ? 29.120 17.296 -2.323 1.00 13.33 ? 6 DC A OP1 1 ATOM 115 O OP2 . DC A 1 6 ? 30.836 15.404 -2.039 1.00 13.07 ? 6 DC A OP2 1 ATOM 116 O "O5'" . DC A 1 6 ? 30.418 16.984 -0.198 1.00 10.49 ? 6 DC A "O5'" 1 ATOM 117 C "C5'" . DC A 1 6 ? 29.684 17.957 0.493 1.00 11.47 ? 6 DC A "C5'" 1 ATOM 118 C "C4'" . DC A 1 6 ? 30.321 18.257 1.829 1.00 10.99 ? 6 DC A "C4'" 1 ATOM 119 O "O4'" . DC A 1 6 ? 30.317 17.059 2.648 1.00 9.94 ? 6 DC A "O4'" 1 ATOM 120 C "C3'" . DC A 1 6 ? 31.782 18.654 1.785 1.00 9.87 ? 6 DC A "C3'" 1 ATOM 121 O "O3'" . DC A 1 6 ? 31.916 20.017 1.429 1.00 10.82 ? 6 DC A "O3'" 1 ATOM 122 C "C2'" . DC A 1 6 ? 32.167 18.401 3.235 1.00 9.34 ? 6 DC A "C2'" 1 ATOM 123 C "C1'" . DC A 1 6 ? 31.474 17.065 3.464 1.00 8.78 ? 6 DC A "C1'" 1 ATOM 124 N N1 . DC A 1 6 ? 32.340 15.900 3.108 1.00 8.29 ? 6 DC A N1 1 ATOM 125 C C2 . DC A 1 6 ? 33.296 15.484 4.022 1.00 8.50 ? 6 DC A C2 1 ATOM 126 O O2 . DC A 1 6 ? 33.403 16.097 5.083 1.00 9.09 ? 6 DC A O2 1 ATOM 127 N N3 . DC A 1 6 ? 34.076 14.418 3.723 1.00 7.73 ? 6 DC A N3 1 ATOM 128 C C4 . DC A 1 6 ? 33.935 13.790 2.557 1.00 7.87 ? 6 DC A C4 1 ATOM 129 N N4 . DC A 1 6 ? 34.731 12.738 2.310 1.00 8.97 ? 6 DC A N4 1 ATOM 130 C C5 . DC A 1 6 ? 32.968 14.209 1.598 1.00 7.98 ? 6 DC A C5 1 ATOM 131 C C6 . DC A 1 6 ? 32.195 15.255 1.914 1.00 8.78 ? 6 DC A C6 1 ATOM 132 P P . DA A 1 7 ? 33.255 20.560 0.707 1.00 10.73 ? 7 DA A P 1 ATOM 133 O OP1 . DA A 1 7 ? 32.987 21.959 0.325 1.00 12.65 ? 7 DA A OP1 1 ATOM 134 O OP2 . DA A 1 7 ? 33.686 19.588 -0.321 1.00 13.18 ? 7 DA A OP2 1 ATOM 135 O "O5'" . DA A 1 7 ? 34.339 20.549 1.872 1.00 9.62 ? 7 DA A "O5'" 1 ATOM 136 C "C5'" . DA A 1 7 ? 34.197 21.419 2.983 1.00 9.89 ? 7 DA A "C5'" 1 ATOM 137 C "C4'" . DA A 1 7 ? 35.287 21.149 3.993 1.00 8.93 ? 7 DA A "C4'" 1 ATOM 138 O "O4'" . DA A 1 7 ? 35.169 19.788 4.465 1.00 8.83 ? 7 DA A "O4'" 1 ATOM 139 C "C3'" . DA A 1 7 ? 36.705 21.249 3.450 1.00 9.17 ? 7 DA A "C3'" 1 ATOM 140 O "O3'" . DA A 1 7 ? 37.152 22.582 3.528 1.00 9.65 ? 7 DA A "O3'" 1 ATOM 141 C "C2'" . DA A 1 7 ? 37.472 20.364 4.410 1.00 9.07 ? 7 DA A "C2'" 1 ATOM 142 C "C1'" . DA A 1 7 ? 36.462 19.253 4.665 1.00 8.20 ? 7 DA A "C1'" 1 ATOM 143 N N9 . DA A 1 7 ? 36.612 18.088 3.812 1.00 8.14 ? 7 DA A N9 1 ATOM 144 C C8 . DA A 1 7 ? 35.846 17.746 2.734 1.00 8.34 ? 7 DA A C8 1 ATOM 145 N N7 . DA A 1 7 ? 36.172 16.588 2.204 1.00 8.32 ? 7 DA A N7 1 ATOM 146 C C5 . DA A 1 7 ? 37.217 16.140 2.996 1.00 8.09 ? 7 DA A C5 1 ATOM 147 C C6 . DA A 1 7 ? 38.003 14.968 2.968 1.00 8.08 ? 7 DA A C6 1 ATOM 148 N N6 . DA A 1 7 ? 37.847 13.987 2.070 1.00 8.88 ? 7 DA A N6 1 ATOM 149 N N1 . DA A 1 7 ? 38.957 14.839 3.912 1.00 8.44 ? 7 DA A N1 1 ATOM 150 C C2 . DA A 1 7 ? 39.120 15.812 4.813 1.00 9.19 ? 7 DA A C2 1 ATOM 151 N N3 . DA A 1 7 ? 38.450 16.957 4.938 1.00 8.38 ? 7 DA A N3 1 ATOM 152 C C4 . DA A 1 7 ? 37.493 17.051 3.997 1.00 7.98 ? 7 DA A C4 1 ATOM 153 P P . DC A 1 8 ? 38.286 23.126 2.535 1.00 10.29 ? 8 DC A P 1 ATOM 154 O OP1 . DC A 1 8 ? 38.343 24.579 2.742 1.00 11.11 ? 8 DC A OP1 1 ATOM 155 O OP2 . DC A 1 8 ? 38.001 22.601 1.173 1.00 12.61 ? 8 DC A OP2 1 ATOM 156 O "O5'" . DC A 1 8 ? 39.642 22.452 3.040 1.00 11.13 ? 8 DC A "O5'" 1 ATOM 157 C "C5'" . DC A 1 8 ? 40.258 22.917 4.232 1.00 13.00 ? 8 DC A "C5'" 1 ATOM 158 C "C4'" . DC A 1 8 ? 41.532 22.145 4.524 1.00 12.86 ? 8 DC A "C4'" 1 ATOM 159 O "O4'" . DC A 1 8 ? 41.204 20.769 4.841 1.00 11.42 ? 8 DC A "O4'" 1 ATOM 160 C "C3'" . DC A 1 8 ? 42.510 22.053 3.365 1.00 13.94 ? 8 DC A "C3'" 1 ATOM 161 O "O3'" . DC A 1 8 ? 43.344 23.198 3.337 1.00 17.96 ? 8 DC A "O3'" 1 ATOM 162 C "C2'" . DC A 1 8 ? 43.298 20.799 3.720 1.00 15.17 ? 8 DC A "C2'" 1 ATOM 163 C "C1'" . DC A 1 8 ? 42.218 19.912 4.344 1.00 11.75 ? 8 DC A "C1'" 1 ATOM 164 N N1 . DC A 1 8 ? 41.614 18.939 3.389 1.00 10.50 ? 8 DC A N1 1 ATOM 165 C C2 . DC A 1 8 ? 42.163 17.667 3.293 1.00 9.71 ? 8 DC A C2 1 ATOM 166 O O2 . DC A 1 8 ? 43.137 17.391 4.003 1.00 10.80 ? 8 DC A O2 1 ATOM 167 N N3 . DC A 1 8 ? 41.612 16.772 2.436 1.00 9.54 ? 8 DC A N3 1 ATOM 168 C C4 . DC A 1 8 ? 40.567 17.121 1.683 1.00 9.55 ? 8 DC A C4 1 ATOM 169 N N4 . DC A 1 8 ? 40.064 16.209 0.848 1.00 10.10 ? 8 DC A N4 1 ATOM 170 C C5 . DC A 1 8 ? 39.996 18.428 1.755 1.00 9.92 ? 8 DC A C5 1 ATOM 171 C C6 . DC A 1 8 ? 40.545 19.295 2.617 1.00 10.33 ? 8 DC A C6 1 HETATM 172 O O . HOH B 2 . ? 36.637 22.604 -0.758 1.00 30.28 ? 101 HOH A O 1 HETATM 173 O O . HOH B 2 . ? 36.378 -3.734 3.553 1.00 34.03 ? 102 HOH A O 1 HETATM 174 O O . HOH B 2 . ? 26.418 11.404 -4.883 1.00 28.78 ? 103 HOH A O 1 HETATM 175 O O . HOH B 2 . ? 36.822 -0.607 9.624 1.00 20.27 ? 104 HOH A O 1 HETATM 176 O O . HOH B 2 . ? 32.082 13.158 -1.637 1.00 20.88 ? 105 HOH A O 1 HETATM 177 O O . HOH B 2 . ? 36.210 19.502 -1.071 1.00 25.43 ? 106 HOH A O 1 HETATM 178 O O . HOH B 2 . ? 34.050 6.801 5.219 1.00 20.67 ? 107 HOH A O 1 HETATM 179 O O . HOH B 2 . ? 33.299 3.793 -0.072 1.00 21.12 ? 108 HOH A O 1 HETATM 180 O O . HOH B 2 . ? 35.279 -1.561 14.086 1.00 21.75 ? 109 HOH A O 1 HETATM 181 O O . HOH B 2 . ? 39.462 26.095 0.873 1.00 27.87 ? 110 HOH A O 1 HETATM 182 O O . HOH B 2 . ? 31.674 10.716 -3.126 1.00 30.76 ? 111 HOH A O 1 HETATM 183 O O . HOH B 2 . ? 34.954 23.771 0.096 1.00 21.43 ? 112 HOH A O 1 HETATM 184 O O . HOH B 2 . ? 34.053 1.237 -0.946 1.00 25.55 ? 113 HOH A O 1 HETATM 185 O O . HOH B 2 . ? 33.203 17.183 -1.476 1.00 31.81 ? 114 HOH A O 1 HETATM 186 O O . HOH B 2 . ? 25.461 4.235 3.645 1.00 22.32 ? 115 HOH A O 1 HETATM 187 O O . HOH B 2 . ? 35.772 15.415 -0.219 1.00 20.66 ? 116 HOH A O 1 HETATM 188 O O . HOH B 2 . ? 38.466 -4.718 6.933 1.00 15.70 ? 117 HOH A O 1 HETATM 189 O O . HOH B 2 . ? 38.313 25.800 5.204 1.00 15.43 ? 118 HOH A O 1 HETATM 190 O O . HOH B 2 . ? 38.165 20.230 -0.208 1.00 34.09 ? 119 HOH A O 1 HETATM 191 O O . HOH B 2 . ? 33.529 3.722 6.713 1.00 21.73 ? 120 HOH A O 1 HETATM 192 O O . HOH B 2 . ? 34.777 0.919 6.177 1.00 20.05 ? 121 HOH A O 1 HETATM 193 O O . HOH B 2 . ? 33.005 5.303 8.892 1.00 16.05 ? 122 HOH A O 1 HETATM 194 O O . HOH B 2 . ? 31.456 7.583 -0.826 1.00 16.28 ? 123 HOH A O 1 HETATM 195 O O . HOH B 2 . ? 34.093 3.630 2.602 1.00 18.48 ? 124 HOH A O 1 HETATM 196 O O . HOH B 2 . ? 32.992 9.015 1.015 1.00 12.99 ? 125 HOH A O 1 HETATM 197 O O . HOH B 2 . ? 32.557 1.698 13.380 1.00 19.35 ? 126 HOH A O 1 HETATM 198 O O . HOH B 2 . ? 27.855 15.193 4.748 1.00 9.13 ? 127 HOH A O 1 HETATM 199 O O . HOH B 2 . ? 39.995 23.627 -0.573 1.00 23.83 ? 128 HOH A O 1 HETATM 200 O O . HOH B 2 . ? 30.180 3.205 12.854 1.00 15.61 ? 129 HOH A O 1 HETATM 201 O O . HOH B 2 . ? 39.407 18.973 6.736 1.00 21.07 ? 130 HOH A O 1 HETATM 202 O O . HOH B 2 . ? 32.492 -2.544 0.234 1.00 25.63 ? 131 HOH A O 1 HETATM 203 O O . HOH B 2 . ? 45.873 17.895 4.790 1.00 16.85 ? 132 HOH A O 1 HETATM 204 O O . HOH B 2 . ? 42.110 24.658 1.155 1.00 24.14 ? 133 HOH A O 1 HETATM 205 O O . HOH B 2 . ? 34.354 11.113 -0.100 1.00 22.99 ? 134 HOH A O 1 HETATM 206 O O . HOH B 2 . ? 26.626 18.509 -1.364 1.00 23.58 ? 135 HOH A O 1 HETATM 207 O O . HOH B 2 . ? 25.929 -4.347 1.641 1.00 17.15 ? 136 HOH A O 1 HETATM 208 O O . HOH B 2 . ? 30.915 23.082 2.111 1.00 22.59 ? 137 HOH A O 1 HETATM 209 O O . HOH B 2 . ? 34.514 8.646 3.047 1.00 17.90 ? 138 HOH A O 1 HETATM 210 O O . HOH B 2 . ? 38.513 -0.900 6.035 1.00 34.63 ? 139 HOH A O 1 HETATM 211 O O . HOH B 2 . ? 30.238 14.387 -4.867 1.00 33.35 ? 140 HOH A O 1 HETATM 212 O O . HOH B 2 . ? 32.593 22.830 -2.655 1.00 30.71 ? 141 HOH A O 1 HETATM 213 O O . HOH B 2 . ? 32.305 5.132 11.484 1.00 27.64 ? 142 HOH A O 1 HETATM 214 O O . HOH B 2 . ? 26.875 17.439 3.440 1.00 14.16 ? 143 HOH A O 1 HETATM 215 O O . HOH B 2 . ? 35.176 4.558 5.014 1.00 31.94 ? 144 HOH A O 1 HETATM 216 O O . HOH B 2 . ? 40.017 -2.443 7.159 1.00 33.66 ? 145 HOH A O 1 HETATM 217 O O . HOH B 2 . ? 34.818 -4.862 2.205 1.00 32.63 ? 146 HOH A O 1 HETATM 218 O O . HOH B 2 . ? 31.569 25.815 1.430 1.00 39.14 ? 147 HOH A O 1 HETATM 219 O O . HOH B 2 . ? 36.608 2.166 10.561 1.00 29.80 ? 148 HOH A O 1 HETATM 220 O O . HOH B 2 . ? 44.150 26.012 0.102 1.00 25.82 ? 149 HOH A O 1 HETATM 221 O O . HOH B 2 . ? 34.997 2.421 12.696 1.00 37.11 ? 150 HOH A O 1 # loop_ _atom_site_anisotrop.id _atom_site_anisotrop.type_symbol _atom_site_anisotrop.pdbx_label_atom_id _atom_site_anisotrop.pdbx_label_alt_id _atom_site_anisotrop.pdbx_label_comp_id _atom_site_anisotrop.pdbx_label_asym_id _atom_site_anisotrop.pdbx_label_seq_id _atom_site_anisotrop.pdbx_PDB_ins_code _atom_site_anisotrop.U[1][1] _atom_site_anisotrop.U[2][2] _atom_site_anisotrop.U[3][3] _atom_site_anisotrop.U[1][2] _atom_site_anisotrop.U[1][3] _atom_site_anisotrop.U[2][3] _atom_site_anisotrop.pdbx_auth_seq_id _atom_site_anisotrop.pdbx_auth_comp_id _atom_site_anisotrop.pdbx_auth_asym_id _atom_site_anisotrop.pdbx_auth_atom_id 1 O "O5'" . DG A 1 ? 0.1574 0.1194 0.1677 0.0159 -0.0401 -0.0007 1 DG A "O5'" 2 C "C5'" . DG A 1 ? 0.1514 0.1082 0.1723 0.0193 -0.0461 -0.0018 1 DG A "C5'" 3 C "C4'" . DG A 1 ? 0.1449 0.0967 0.1617 0.0191 -0.0450 -0.0031 1 DG A "C4'" 4 O "O4'" . DG A 1 ? 0.1476 0.0957 0.1535 0.0131 -0.0460 0.0033 1 DG A "O4'" 5 C "C3'" . DG A 1 ? 0.1273 0.0835 0.1399 0.0207 -0.0370 -0.0089 1 DG A "C3'" 6 O "O3'" . DG A 1 ? 0.1332 0.0891 0.1537 0.0257 -0.0352 -0.0163 1 DG A "O3'" 7 C "C2'" . DG A 1 ? 0.1326 0.0836 0.1387 0.0174 -0.0384 -0.0061 1 DG A "C2'" 8 C "C1'" . DG A 1 ? 0.1437 0.0928 0.1452 0.0122 -0.0411 0.0016 1 DG A "C1'" 9 N N9 . DG A 1 ? 0.1389 0.0936 0.1331 0.0090 -0.0346 0.0032 1 DG A N9 10 C C8 . DG A 1 ? 0.1433 0.1015 0.1333 0.0073 -0.0322 0.0045 1 DG A C8 11 N N7 . DG A 1 ? 0.1476 0.1096 0.1329 0.0048 -0.0256 0.0048 1 DG A N7 12 C C5 . DG A 1 ? 0.1409 0.1026 0.1288 0.0050 -0.0243 0.0044 1 DG A C5 13 C C6 . DG A 1 ? 0.1209 0.0859 0.1098 0.0033 -0.0190 0.0049 1 DG A C6 14 O O6 . DG A 1 ? 0.1350 0.1038 0.1229 0.0016 -0.0131 0.0050 1 DG A O6 15 N N1 . DG A 1 ? 0.1329 0.0960 0.1263 0.0035 -0.0217 0.0051 1 DG A N1 16 C C2 . DG A 1 ? 0.1274 0.0851 0.1220 0.0051 -0.0279 0.0041 1 DG A C2 17 N N2 . DG A 1 ? 0.1467 0.1022 0.1445 0.0043 -0.0307 0.0042 1 DG A N2 18 N N3 . DG A 1 ? 0.1263 0.0804 0.1207 0.0073 -0.0319 0.0028 1 DG A N3 19 C C4 . DG A 1 ? 0.1277 0.0845 0.1195 0.0072 -0.0300 0.0035 1 DG A C4 20 C C2 . LR6 A 2 ? 0.1168 0.0859 0.1069 0.0106 -0.0195 -0.0041 2 LR6 A C2 21 C C4 . LR6 A 2 ? 0.1209 0.0958 0.1107 0.0106 -0.0142 -0.0035 2 LR6 A C4 22 C C5 . LR6 A 2 ? 0.1153 0.0881 0.1069 0.0134 -0.0178 -0.0061 2 LR6 A C5 23 C C6 . LR6 A 2 ? 0.1225 0.0909 0.1148 0.0150 -0.0209 -0.0085 2 LR6 A C6 24 N N1 . LR6 A 2 ? 0.1086 0.0747 0.0985 0.0133 -0.0219 -0.0076 2 LR6 A N1 25 N N3 . LR6 A 2 ? 0.1216 0.0951 0.1124 0.0097 -0.0152 -0.0025 2 LR6 A N3 26 C CD . LR6 A 2 ? 0.1498 0.0977 0.1261 0.0103 -0.0336 -0.0148 2 LR6 A CD 27 C "C1'" . LR6 A 2 ? 0.1223 0.0822 0.1109 0.0140 -0.0259 -0.0106 2 LR6 A "C1'" 28 C "C2'" . LR6 A 2 ? 0.1260 0.0856 0.1074 0.0144 -0.0237 -0.0152 2 LR6 A "C2'" 29 C "C3'" . LR6 A 2 ? 0.1308 0.0921 0.1145 0.0182 -0.0200 -0.0207 2 LR6 A "C3'" 30 C "C4'" . LR6 A 2 ? 0.1252 0.0802 0.1151 0.0195 -0.0256 -0.0211 2 LR6 A "C4'" 31 C "C5'" . LR6 A 2 ? 0.1391 0.0935 0.1384 0.0238 -0.0253 -0.0255 2 LR6 A "C5'" 32 C C5M . LR6 A 2 ? 0.1443 0.1191 0.1385 0.0142 -0.0187 -0.0063 2 LR6 A C5M 33 C "C6'" . LR6 A 2 ? 0.1417 0.0894 0.1245 0.0175 -0.0288 -0.0232 2 LR6 A "C6'" 34 C "C7'" . LR6 A 2 ? 0.2086 0.1408 0.1712 0.0104 -0.0377 -0.0268 2 LR6 A "C7'" 35 C "C8'" . LR6 A 2 ? 0.1720 0.1242 0.1582 0.0043 -0.0383 -0.0034 2 LR6 A "C8'" 36 C "C9'" . LR6 A 2 ? 0.2116 0.1604 0.1881 0.0022 -0.0418 -0.0047 2 LR6 A "C9'" 37 N "N2'" . LR6 A 2 ? 0.1377 0.0890 0.1163 0.0138 -0.0288 -0.0178 2 LR6 A "N2'" 38 N "N3'" . LR6 A 2 ? 0.1825 0.1225 0.1528 0.0089 -0.0381 -0.0182 2 LR6 A "N3'" 39 N "N4'" . LR6 A 2 ? 0.1514 0.1042 0.1338 0.0080 -0.0337 -0.0082 2 LR6 A "N4'" 40 O O2 . LR6 A 2 ? 0.1279 0.0952 0.1188 0.0090 -0.0219 -0.0027 2 LR6 A O2 41 O "O3'" . LR6 A 2 ? 0.1451 0.1046 0.1215 0.0187 -0.0164 -0.0271 2 LR6 A "O3'" 42 O O4 . LR6 A 2 ? 0.1282 0.1058 0.1170 0.0089 -0.0106 -0.0024 2 LR6 A O4 43 O "O4'" . LR6 A 2 ? 0.1254 0.0813 0.1180 0.0169 -0.0284 -0.0138 2 LR6 A "O4'" 44 O "O5'" . LR6 A 2 ? 0.1322 0.0938 0.1365 0.0242 -0.0236 -0.0222 2 LR6 A "O5'" 45 O OP1 . LR6 A 2 ? 0.1683 0.1290 0.1956 0.0323 -0.0237 -0.0313 2 LR6 A OP1 46 O OP2 . LR6 A 2 ? 0.1759 0.1470 0.1951 0.0267 -0.0230 -0.0205 2 LR6 A OP2 47 P P . LR6 A 2 ? 0.1406 0.1035 0.1587 0.0276 -0.0261 -0.0228 2 LR6 A P 48 C "C10'" . LR6 A 2 ? 0.2184 0.1652 0.2103 0.0025 -0.0439 -0.0018 2 LR6 A "C10'" 49 C "C11'" . LR6 A 2 ? 0.1894 0.1494 0.1850 0.0035 -0.0338 0.0017 2 LR6 A "C11'" 50 P P . DG A 3 ? 0.1528 0.1185 0.1233 0.0175 -0.0095 -0.0279 3 DG A P 51 O OP1 . DG A 3 ? 0.1953 0.1572 0.1581 0.0179 -0.0046 -0.0360 3 DG A OP1 52 O OP2 . DG A 3 ? 0.1675 0.1410 0.1474 0.0191 -0.0070 -0.0250 3 DG A OP2 53 O "O5'" . DG A 3 ? 0.1506 0.1154 0.1131 0.0131 -0.0127 -0.0219 3 DG A "O5'" 54 C "C5'" . DG A 3 ? 0.1569 0.1140 0.1100 0.0099 -0.0179 -0.0220 3 DG A "C5'" 55 C "C4'" . DG A 3 ? 0.1555 0.1136 0.1113 0.0067 -0.0232 -0.0142 3 DG A "C4'" 56 O "O4'" . DG A 3 ? 0.1580 0.1203 0.1272 0.0083 -0.0235 -0.0103 3 DG A "O4'" 57 C "C3'" . DG A 3 ? 0.1562 0.1185 0.1093 0.0046 -0.0210 -0.0102 3 DG A "C3'" 58 O "O3'" . DG A 3 ? 0.1756 0.1317 0.1141 0.0003 -0.0244 -0.0102 3 DG A "O3'" 59 C "C2'" . DG A 3 ? 0.1619 0.1275 0.1281 0.0040 -0.0243 -0.0035 3 DG A "C2'" 60 C "C1'" . DG A 3 ? 0.1497 0.1170 0.1247 0.0068 -0.0226 -0.0048 3 DG A "C1'" 61 N N9 . DG A 3 ? 0.1382 0.1115 0.1184 0.0089 -0.0167 -0.0050 3 DG A N9 62 C C8 . DG A 3 ? 0.1403 0.1151 0.1203 0.0115 -0.0135 -0.0087 3 DG A C8 63 N N7 . DG A 3 ? 0.1253 0.1047 0.1096 0.0119 -0.0102 -0.0073 3 DG A N7 64 C C5 . DG A 3 ? 0.1164 0.0971 0.1040 0.0098 -0.0096 -0.0034 3 DG A C5 65 C C6 . DG A 3 ? 0.1120 0.0961 0.1045 0.0090 -0.0057 -0.0016 3 DG A C6 66 O O6 . DG A 3 ? 0.1204 0.1064 0.1126 0.0092 -0.0028 -0.0029 3 DG A O6 67 N N1 . DG A 3 ? 0.1094 0.0938 0.1085 0.0075 -0.0060 0.0016 3 DG A N1 68 C C2 . DG A 3 ? 0.1154 0.0975 0.1164 0.0064 -0.0111 0.0041 3 DG A C2 69 N N2 . DG A 3 ? 0.1176 0.1008 0.1297 0.0052 -0.0118 0.0077 3 DG A N2 70 N N3 . DG A 3 ? 0.1315 0.1097 0.1251 0.0063 -0.0157 0.0027 3 DG A N3 71 C C4 . DG A 3 ? 0.1369 0.1145 0.1239 0.0082 -0.0139 -0.0015 3 DG A C4 72 N N1 . BRU A 4 ? 0.1170 0.0962 0.1035 0.0025 -0.0163 0.0085 4 BRU A N1 73 C C2 . BRU A 4 ? 0.1110 0.0945 0.1071 0.0040 -0.0109 0.0085 4 BRU A C2 74 N N3 . BRU A 4 ? 0.1034 0.0898 0.0967 0.0057 -0.0054 0.0043 4 BRU A N3 75 C C4 . BRU A 4 ? 0.1109 0.0972 0.0959 0.0069 -0.0044 0.0004 4 BRU A C4 76 C C5 . BRU A 4 ? 0.1327 0.1146 0.1089 0.0060 -0.0084 -0.0006 4 BRU A C5 77 C C6 . BRU A 4 ? 0.1322 0.1102 0.1077 0.0034 -0.0144 0.0035 4 BRU A C6 78 O O2 . BRU A 4 ? 0.1180 0.1021 0.1262 0.0035 -0.0118 0.0121 4 BRU A O2 79 O O4 . BRU A 4 ? 0.1145 0.1037 0.1002 0.0084 -0.0008 -0.0026 4 BRU A O4 80 BR BR . BRU A 4 ? 0.1567 0.1377 0.1249 0.0082 -0.0055 -0.0078 4 BRU A BR 81 C "C1'" . BRU A 4 ? 0.1321 0.1076 0.1224 -0.0002 -0.0245 0.0138 4 BRU A "C1'" 82 C "C2'" . BRU A 4 ? 0.1291 0.1013 0.1114 -0.0039 -0.0285 0.0182 4 BRU A "C2'" 83 C "C3'" . BRU A 4 ? 0.1427 0.1089 0.1047 -0.0066 -0.0313 0.0153 4 BRU A "C3'" 84 C "C4'" . BRU A 4 ? 0.1457 0.1101 0.1133 -0.0055 -0.0356 0.0140 4 BRU A "C4'" 85 O "O3'" . BRU A 4 ? 0.1594 0.1190 0.1085 -0.0123 -0.0383 0.0203 4 BRU A "O3'" 86 O "O4'" . BRU A 4 ? 0.1328 0.1037 0.1156 -0.0013 -0.0295 0.0122 4 BRU A "O4'" 87 C "C5'" . BRU A 4 ? 0.1584 0.1174 0.1094 -0.0062 -0.0355 0.0077 4 BRU A "C5'" 88 O "O5'" . BRU A 4 ? 0.1654 0.1278 0.1115 -0.0031 -0.0260 0.0015 4 BRU A "O5'" 89 P P . BRU A 4 ? 0.1783 0.1358 0.1084 -0.0032 -0.0224 -0.0067 4 BRU A P 90 O OP1 . BRU A 4 ? 0.2262 0.1740 0.1377 -0.0092 -0.0288 -0.0060 4 BRU A OP1 91 O OP2 . BRU A 4 ? 0.2086 0.1717 0.1379 -0.0009 -0.0124 -0.0111 4 BRU A OP2 92 P P . DA A 5 ? 0.1738 0.1330 0.1112 -0.0155 -0.0343 0.0222 5 DA A P 93 O OP1 . DA A 5 ? 0.2419 0.1913 0.1592 -0.0230 -0.0428 0.0267 5 DA A OP1 94 O OP2 . DA A 5 ? 0.2160 0.1803 0.1490 -0.0125 -0.0226 0.0147 5 DA A OP2 95 O "O5'" . DA A 5 ? 0.1503 0.1135 0.1093 -0.0140 -0.0361 0.0288 5 DA A "O5'" 96 C "C5'" . DA A 5 ? 0.1464 0.1124 0.1066 -0.0143 -0.0304 0.0300 5 DA A "C5'" 97 C "C4'" . DA A 5 ? 0.1323 0.1028 0.1172 -0.0105 -0.0294 0.0320 5 DA A "C4'" 98 O "O4'" . DA A 5 ? 0.1186 0.0942 0.1136 -0.0054 -0.0240 0.0259 5 DA A "O4'" 99 C "C3'" . DA A 5 ? 0.1326 0.1059 0.1210 -0.0103 -0.0232 0.0321 5 DA A "C3'" 100 O "O3'" . DA A 5 ? 0.1459 0.1142 0.1359 -0.0146 -0.0301 0.0406 5 DA A "O3'" 101 C "C2'" . DA A 5 ? 0.1174 0.0956 0.1258 -0.0052 -0.0182 0.0283 5 DA A "C2'" 102 C "C1'" . DA A 5 ? 0.1084 0.0885 0.1133 -0.0026 -0.0165 0.0230 5 DA A "C1'" 103 N N9 . DA A 5 ? 0.1097 0.0932 0.1045 -0.0010 -0.0095 0.0164 5 DA A N9 104 C C8 . DA A 5 ? 0.1151 0.0979 0.0953 -0.0015 -0.0089 0.0131 5 DA A C8 105 N N7 . DA A 5 ? 0.1125 0.0992 0.0915 0.0009 -0.0029 0.0076 5 DA A N7 106 C C5 . DA A 5 ? 0.0958 0.0854 0.0861 0.0024 0.0000 0.0075 5 DA A C5 107 C C6 . DA A 5 ? 0.0955 0.0887 0.0890 0.0041 0.0046 0.0036 5 DA A C6 108 N N6 . DA A 5 ? 0.1019 0.0976 0.0912 0.0055 0.0066 -0.0004 5 DA A N6 109 N N1 . DA A 5 ? 0.0920 0.0854 0.0941 0.0042 0.0066 0.0037 5 DA A N1 110 C C2 . DA A 5 ? 0.0965 0.0875 0.1069 0.0034 0.0049 0.0072 5 DA A C2 111 N N3 . DA A 5 ? 0.0914 0.0798 0.1034 0.0023 -0.0002 0.0120 5 DA A N3 112 C C4 . DA A 5 ? 0.0960 0.0835 0.0958 0.0014 -0.0030 0.0122 5 DA A C4 113 P P . DC A 6 ? 0.1599 0.1269 0.1381 -0.0189 -0.0265 0.0430 6 DC A P 114 O OP1 . DC A 6 ? 0.1886 0.1483 0.1695 -0.0239 -0.0369 0.0537 6 DC A OP1 115 O OP2 . DC A 6 ? 0.1907 0.1588 0.1469 -0.0210 -0.0202 0.0378 6 DC A OP2 116 O "O5'" . DC A 6 ? 0.1439 0.1169 0.1378 -0.0145 -0.0180 0.0383 6 DC A "O5'" 117 C "C5'" . DC A 6 ? 0.1493 0.1215 0.1650 -0.0122 -0.0202 0.0406 6 DC A "C5'" 118 C "C4'" . DC A 6 ? 0.1387 0.1156 0.1633 -0.0083 -0.0111 0.0332 6 DC A "C4'" 119 O "O4'" . DC A 6 ? 0.1247 0.1061 0.1469 -0.0046 -0.0066 0.0260 6 DC A "O4'" 120 C "C3'" . DC A 6 ? 0.1267 0.1061 0.1421 -0.0106 -0.0055 0.0314 6 DC A "C3'" 121 O "O3'" . DC A 6 ? 0.1381 0.1135 0.1597 -0.0138 -0.0080 0.0373 6 DC A "O3'" 122 C "C2'" . DC A 6 ? 0.1164 0.1002 0.1383 -0.0065 0.0012 0.0231 6 DC A "C2'" 123 C "C1'" . DC A 6 ? 0.1099 0.0951 0.1288 -0.0036 0.0005 0.0201 6 DC A "C1'" 124 N N1 . DC A 6 ? 0.1073 0.0960 0.1115 -0.0037 0.0028 0.0169 6 DC A N1 125 C C2 . DC A 6 ? 0.1088 0.1018 0.1123 -0.0019 0.0078 0.0110 6 DC A C2 126 O O2 . DC A 6 ? 0.1136 0.1067 0.1249 -0.0011 0.0100 0.0086 6 DC A O2 127 N N3 . DC A 6 ? 0.1009 0.0970 0.0957 -0.0013 0.0097 0.0078 6 DC A N3 128 C C4 . DC A 6 ? 0.1067 0.1011 0.0912 -0.0027 0.0081 0.0092 6 DC A C4 129 N N4 . DC A 6 ? 0.1219 0.1190 0.1000 -0.0017 0.0113 0.0046 6 DC A N4 130 C C5 . DC A 6 ? 0.1111 0.1001 0.0919 -0.0057 0.0027 0.0152 6 DC A C5 131 C C6 . DC A 6 ? 0.1182 0.1049 0.1103 -0.0060 -0.0005 0.0195 6 DC A C6 132 P P . DA A 7 ? 0.1407 0.1167 0.1504 -0.0193 -0.0051 0.0401 7 DA A P 133 O OP1 . DA A 7 ? 0.1641 0.1337 0.1828 -0.0228 -0.0104 0.0481 7 DA A OP1 134 O OP2 . DA A 7 ? 0.1781 0.1554 0.1673 -0.0225 -0.0038 0.0405 7 DA A OP2 135 O "O5'" . DA A 7 ? 0.1229 0.1053 0.1374 -0.0167 0.0030 0.0319 7 DA A "O5'" 136 C "C5'" . DA A 7 ? 0.1217 0.1024 0.1515 -0.0145 0.0039 0.0290 7 DA A "C5'" 137 C "C4'" . DA A 7 ? 0.1079 0.0940 0.1372 -0.0132 0.0098 0.0216 7 DA A "C4'" 138 O "O4'" . DA A 7 ? 0.1073 0.0974 0.1307 -0.0097 0.0115 0.0163 7 DA A "O4'" 139 C "C3'" . DA A 7 ? 0.1114 0.1024 0.1345 -0.0171 0.0130 0.0228 7 DA A "C3'" 140 O "O3'" . DA A 7 ? 0.1157 0.1038 0.1469 -0.0206 0.0125 0.0257 7 DA A "O3'" 141 C "C2'" . DA A 7 ? 0.1082 0.1054 0.1310 -0.0143 0.0165 0.0153 7 DA A "C2'" 142 C "C1'" . DA A 7 ? 0.0989 0.0952 0.1176 -0.0101 0.0151 0.0127 7 DA A "C1'" 143 N N9 . DA A 7 ? 0.1003 0.1000 0.1090 -0.0097 0.0160 0.0128 7 DA A N9 144 C C8 . DA A 7 ? 0.1066 0.1031 0.1071 -0.0107 0.0135 0.0167 7 DA A C8 145 N N7 . DA A 7 ? 0.1086 0.1078 0.0997 -0.0101 0.0155 0.0141 7 DA A N7 146 C C5 . DA A 7 ? 0.1019 0.1072 0.0982 -0.0079 0.0194 0.0086 7 DA A C5 147 C C6 . DA A 7 ? 0.1007 0.1110 0.0953 -0.0058 0.0228 0.0036 7 DA A C6 148 N N6 . DA A 7 ? 0.1144 0.1238 0.0992 -0.0055 0.0241 0.0020 7 DA A N6 149 N N1 . DA A 7 ? 0.1003 0.1158 0.1046 -0.0041 0.0239 0.0001 7 DA A N1 150 C C2 . DA A 7 ? 0.1075 0.1224 0.1191 -0.0052 0.0221 0.0009 7 DA A C2 151 N N3 . DA A 7 ? 0.0987 0.1085 0.1113 -0.0072 0.0203 0.0042 7 DA A N3 152 C C4 . DA A 7 ? 0.0972 0.1027 0.1033 -0.0080 0.0190 0.0082 7 DA A C4 153 P P . DC A 8 ? 0.1244 0.1152 0.1514 -0.0269 0.0148 0.0311 8 DC A P 154 O OP1 . DC A 8 ? 0.1331 0.1180 0.1710 -0.0300 0.0121 0.0347 8 DC A OP1 155 O OP2 . DC A 8 ? 0.1589 0.1489 0.1715 -0.0298 0.0145 0.0364 8 DC A OP2 156 O "O5'" . DC A 8 ? 0.1316 0.1321 0.1594 -0.0264 0.0205 0.0249 8 DC A "O5'" 157 C "C5'" . DC A 8 ? 0.1513 0.1528 0.1898 -0.0258 0.0201 0.0204 8 DC A "C5'" 158 C "C4'" . DC A 8 ? 0.1454 0.1568 0.1865 -0.0256 0.0237 0.0162 8 DC A "C4'" 159 O "O4'" . DC A 8 ? 0.1281 0.1421 0.1639 -0.0205 0.0238 0.0115 8 DC A "O4'" 160 C "C3'" . DC A 8 ? 0.1570 0.1756 0.1970 -0.0297 0.0296 0.0195 8 DC A "C3'" 161 O "O3'" . DC A 8 ? 0.2045 0.2240 0.2539 -0.0351 0.0303 0.0228 8 DC A "O3'" 162 C "C2'" . DC A 8 ? 0.1682 0.1959 0.2121 -0.0262 0.0326 0.0135 8 DC A "C2'" 163 C "C1'" . DC A 8 ? 0.1288 0.1518 0.1657 -0.0205 0.0284 0.0098 8 DC A "C1'" 164 N N1 . DC A 8 ? 0.1171 0.1398 0.1422 -0.0187 0.0310 0.0100 8 DC A N1 165 C C2 . DC A 8 ? 0.1047 0.1337 0.1305 -0.0156 0.0343 0.0052 8 DC A C2 166 O O2 . DC A 8 ? 0.1123 0.1476 0.1505 -0.0144 0.0344 0.0020 8 DC A O2 167 N N3 . DC A 8 ? 0.1071 0.1343 0.1211 -0.0144 0.0365 0.0044 8 DC A N3 168 C C4 . DC A 8 ? 0.1139 0.1337 0.1153 -0.0166 0.0343 0.0089 8 DC A C4 169 N N4 . DC A 8 ? 0.1260 0.1432 0.1146 -0.0162 0.0354 0.0077 8 DC A N4 170 C C5 . DC A 8 ? 0.1201 0.1341 0.1227 -0.0196 0.0300 0.0148 8 DC A C5 171 C C6 . DC A 8 ? 0.1207 0.1363 0.1355 -0.0203 0.0291 0.0147 8 DC A C6 172 O O . HOH B . ? 0.3762 0.4337 0.3408 -0.0749 0.1050 -0.0270 101 HOH A O 173 O O . HOH B . ? 0.4258 0.4318 0.4355 0.1314 0.0217 0.1705 102 HOH A O 174 O O . HOH B . ? 0.3905 0.3812 0.3217 -0.0866 -0.1058 0.1134 103 HOH A O 175 O O . HOH B . ? 0.1812 0.3419 0.2471 -0.0384 -0.0466 0.0638 104 HOH A O 176 O O . HOH B . ? 0.1991 0.4016 0.1925 -0.0115 -0.0209 0.0142 105 HOH A O 177 O O . HOH B . ? 0.3281 0.2938 0.3444 -0.1011 0.0926 0.0441 106 HOH A O 178 O O . HOH B . ? 0.1744 0.3147 0.2961 0.0846 -0.0757 -0.1101 107 HOH A O 179 O O . HOH B . ? 0.2037 0.2860 0.3128 0.0299 -0.0080 0.0260 108 HOH A O 180 O O . HOH B . ? 0.3521 0.1717 0.3025 0.0348 0.0863 -0.0362 109 HOH A O 181 O O . HOH B . ? 0.3848 0.3539 0.3201 -0.1134 0.0008 0.1716 110 HOH A O 182 O O . HOH B . ? 0.3496 0.4345 0.3847 -0.0274 -0.0323 0.0222 111 HOH A O 183 O O . HOH B . ? 0.3244 0.2541 0.2357 -0.0840 -0.0303 0.0316 112 HOH A O 184 O O . HOH B . ? 0.3833 0.3550 0.2323 -0.0327 0.0580 0.0497 113 HOH A O 185 O O . HOH B . ? 0.3931 0.3378 0.4776 -0.0930 0.0039 -0.0339 114 HOH A O 186 O O . HOH B . ? 0.2625 0.3707 0.2147 0.0573 -0.0321 -0.0384 115 HOH A O 187 O O . HOH B . ? 0.1827 0.4079 0.1944 -0.1237 0.0363 -0.0070 116 HOH A O 188 O O . HOH B . ? 0.1096 0.2810 0.2061 0.0211 0.0202 0.0653 117 HOH A O 189 O O . HOH B . ? 0.2979 0.0942 0.1940 -0.0058 0.1140 -0.0097 118 HOH A O 190 O O . HOH B . ? 0.4599 0.4375 0.3980 0.0450 0.0283 -0.0362 119 HOH A O 191 O O . HOH B . ? 0.2089 0.4149 0.2017 0.0252 0.0240 0.0752 120 HOH A O 192 O O . HOH B . ? 0.3255 0.1958 0.2406 -0.0408 0.0343 -0.0369 121 HOH A O 193 O O . HOH B . ? 0.2160 0.1314 0.2626 0.0245 0.0203 -0.0146 122 HOH A O 194 O O . HOH B . ? 0.2315 0.1574 0.2298 -0.0005 -0.0788 -0.0351 123 HOH A O 195 O O . HOH B . ? 0.2660 0.1790 0.2573 -0.0160 -0.0358 -0.0463 124 HOH A O 196 O O . HOH B . ? 0.1360 0.1746 0.1830 0.0145 0.0060 -0.0245 125 HOH A O 197 O O . HOH B . ? 0.2859 0.1899 0.2592 -0.0692 0.0055 -0.0977 126 HOH A O 198 O O . HOH B . ? 0.1042 0.1184 0.1243 0.0041 -0.0076 0.0043 127 HOH A O 199 O O . HOH B . ? 0.3024 0.2802 0.3227 -0.1580 0.0810 -0.0052 128 HOH A O 200 O O . HOH B . ? 0.2950 0.1181 0.1802 -0.0218 -0.0834 -0.0199 129 HOH A O 201 O O . HOH B . ? 0.3466 0.2141 0.2398 0.1449 -0.0642 -0.0612 130 HOH A O 202 O O . HOH B . ? 0.3600 0.3021 0.3118 0.0598 -0.0293 -0.0315 131 HOH A O 203 O O . HOH B . ? 0.1418 0.2394 0.2591 0.0449 -0.0488 -0.0446 132 HOH A O 204 O O . HOH B . ? 0.3610 0.2680 0.2884 -0.0588 0.0726 -0.0233 133 HOH A O 205 O O . HOH B . ? 0.3708 0.3333 0.1695 -0.0701 0.0904 -0.0607 134 HOH A O 206 O O . HOH B . ? 0.3637 0.2411 0.2909 0.1110 -0.0929 0.0668 135 HOH A O 207 O O . HOH B . ? 0.2230 0.2022 0.2263 -0.0422 -0.0749 -0.0620 136 HOH A O 208 O O . HOH B . ? 0.3122 0.2039 0.3423 0.0444 -0.0680 0.0505 137 HOH A O 209 O O . HOH B . ? 0.1076 0.2598 0.3128 0.0089 -0.0086 -0.1016 138 HOH A O 210 O O . HOH B . ? 0.3572 0.4658 0.4928 0.0627 -0.0191 0.1013 139 HOH A O 211 O O . HOH B . ? 0.4648 0.4321 0.3702 -0.0856 0.0314 0.0274 140 HOH A O 212 O O . HOH B . ? 0.3593 0.4376 0.3699 -0.0960 0.0239 0.0495 141 HOH A O 213 O O . HOH B . ? 0.3804 0.3095 0.3605 -0.0572 -0.0465 -0.0263 142 HOH A O 214 O O . HOH B . ? 0.2282 0.1213 0.1886 0.0099 -0.0586 -0.0013 143 HOH A O 215 O O . HOH B . ? 0.4197 0.3619 0.4319 0.0678 -0.0110 0.0811 144 HOH A O 216 O O . HOH B . ? 0.3913 0.4418 0.4456 -0.0066 -0.0101 0.0502 145 HOH A O 217 O O . HOH B . ? 0.4913 0.3745 0.3740 -0.0433 0.0390 -0.0029 146 HOH A O 218 O O . HOH B . ? 0.5337 0.4089 0.5445 -0.0888 -0.0323 0.0168 147 HOH A O 219 O O . HOH B . ? 0.3038 0.3866 0.4418 -0.0488 -0.0819 -0.0361 148 HOH A O 220 O O . HOH B . ? 0.2601 0.3531 0.3681 0.0106 0.1049 0.0251 149 HOH A O 221 O O . HOH B . ? 0.4309 0.4834 0.4958 -0.0389 -0.0667 -0.0714 150 HOH A O # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 1 1 DG DG A . n A 1 2 LR6 2 2 2 LR6 LR6 A . n A 1 3 DG 3 3 3 DG DG A . n A 1 4 BRU 4 4 4 BRU BRU A . n A 1 5 DA 5 5 5 DA DA A . n A 1 6 DC 6 6 6 DC DC A . n A 1 7 DA 7 7 7 DA DA A . n A 1 8 DC 8 8 8 DC DC A . n # loop_ _pdbx_contact_author.id _pdbx_contact_author.email _pdbx_contact_author.name_first _pdbx_contact_author.name_last _pdbx_contact_author.name_mi _pdbx_contact_author.role _pdbx_contact_author.identifier_ORCID 2 obika@phs.osaka-u.ac.jp Satoshi Obika ? 'principal investigator/group leader' 0000-0002-6842-6812 3 yamaguchi-ta@phs.osaka-u.ac.jp Takao Yamaguchi ? 'principal investigator/group leader' 0000-0003-3180-0257 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 101 40 HOH HOH A . B 2 HOH 2 102 47 HOH HOH A . B 2 HOH 3 103 42 HOH HOH A . B 2 HOH 4 104 11 HOH HOH A . B 2 HOH 5 105 31 HOH HOH A . B 2 HOH 6 106 26 HOH HOH A . B 2 HOH 7 107 18 HOH HOH A . B 2 HOH 8 108 17 HOH HOH A . B 2 HOH 9 109 24 HOH HOH A . B 2 HOH 10 110 29 HOH HOH A . B 2 HOH 11 111 37 HOH HOH A . B 2 HOH 12 112 19 HOH HOH A . B 2 HOH 13 113 32 HOH HOH A . B 2 HOH 14 114 39 HOH HOH A . B 2 HOH 15 115 23 HOH HOH A . B 2 HOH 16 116 14 HOH HOH A . B 2 HOH 17 117 4 HOH HOH A . B 2 HOH 18 118 6 HOH HOH A . B 2 HOH 19 119 43 HOH HOH A . B 2 HOH 20 120 12 HOH HOH A . B 2 HOH 21 121 25 HOH HOH A . B 2 HOH 22 122 8 HOH HOH A . B 2 HOH 23 123 5 HOH HOH A . B 2 HOH 24 124 22 HOH HOH A . B 2 HOH 25 125 3 HOH HOH A . B 2 HOH 26 126 21 HOH HOH A . B 2 HOH 27 127 1 HOH HOH A . B 2 HOH 28 128 30 HOH HOH A . B 2 HOH 29 129 7 HOH HOH A . B 2 HOH 30 130 15 HOH HOH A . B 2 HOH 31 131 28 HOH HOH A . B 2 HOH 32 132 10 HOH HOH A . B 2 HOH 33 133 35 HOH HOH A . B 2 HOH 34 134 27 HOH HOH A . B 2 HOH 35 135 20 HOH HOH A . B 2 HOH 36 136 16 HOH HOH A . B 2 HOH 37 137 9 HOH HOH A . B 2 HOH 38 138 13 HOH HOH A . B 2 HOH 39 139 44 HOH HOH A . B 2 HOH 40 140 46 HOH HOH A . B 2 HOH 41 141 33 HOH HOH A . B 2 HOH 42 142 36 HOH HOH A . B 2 HOH 43 143 2 HOH HOH A . B 2 HOH 44 144 51 HOH HOH A . B 2 HOH 45 145 49 HOH HOH A . B 2 HOH 46 146 48 HOH HOH A . B 2 HOH 47 147 38 HOH HOH A . B 2 HOH 48 148 34 HOH HOH A . B 2 HOH 49 149 50 HOH HOH A . B 2 HOH 50 150 45 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2030 ? 1 MORE 10 ? 1 'SSA (A^2)' 2900 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0.0000000000 -1.0000000000 0.0000000000 42.4940000000 -1.0000000000 0.0000000000 0.0000000000 42.4940000000 0.0000000000 0.0000000000 -1.0000000000 12.1575000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2023-08-09 2 'Structure model' 1 1 2023-09-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' citation 4 2 'Structure model' citation_author # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' 4 2 'Structure model' '_citation.title' 5 2 'Structure model' '_citation_author.identifier_ORCID' # _pdbx_refine_tls.id 1 _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 32.3033 _pdbx_refine_tls.origin_y 8.7428 _pdbx_refine_tls.origin_z 3.6578 _pdbx_refine_tls.T[1][1] 0.0966 _pdbx_refine_tls.T[1][1]_esd ? _pdbx_refine_tls.T[1][2] 0.0064 _pdbx_refine_tls.T[1][2]_esd ? _pdbx_refine_tls.T[1][3] 0.0010 _pdbx_refine_tls.T[1][3]_esd ? _pdbx_refine_tls.T[2][2] 0.0867 _pdbx_refine_tls.T[2][2]_esd ? _pdbx_refine_tls.T[2][3] -0.0018 _pdbx_refine_tls.T[2][3]_esd ? _pdbx_refine_tls.T[3][3] 0.0760 _pdbx_refine_tls.T[3][3]_esd ? _pdbx_refine_tls.L[1][1] 1.3772 _pdbx_refine_tls.L[1][1]_esd ? _pdbx_refine_tls.L[1][2] 0.8143 _pdbx_refine_tls.L[1][2]_esd ? _pdbx_refine_tls.L[1][3] 0.2878 _pdbx_refine_tls.L[1][3]_esd ? _pdbx_refine_tls.L[2][2] 2.3202 _pdbx_refine_tls.L[2][2]_esd ? _pdbx_refine_tls.L[2][3] -0.0906 _pdbx_refine_tls.L[2][3]_esd ? _pdbx_refine_tls.L[3][3] 0.6077 _pdbx_refine_tls.L[3][3]_esd ? _pdbx_refine_tls.S[1][1] -0.0083 _pdbx_refine_tls.S[1][1]_esd ? _pdbx_refine_tls.S[1][2] 0.1349 _pdbx_refine_tls.S[1][2]_esd ? _pdbx_refine_tls.S[1][3] 0.0310 _pdbx_refine_tls.S[1][3]_esd ? _pdbx_refine_tls.S[2][1] -0.1852 _pdbx_refine_tls.S[2][1]_esd ? _pdbx_refine_tls.S[2][2] 0.0768 _pdbx_refine_tls.S[2][2]_esd ? _pdbx_refine_tls.S[2][3] 0.0455 _pdbx_refine_tls.S[2][3]_esd ? _pdbx_refine_tls.S[3][1] 0.0354 _pdbx_refine_tls.S[3][1]_esd ? _pdbx_refine_tls.S[3][2] 0.0713 _pdbx_refine_tls.S[3][2]_esd ? _pdbx_refine_tls.S[3][3] -0.0560 _pdbx_refine_tls.S[3][3]_esd ? # _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_label_asym_id ? _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.beg_auth_asym_id ? _pdbx_refine_tls_group.beg_auth_seq_id ? _pdbx_refine_tls_group.beg_PDB_ins_code ? _pdbx_refine_tls_group.end_label_asym_id ? _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.end_auth_asym_id ? _pdbx_refine_tls_group.end_auth_seq_id ? _pdbx_refine_tls_group.end_PDB_ins_code ? _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.selection_details ;chain 'A' and (resid 1 through 8 ) ; # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.20-1-4487 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XSCALE ? ? ? . 3 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.25 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? SHELXDE ? ? ? . 5 # _pdbx_entry_details.entry_id 8HU5 _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal BRU N1 N N N 1 BRU C2 C N N 2 BRU N3 N N N 3 BRU C4 C N N 4 BRU C5 C N N 5 BRU C6 C N N 6 BRU O2 O N N 7 BRU O4 O N N 8 BRU BR BR N N 9 BRU "C1'" C N R 10 BRU "C2'" C N N 11 BRU "C3'" C N S 12 BRU "C4'" C N R 13 BRU "O3'" O N N 14 BRU "O4'" O N N 15 BRU "C5'" C N N 16 BRU "O5'" O N N 17 BRU P P N N 18 BRU OP1 O N N 19 BRU OP2 O N N 20 BRU OP3 O N N 21 BRU HN3 H N N 22 BRU H6 H N N 23 BRU "H1'" H N N 24 BRU "H2'" H N N 25 BRU "H2''" H N N 26 BRU "H3'" H N N 27 BRU "H4'" H N N 28 BRU "HO3'" H N N 29 BRU "H5'" H N N 30 BRU "H5''" H N N 31 BRU HOP2 H N N 32 BRU HOP3 H N N 33 DA OP3 O N N 34 DA P P N N 35 DA OP1 O N N 36 DA OP2 O N N 37 DA "O5'" O N N 38 DA "C5'" C N N 39 DA "C4'" C N R 40 DA "O4'" O N N 41 DA "C3'" C N S 42 DA "O3'" O N N 43 DA "C2'" C N N 44 DA "C1'" C N R 45 DA N9 N Y N 46 DA C8 C Y N 47 DA N7 N Y N 48 DA C5 C Y N 49 DA C6 C Y N 50 DA N6 N N N 51 DA N1 N Y N 52 DA C2 C Y N 53 DA N3 N Y N 54 DA C4 C Y N 55 DA HOP3 H N N 56 DA HOP2 H N N 57 DA "H5'" H N N 58 DA "H5''" H N N 59 DA "H4'" H N N 60 DA "H3'" H N N 61 DA "HO3'" H N N 62 DA "H2'" H N N 63 DA "H2''" H N N 64 DA "H1'" H N N 65 DA H8 H N N 66 DA H61 H N N 67 DA H62 H N N 68 DA H2 H N N 69 DC OP3 O N N 70 DC P P N N 71 DC OP1 O N N 72 DC OP2 O N N 73 DC "O5'" O N N 74 DC "C5'" C N N 75 DC "C4'" C N R 76 DC "O4'" O N N 77 DC "C3'" C N S 78 DC "O3'" O N N 79 DC "C2'" C N N 80 DC "C1'" C N R 81 DC N1 N N N 82 DC C2 C N N 83 DC O2 O N N 84 DC N3 N N N 85 DC C4 C N N 86 DC N4 N N N 87 DC C5 C N N 88 DC C6 C N N 89 DC HOP3 H N N 90 DC HOP2 H N N 91 DC "H5'" H N N 92 DC "H5''" H N N 93 DC "H4'" H N N 94 DC "H3'" H N N 95 DC "HO3'" H N N 96 DC "H2'" H N N 97 DC "H2''" H N N 98 DC "H1'" H N N 99 DC H41 H N N 100 DC H42 H N N 101 DC H5 H N N 102 DC H6 H N N 103 DG OP3 O N N 104 DG P P N N 105 DG OP1 O N N 106 DG OP2 O N N 107 DG "O5'" O N N 108 DG "C5'" C N N 109 DG "C4'" C N R 110 DG "O4'" O N N 111 DG "C3'" C N S 112 DG "O3'" O N N 113 DG "C2'" C N N 114 DG "C1'" C N R 115 DG N9 N Y N 116 DG C8 C Y N 117 DG N7 N Y N 118 DG C5 C Y N 119 DG C6 C N N 120 DG O6 O N N 121 DG N1 N N N 122 DG C2 C N N 123 DG N2 N N N 124 DG N3 N N N 125 DG C4 C Y N 126 DG HOP3 H N N 127 DG HOP2 H N N 128 DG "H5'" H N N 129 DG "H5''" H N N 130 DG "H4'" H N N 131 DG "H3'" H N N 132 DG "HO3'" H N N 133 DG "H2'" H N N 134 DG "H2''" H N N 135 DG "H1'" H N N 136 DG H8 H N N 137 DG H1 H N N 138 DG H21 H N N 139 DG H22 H N N 140 HOH O O N N 141 HOH H1 H N N 142 HOH H2 H N N 143 LR6 C2 C N N 144 LR6 C4 C N N 145 LR6 C5 C N N 146 LR6 C6 C N N 147 LR6 N1 N N N 148 LR6 N3 N N N 149 LR6 CD C N N 150 LR6 "C1'" C N R 151 LR6 "C2'" C N R 152 LR6 "C3'" C N S 153 LR6 "C4'" C N R 154 LR6 "C5'" C N N 155 LR6 C5M C N N 156 LR6 "C6'" C N N 157 LR6 "C7'" C N N 158 LR6 "C8'" C N N 159 LR6 "C9'" C N N 160 LR6 "N2'" N N N 161 LR6 "N3'" N N N 162 LR6 "N4'" N N N 163 LR6 O2 O N N 164 LR6 "O3'" O N N 165 LR6 O4 O N N 166 LR6 "O4'" O N N 167 LR6 "O5'" O N N 168 LR6 OP1 O N N 169 LR6 OP2 O N N 170 LR6 P P N N 171 LR6 "C10'" C N N 172 LR6 "C11'" C N N 173 LR6 H1 H N N 174 LR6 H2 H N N 175 LR6 H3 H N N 176 LR6 H4 H N N 177 LR6 H5 H N N 178 LR6 H6 H N N 179 LR6 H7 H N N 180 LR6 H8 H N N 181 LR6 H9 H N N 182 LR6 H10 H N N 183 LR6 H11 H N N 184 LR6 H12 H N N 185 LR6 H13 H N N 186 LR6 H14 H N N 187 LR6 H15 H N N 188 LR6 H16 H N N 189 LR6 H17 H N N 190 LR6 H18 H N N 191 LR6 H19 H N N 192 LR6 "HO3'" H N N 193 LR6 HOP2 H N N 194 LR6 H23 H N N 195 LR6 H24 H N N 196 LR6 H25 H N N 197 LR6 H26 H N N 198 LR6 H27 H N N 199 LR6 H28 H N N 200 LR6 OP3 O N N 201 LR6 HOP3 H N N 202 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal BRU N1 C2 sing N N 1 BRU N1 C6 sing N N 2 BRU N1 "C1'" sing N N 3 BRU C2 N3 sing N N 4 BRU C2 O2 doub N N 5 BRU N3 C4 sing N N 6 BRU N3 HN3 sing N N 7 BRU C4 C5 sing N N 8 BRU C4 O4 doub N N 9 BRU C5 C6 doub N N 10 BRU C5 BR sing N N 11 BRU C6 H6 sing N N 12 BRU "C1'" "C2'" sing N N 13 BRU "C1'" "O4'" sing N N 14 BRU "C1'" "H1'" sing N N 15 BRU "C2'" "C3'" sing N N 16 BRU "C2'" "H2'" sing N N 17 BRU "C2'" "H2''" sing N N 18 BRU "C3'" "C4'" sing N N 19 BRU "C3'" "O3'" sing N N 20 BRU "C3'" "H3'" sing N N 21 BRU "C4'" "O4'" sing N N 22 BRU "C4'" "C5'" sing N N 23 BRU "C4'" "H4'" sing N N 24 BRU "O3'" "HO3'" sing N N 25 BRU "C5'" "O5'" sing N N 26 BRU "C5'" "H5'" sing N N 27 BRU "C5'" "H5''" sing N N 28 BRU "O5'" P sing N N 29 BRU P OP1 doub N N 30 BRU P OP2 sing N N 31 BRU P OP3 sing N N 32 BRU OP2 HOP2 sing N N 33 BRU OP3 HOP3 sing N N 34 DA OP3 P sing N N 35 DA OP3 HOP3 sing N N 36 DA P OP1 doub N N 37 DA P OP2 sing N N 38 DA P "O5'" sing N N 39 DA OP2 HOP2 sing N N 40 DA "O5'" "C5'" sing N N 41 DA "C5'" "C4'" sing N N 42 DA "C5'" "H5'" sing N N 43 DA "C5'" "H5''" sing N N 44 DA "C4'" "O4'" sing N N 45 DA "C4'" "C3'" sing N N 46 DA "C4'" "H4'" sing N N 47 DA "O4'" "C1'" sing N N 48 DA "C3'" "O3'" sing N N 49 DA "C3'" "C2'" sing N N 50 DA "C3'" "H3'" sing N N 51 DA "O3'" "HO3'" sing N N 52 DA "C2'" "C1'" sing N N 53 DA "C2'" "H2'" sing N N 54 DA "C2'" "H2''" sing N N 55 DA "C1'" N9 sing N N 56 DA "C1'" "H1'" sing N N 57 DA N9 C8 sing Y N 58 DA N9 C4 sing Y N 59 DA C8 N7 doub Y N 60 DA C8 H8 sing N N 61 DA N7 C5 sing Y N 62 DA C5 C6 sing Y N 63 DA C5 C4 doub Y N 64 DA C6 N6 sing N N 65 DA C6 N1 doub Y N 66 DA N6 H61 sing N N 67 DA N6 H62 sing N N 68 DA N1 C2 sing Y N 69 DA C2 N3 doub Y N 70 DA C2 H2 sing N N 71 DA N3 C4 sing Y N 72 DC OP3 P sing N N 73 DC OP3 HOP3 sing N N 74 DC P OP1 doub N N 75 DC P OP2 sing N N 76 DC P "O5'" sing N N 77 DC OP2 HOP2 sing N N 78 DC "O5'" "C5'" sing N N 79 DC "C5'" "C4'" sing N N 80 DC "C5'" "H5'" sing N N 81 DC "C5'" "H5''" sing N N 82 DC "C4'" "O4'" sing N N 83 DC "C4'" "C3'" sing N N 84 DC "C4'" "H4'" sing N N 85 DC "O4'" "C1'" sing N N 86 DC "C3'" "O3'" sing N N 87 DC "C3'" "C2'" sing N N 88 DC "C3'" "H3'" sing N N 89 DC "O3'" "HO3'" sing N N 90 DC "C2'" "C1'" sing N N 91 DC "C2'" "H2'" sing N N 92 DC "C2'" "H2''" sing N N 93 DC "C1'" N1 sing N N 94 DC "C1'" "H1'" sing N N 95 DC N1 C2 sing N N 96 DC N1 C6 sing N N 97 DC C2 O2 doub N N 98 DC C2 N3 sing N N 99 DC N3 C4 doub N N 100 DC C4 N4 sing N N 101 DC C4 C5 sing N N 102 DC N4 H41 sing N N 103 DC N4 H42 sing N N 104 DC C5 C6 doub N N 105 DC C5 H5 sing N N 106 DC C6 H6 sing N N 107 DG OP3 P sing N N 108 DG OP3 HOP3 sing N N 109 DG P OP1 doub N N 110 DG P OP2 sing N N 111 DG P "O5'" sing N N 112 DG OP2 HOP2 sing N N 113 DG "O5'" "C5'" sing N N 114 DG "C5'" "C4'" sing N N 115 DG "C5'" "H5'" sing N N 116 DG "C5'" "H5''" sing N N 117 DG "C4'" "O4'" sing N N 118 DG "C4'" "C3'" sing N N 119 DG "C4'" "H4'" sing N N 120 DG "O4'" "C1'" sing N N 121 DG "C3'" "O3'" sing N N 122 DG "C3'" "C2'" sing N N 123 DG "C3'" "H3'" sing N N 124 DG "O3'" "HO3'" sing N N 125 DG "C2'" "C1'" sing N N 126 DG "C2'" "H2'" sing N N 127 DG "C2'" "H2''" sing N N 128 DG "C1'" N9 sing N N 129 DG "C1'" "H1'" sing N N 130 DG N9 C8 sing Y N 131 DG N9 C4 sing Y N 132 DG C8 N7 doub Y N 133 DG C8 H8 sing N N 134 DG N7 C5 sing Y N 135 DG C5 C6 sing N N 136 DG C5 C4 doub Y N 137 DG C6 O6 doub N N 138 DG C6 N1 sing N N 139 DG N1 C2 sing N N 140 DG N1 H1 sing N N 141 DG C2 N2 sing N N 142 DG C2 N3 doub N N 143 DG N2 H21 sing N N 144 DG N2 H22 sing N N 145 DG N3 C4 sing N N 146 HOH O H1 sing N N 147 HOH O H2 sing N N 148 LR6 "C9'" "C8'" sing N N 149 LR6 "C11'" "C8'" sing N N 150 LR6 "C8'" "C10'" sing N N 151 LR6 "C8'" "N4'" sing N N 152 LR6 "C7'" "N3'" sing N N 153 LR6 "N4'" CD doub N N 154 LR6 "N3'" CD sing N N 155 LR6 CD "N2'" sing N N 156 LR6 "N2'" "C6'" sing N N 157 LR6 "N2'" "C2'" sing N N 158 LR6 "O3'" "C3'" sing N N 159 LR6 "C6'" "C4'" sing N N 160 LR6 "C2'" "C3'" sing N N 161 LR6 "C2'" "C1'" sing N N 162 LR6 "C3'" "C4'" sing N N 163 LR6 O2 C2 doub N N 164 LR6 "C1'" "O4'" sing N N 165 LR6 "C1'" N1 sing N N 166 LR6 "C4'" "O4'" sing N N 167 LR6 "C4'" "C5'" sing N N 168 LR6 C2 N1 sing N N 169 LR6 C2 N3 sing N N 170 LR6 N1 C6 sing N N 171 LR6 "C5'" "O5'" sing N N 172 LR6 N3 C4 sing N N 173 LR6 "O5'" P sing N N 174 LR6 C6 C5 doub N N 175 LR6 C4 C5 sing N N 176 LR6 C4 O4 doub N N 177 LR6 C5 C5M sing N N 178 LR6 OP1 P doub N N 179 LR6 P OP2 sing N N 180 LR6 C6 H1 sing N N 181 LR6 N3 H2 sing N N 182 LR6 "C1'" H3 sing N N 183 LR6 "C2'" H4 sing N N 184 LR6 "C3'" H5 sing N N 185 LR6 "C5'" H6 sing N N 186 LR6 "C5'" H7 sing N N 187 LR6 C5M H8 sing N N 188 LR6 C5M H9 sing N N 189 LR6 C5M H10 sing N N 190 LR6 "C6'" H11 sing N N 191 LR6 "C6'" H12 sing N N 192 LR6 "C7'" H13 sing N N 193 LR6 "C7'" H14 sing N N 194 LR6 "C7'" H15 sing N N 195 LR6 "C9'" H16 sing N N 196 LR6 "C9'" H17 sing N N 197 LR6 "C9'" H18 sing N N 198 LR6 "N3'" H19 sing N N 199 LR6 "O3'" "HO3'" sing N N 200 LR6 OP2 HOP2 sing N N 201 LR6 "C10'" H23 sing N N 202 LR6 "C10'" H24 sing N N 203 LR6 "C10'" H25 sing N N 204 LR6 "C11'" H26 sing N N 205 LR6 "C11'" H27 sing N N 206 LR6 "C11'" H28 sing N N 207 LR6 P OP3 sing N N 208 LR6 OP3 HOP3 sing N N 209 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 8HU5 'double helix' 8HU5 'a-form double helix' 8HU5 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 1 1_555 A DC 8 8_665 -0.300 -0.207 0.029 -10.515 -11.727 -2.573 1 A_DG1:DC8_A A 1 ? A 8 ? 19 1 1 A DG 3 1_555 A DC 6 8_665 -0.261 -0.151 0.103 -8.415 -15.928 1.942 2 A_DG3:DC6_A A 3 ? A 6 ? 19 1 1 A BRU 4 1_555 A DA 5 8_665 -0.061 -0.166 0.395 -8.046 -10.166 -2.294 3 A_BRU4:DA5_A A 4 ? A 5 ? 20 1 1 A DA 5 1_555 A BRU 4 8_665 0.061 -0.166 0.395 8.046 -10.166 -2.294 4 A_DA5:BRU4_A A 5 ? A 4 ? 20 1 1 A DC 6 1_555 A DG 3 8_665 0.261 -0.151 0.103 8.415 -15.928 1.942 5 A_DC6:DG3_A A 6 ? A 3 ? 19 1 1 A DC 8 1_555 A DG 1 8_665 0.300 -0.207 0.029 10.515 -11.727 -2.573 6 A_DC8:DG1_A A 8 ? A 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 1 1_555 A DC 8 8_665 A DG 3 1_555 A DC 6 8_665 1.139 -3.201 6.270 0.343 16.739 64.994 -4.099 -1.009 5.405 15.315 -0.314 66.886 1 AA_DG1DG3:DC6DC8_AA A 1 ? A 8 ? A 3 ? A 6 ? 1 A DG 3 1_555 A DC 6 8_665 A BRU 4 1_555 A DA 5 8_665 -0.567 -1.421 3.205 -2.104 0.640 37.818 -2.270 0.609 3.207 0.986 3.243 37.880 2 AA_DG3BRU4:DA5DC6_AA A 3 ? A 6 ? A 4 ? A 5 ? 1 A BRU 4 1_555 A DA 5 8_665 A DA 5 1_555 A BRU 4 8_665 0.000 -1.424 2.767 0.000 4.542 27.947 -3.766 0.000 2.509 9.327 0.000 28.306 3 AA_BRU4DA5:BRU4DA5_AA A 4 ? A 5 ? A 5 ? A 4 ? 1 A DA 5 1_555 A BRU 4 8_665 A DC 6 1_555 A DG 3 8_665 0.567 -1.421 3.205 2.104 0.640 37.818 -2.270 -0.609 3.207 0.986 -3.243 37.880 4 AA_DA5DC6:DG3BRU4_AA A 5 ? A 4 ? A 6 ? A 3 ? 1 A DC 6 1_555 A DG 3 8_665 A DC 8 1_555 A DG 1 8_665 -1.139 -3.201 6.270 -0.343 16.739 64.994 -4.099 1.009 5.405 15.315 0.314 66.886 5 AA_DC6DC8:DG1DG3_AA A 6 ? A 3 ? A 8 ? A 1 ? # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Japan Society for the Promotion of Science (JSPS)' Japan 21K06511 1 'Japan Society for the Promotion of Science (JSPS)' Japan 20K05748 2 'Japan Agency for Medical Research and Development (AMED)' Japan JP19am0101084 3 'Japan Agency for Medical Research and Development (AMED)' Japan JP18am0301004, 4 'Japan Agency for Medical Research and Development (AMED)' Japan 19am0401003 5 'Japan Agency for Medical Research and Development (AMED)' Japan JP21ae0121022, 6 'Japan Agency for Medical Research and Development (AMED)' Japan JP21ae0121023 7 'Japan Agency for Medical Research and Development (AMED)' Japan JP21ae012102 8 # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id LR6 _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id LR6 _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name ? _pdbx_initial_refinement_model.accession_code ? _pdbx_initial_refinement_model.details ? # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? #