data_8QWU # _entry.id 8QWU # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.395 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8QWU pdb_00008qwu 10.2210/pdb8qwu/pdb WWPDB D_1292134213 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2024-08-07 2 'Structure model' 1 1 2024-09-04 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_CSD' 4 2 'Structure model' '_citation.journal_id_ISSN' 5 2 'Structure model' '_citation.journal_volume' 6 2 'Structure model' '_citation.page_first' 7 2 'Structure model' '_citation.page_last' 8 2 'Structure model' '_citation.pdbx_database_id_DOI' 9 2 'Structure model' '_citation.pdbx_database_id_PubMed' 10 2 'Structure model' '_citation.title' 11 2 'Structure model' '_citation.year' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8QWU _pdbx_database_status.recvd_initial_deposition_date 2023-10-20 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_contact_author.id 2 _pdbx_contact_author.email perczel.andras@ttk.elte.hu _pdbx_contact_author.name_first Andras _pdbx_contact_author.name_last Perczel _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0003-1252-6416 # _audit_author.name 'Durvanger, Z.' _audit_author.pdbx_ordinal 1 _audit_author.identifier_ORCID 0000-0002-2652-4916 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Commun Biol' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2399-3642 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 7 _citation.language ? _citation.page_first 968 _citation.page_last 968 _citation.title 'Solvent induced amyloid polymorphism and the uncovering of the elusive class 3 amyloid topology.' _citation.year 2024 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s42003-024-06621-8 _citation.pdbx_database_id_PubMed 39122990 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Durvanger, Z.' 1 0000-0002-2652-4916 primary 'Bencs, F.' 2 0009-0003-9246-2228 primary 'Menyhard, D.K.' 3 0000-0002-0095-5531 primary 'Horvath, D.' 4 0000-0001-8239-3933 primary 'Perczel, A.' 5 0000-0003-1252-6416 # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description 'Peptide LYIQNL' _entity.formula_weight 762.894 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code LYIQNL _entity_poly.pdbx_seq_one_letter_code_can LYIQNL _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 LEU n 1 2 TYR n 1 3 ILE n 1 4 GLN n 1 5 ASN n 1 6 LEU n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 6 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 LEU 1 1 1 LEU LEU A . n A 1 2 TYR 2 2 2 TYR TYR A . n A 1 3 ILE 3 3 3 ILE ILE A . n A 1 4 GLN 4 4 4 GLN GLN A . n A 1 5 ASN 5 5 5 ASN ASN A . n A 1 6 LEU 6 6 6 LEU LEU A . n # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LEU 6 ? CG ? A LEU 6 CG 2 1 Y 1 A LEU 6 ? CD1 ? A LEU 6 CD1 3 1 Y 1 A LEU 6 ? CD2 ? A LEU 6 CD2 # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.20.1_4487 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? CrysalisPro ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? CrysalisPro ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? Fragon ? ? ? . 4 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 8QWU _cell.details ? _cell.formula_units_Z ? _cell.length_a 4.848 _cell.length_a_esd ? _cell.length_b 20.005 _cell.length_b_esd ? _cell.length_c 42.650 _cell.length_c_esd ? _cell.volume 4136.378 _cell.volume_esd ? _cell.Z_PDB 4 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8QWU _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8QWU _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'EVAPORATION, RECRYSTALLIZATION' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 4.80 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details 'the peptide was dissolved in 0.1M acetate buffer, pH 4.80 at 0.12 mg/mL concentration and incubated at 310K' _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp 310 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'RIGAKU HyPix-6000HE' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2022-06-20 _diffrn_detector.pdbx_frequency ? _diffrn_detector.id ? _diffrn_detector.number_of_axes ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.54184 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source 'ROTATING ANODE' _diffrn_source.target ? _diffrn_source.type 'RIGAKU PhotonJet-R' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.54184 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_synchrotron_site ? # _reflns.B_iso_Wilson_estimate 8.19 _reflns.entry_id 8QWU _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.55 _reflns.d_resolution_low 18.11 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 706 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 94.01 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 4.83 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 7.4 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.160 _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.998 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 1.55 _reflns_shell.d_res_low 1.61 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 3.5 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 53 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all 0.414 _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.920 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? _reflns_shell.percent_possible_all 68.83 _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 9.13 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 8QWU _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.55 _refine.ls_d_res_low 18.11 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 704 _refine.ls_number_reflns_R_free 70 _refine.ls_number_reflns_R_work 634 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 93.74 _refine.ls_percent_reflns_R_free 9.94 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2352 _refine.ls_R_factor_R_free 0.2437 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2344 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.53 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'GeoStd + Monomer Library + CDL v1.2' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1000 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 16.7572 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.1830 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 1.55 _refine_hist.d_res_low 18.11 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 51 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 51 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.0127 ? 51 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.0344 ? 69 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.0643 ? 8 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.0056 ? 9 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 16.2440 ? 18 ? f_dihedral_angle_d ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 1.55 _refine_ls_shell.d_res_low 18.11 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 70 _refine_ls_shell.number_reflns_R_work 634 _refine_ls_shell.percent_reflns_obs 93.74 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.2344 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_R_complete ? _refine_ls_shell.pdbx_total_number_of_bins_used ? _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? _refine_ls_shell.R_factor_R_free 0.2437 # _struct.entry_id 8QWU _struct.title 'Structure of the amyloid-forming peptide LYIQNL, grown without ethanol' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8QWU _struct_keywords.text 'amyloid, PROTEIN FIBRIL' _struct_keywords.pdbx_keywords 'PROTEIN FIBRIL' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 8QWU _struct_ref.pdbx_db_accession 8QWU _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 8QWU _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 6 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 8QWU _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 6 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 6 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A 1 2 A 1 3 A 1 4 A 1 5 A # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 1_355 x-2,y,z 1.0000000000 0.0000000000 0.0000000000 -9.6960000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 1_455 x-1,y,z 1.0000000000 0.0000000000 0.0000000000 -4.8480000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 4 'crystal symmetry operation' 1_655 x+1,y,z 1.0000000000 0.0000000000 0.0000000000 4.8480000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 5 'crystal symmetry operation' 1_755 x+2,y,z 1.0000000000 0.0000000000 0.0000000000 9.6960000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # loop_ _space_group_symop.id _space_group_symop.operation_xyz 1 x,y,z 2 x+1/2,-y+1/2,-z 3 -x,y+1/2,-z+1/2 4 -x+1/2,-y,z+1/2 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ASN N N N N 1 ASN CA C N S 2 ASN C C N N 3 ASN O O N N 4 ASN CB C N N 5 ASN CG C N N 6 ASN OD1 O N N 7 ASN ND2 N N N 8 ASN OXT O N N 9 ASN H H N N 10 ASN H2 H N N 11 ASN HA H N N 12 ASN HB2 H N N 13 ASN HB3 H N N 14 ASN HD21 H N N 15 ASN HD22 H N N 16 ASN HXT H N N 17 GLN N N N N 18 GLN CA C N S 19 GLN C C N N 20 GLN O O N N 21 GLN CB C N N 22 GLN CG C N N 23 GLN CD C N N 24 GLN OE1 O N N 25 GLN NE2 N N N 26 GLN OXT O N N 27 GLN H H N N 28 GLN H2 H N N 29 GLN HA H N N 30 GLN HB2 H N N 31 GLN HB3 H N N 32 GLN HG2 H N N 33 GLN HG3 H N N 34 GLN HE21 H N N 35 GLN HE22 H N N 36 GLN HXT H N N 37 ILE N N N N 38 ILE CA C N S 39 ILE C C N N 40 ILE O O N N 41 ILE CB C N S 42 ILE CG1 C N N 43 ILE CG2 C N N 44 ILE CD1 C N N 45 ILE OXT O N N 46 ILE H H N N 47 ILE H2 H N N 48 ILE HA H N N 49 ILE HB H N N 50 ILE HG12 H N N 51 ILE HG13 H N N 52 ILE HG21 H N N 53 ILE HG22 H N N 54 ILE HG23 H N N 55 ILE HD11 H N N 56 ILE HD12 H N N 57 ILE HD13 H N N 58 ILE HXT H N N 59 LEU N N N N 60 LEU CA C N S 61 LEU C C N N 62 LEU O O N N 63 LEU CB C N N 64 LEU CG C N N 65 LEU CD1 C N N 66 LEU CD2 C N N 67 LEU OXT O N N 68 LEU H H N N 69 LEU H2 H N N 70 LEU HA H N N 71 LEU HB2 H N N 72 LEU HB3 H N N 73 LEU HG H N N 74 LEU HD11 H N N 75 LEU HD12 H N N 76 LEU HD13 H N N 77 LEU HD21 H N N 78 LEU HD22 H N N 79 LEU HD23 H N N 80 LEU HXT H N N 81 TYR N N N N 82 TYR CA C N S 83 TYR C C N N 84 TYR O O N N 85 TYR CB C N N 86 TYR CG C Y N 87 TYR CD1 C Y N 88 TYR CD2 C Y N 89 TYR CE1 C Y N 90 TYR CE2 C Y N 91 TYR CZ C Y N 92 TYR OH O N N 93 TYR OXT O N N 94 TYR H H N N 95 TYR H2 H N N 96 TYR HA H N N 97 TYR HB2 H N N 98 TYR HB3 H N N 99 TYR HD1 H N N 100 TYR HD2 H N N 101 TYR HE1 H N N 102 TYR HE2 H N N 103 TYR HH H N N 104 TYR HXT H N N 105 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ASN N CA sing N N 1 ASN N H sing N N 2 ASN N H2 sing N N 3 ASN CA C sing N N 4 ASN CA CB sing N N 5 ASN CA HA sing N N 6 ASN C O doub N N 7 ASN C OXT sing N N 8 ASN CB CG sing N N 9 ASN CB HB2 sing N N 10 ASN CB HB3 sing N N 11 ASN CG OD1 doub N N 12 ASN CG ND2 sing N N 13 ASN ND2 HD21 sing N N 14 ASN ND2 HD22 sing N N 15 ASN OXT HXT sing N N 16 GLN N CA sing N N 17 GLN N H sing N N 18 GLN N H2 sing N N 19 GLN CA C sing N N 20 GLN CA CB sing N N 21 GLN CA HA sing N N 22 GLN C O doub N N 23 GLN C OXT sing N N 24 GLN CB CG sing N N 25 GLN CB HB2 sing N N 26 GLN CB HB3 sing N N 27 GLN CG CD sing N N 28 GLN CG HG2 sing N N 29 GLN CG HG3 sing N N 30 GLN CD OE1 doub N N 31 GLN CD NE2 sing N N 32 GLN NE2 HE21 sing N N 33 GLN NE2 HE22 sing N N 34 GLN OXT HXT sing N N 35 ILE N CA sing N N 36 ILE N H sing N N 37 ILE N H2 sing N N 38 ILE CA C sing N N 39 ILE CA CB sing N N 40 ILE CA HA sing N N 41 ILE C O doub N N 42 ILE C OXT sing N N 43 ILE CB CG1 sing N N 44 ILE CB CG2 sing N N 45 ILE CB HB sing N N 46 ILE CG1 CD1 sing N N 47 ILE CG1 HG12 sing N N 48 ILE CG1 HG13 sing N N 49 ILE CG2 HG21 sing N N 50 ILE CG2 HG22 sing N N 51 ILE CG2 HG23 sing N N 52 ILE CD1 HD11 sing N N 53 ILE CD1 HD12 sing N N 54 ILE CD1 HD13 sing N N 55 ILE OXT HXT sing N N 56 LEU N CA sing N N 57 LEU N H sing N N 58 LEU N H2 sing N N 59 LEU CA C sing N N 60 LEU CA CB sing N N 61 LEU CA HA sing N N 62 LEU C O doub N N 63 LEU C OXT sing N N 64 LEU CB CG sing N N 65 LEU CB HB2 sing N N 66 LEU CB HB3 sing N N 67 LEU CG CD1 sing N N 68 LEU CG CD2 sing N N 69 LEU CG HG sing N N 70 LEU CD1 HD11 sing N N 71 LEU CD1 HD12 sing N N 72 LEU CD1 HD13 sing N N 73 LEU CD2 HD21 sing N N 74 LEU CD2 HD22 sing N N 75 LEU CD2 HD23 sing N N 76 LEU OXT HXT sing N N 77 TYR N CA sing N N 78 TYR N H sing N N 79 TYR N H2 sing N N 80 TYR CA C sing N N 81 TYR CA CB sing N N 82 TYR CA HA sing N N 83 TYR C O doub N N 84 TYR C OXT sing N N 85 TYR CB CG sing N N 86 TYR CB HB2 sing N N 87 TYR CB HB3 sing N N 88 TYR CG CD1 doub Y N 89 TYR CG CD2 sing Y N 90 TYR CD1 CE1 sing Y N 91 TYR CD1 HD1 sing N N 92 TYR CD2 CE2 doub Y N 93 TYR CD2 HD2 sing N N 94 TYR CE1 CZ doub Y N 95 TYR CE1 HE1 sing N N 96 TYR CE2 CZ sing Y N 97 TYR CE2 HE2 sing N N 98 TYR CZ OH sing N N 99 TYR OH HH sing N N 100 TYR OXT HXT sing N N 101 # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Hungarian National Research, Development and Innovation Office' Hungary 2018-1.2.1-NKP-2018-00005 1 'European Regional Development Fund' 'European Union' 'VEKOP-2.3.2-16-2017-00014, VEKOP-2.3.3-15-2017-00018' 2 'Hungarian National Research, Development and Innovation Office' Hungary 'Thematic Excellence Program Synth+' 3 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type other _pdbx_initial_refinement_model.source_name Other _pdbx_initial_refinement_model.accession_code ? _pdbx_initial_refinement_model.details 'ideal 5 residue beta strand' # _space_group.name_H-M_alt 'P 21 21 21' _space_group.name_Hall 'P 2ac 2ab' _space_group.IT_number 19 _space_group.crystal_system orthorhombic _space_group.id 1 # _atom_sites.entry_id 8QWU _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 0.206271 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.049988 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.023447 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.scat_dispersion_real _atom_type.scat_dispersion_imag _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c _atom_type.scat_source _atom_type.scat_dispersion_source C ? ? 3.54356 2.42580 ? ? 25.62398 1.50364 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? H ? ? 0.51345 0.48472 ? ? 24.73122 6.32584 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? N ? ? 4.01032 2.96436 ? ? 19.97189 1.75589 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O ? ? 4.49882 3.47563 ? ? 15.80542 1.70748 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_alt_id _atom_site.label_comp_id _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.label_seq_id _atom_site.pdbx_PDB_ins_code _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_seq_id _atom_site.auth_comp_id _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.pdbx_PDB_model_num ATOM 1 N N . LEU A 1 1 ? -2.06143 0.97702 -20.43987 1.000 8.97273 ? 1 LEU A N 1 ATOM 2 C CA . LEU A 1 1 ? -2.33885 0.00680 -19.34058 1.000 6.98299 ? 1 LEU A CA 1 ATOM 3 C C . LEU A 1 1 ? -1.67520 0.48737 -18.06426 1.000 9.66026 ? 1 LEU A C 1 ATOM 4 O O . LEU A 1 1 ? -0.46821 0.63561 -17.98135 1.000 5.57868 ? 1 LEU A O 1 ATOM 5 C CB . LEU A 1 1 ? -1.85680 -1.38855 -19.73524 1.000 16.36347 ? 1 LEU A CB 1 ATOM 6 C CG . LEU A 1 1 ? -2.53868 -2.51242 -18.97431 1.000 30.72655 ? 1 LEU A CG 1 ATOM 7 C CD1 . LEU A 1 1 ? -2.49122 -3.81738 -19.76618 1.000 37.00403 ? 1 LEU A CD1 1 ATOM 8 C CD2 . LEU A 1 1 ? -1.88648 -2.68488 -17.60925 1.000 19.41940 ? 1 LEU A CD2 1 ATOM 9 H H1 . LEU A 1 1 ? -1.19799 1.19272 -20.43428 1.000 10.77819 ? 1 LEU A H1 1 ATOM 10 H H2 . LEU A 1 1 ? -2.26968 0.60672 -21.22193 1.000 10.77819 ? 1 LEU A H2 1 ATOM 11 H H3 . LEU A 1 1 ? -2.55119 1.71025 -20.31901 1.000 10.77819 ? 1 LEU A H3 1 ATOM 12 H HA . LEU A 1 1 ? -3.29196 -0.06397 -19.17485 1.000 8.39050 ? 1 LEU A HA 1 ATOM 13 H HB2 . LEU A 1 1 ? -2.03131 -1.52191 -20.68005 1.000 19.64708 ? 1 LEU A HB2 1 ATOM 14 H HB3 . LEU A 1 1 ? -0.90428 -1.44876 -19.56208 1.000 19.64708 ? 1 LEU A HB3 1 ATOM 15 H HG . LEU A 1 1 ? -3.47296 -2.28696 -18.84320 1.000 36.88278 ? 1 LEU A HG 1 ATOM 16 H HD11 . LEU A 1 1 ? -2.67036 -4.55783 -19.16573 1.000 44.41575 ? 1 LEU A HD11 1 ATOM 17 H HD12 . LEU A 1 1 ? -3.16378 -3.78764 -20.46452 1.000 44.41575 ? 1 LEU A HD12 1 ATOM 18 H HD13 . LEU A 1 1 ? -1.61009 -3.91621 -20.15954 1.000 44.41575 ? 1 LEU A HD13 1 ATOM 19 H HD21 . LEU A 1 1 ? -1.93322 -3.61917 -17.35270 1.000 23.31420 ? 1 LEU A HD21 1 ATOM 20 H HD22 . LEU A 1 1 ? -0.96001 -2.40284 -17.66401 1.000 23.31420 ? 1 LEU A HD22 1 ATOM 21 H HD23 . LEU A 1 1 ? -2.36042 -2.13994 -16.96170 1.000 23.31420 ? 1 LEU A HD23 1 ATOM 22 N N . TYR A 1 2 ? -2.50176 0.77555 -17.06792 1.000 5.70889 ? 2 TYR A N 1 ATOM 23 C CA . TYR A 1 2 ? -2.08175 1.38411 -15.82683 1.000 6.71023 ? 2 TYR A CA 1 ATOM 24 C C . TYR A 1 2 ? -2.64135 0.51279 -14.70216 1.000 5.58552 ? 2 TYR A C 1 ATOM 25 O O . TYR A 1 2 ? -3.85353 0.28246 -14.62936 1.000 6.37238 ? 2 TYR A O 1 ATOM 26 C CB . TYR A 1 2 ? -2.58893 2.83358 -15.73892 1.000 3.52667 ? 2 TYR A CB 1 ATOM 27 C CG . TYR A 1 2 ? -2.29915 3.71252 -16.94754 1.000 4.95966 ? 2 TYR A CG 1 ATOM 28 C CD1 . TYR A 1 2 ? -3.06571 3.63864 -18.11524 1.000 7.17187 ? 2 TYR A CD1 1 ATOM 29 C CD2 . TYR A 1 2 ? -1.26962 4.64372 -16.91068 1.000 7.97806 ? 2 TYR A CD2 1 ATOM 30 C CE1 . TYR A 1 2 ? -2.81077 4.46344 -19.23155 1.000 10.01854 ? 2 TYR A CE1 1 ATOM 31 C CE2 . TYR A 1 2 ? -1.00436 5.47264 -18.01226 1.000 9.62650 ? 2 TYR A CE2 1 ATOM 32 C CZ . TYR A 1 2 ? -1.74920 5.36098 -19.15843 1.000 8.82947 ? 2 TYR A CZ 1 ATOM 33 O OH . TYR A 1 2 ? -1.47651 6.20117 -20.21755 1.000 17.11734 ? 2 TYR A OH 1 ATOM 34 H H . TYR A 1 2 ? -3.34695 0.61877 -17.09396 1.000 6.86158 ? 2 TYR A H 1 ATOM 35 H HA . TYR A 1 2 ? -1.11540 1.41197 -15.74761 1.000 8.06319 ? 2 TYR A HA 1 ATOM 36 H HB2 . TYR A 1 2 ? -3.55184 2.81198 -15.62388 1.000 4.24292 ? 2 TYR A HB2 1 ATOM 37 H HB3 . TYR A 1 2 ? -2.17243 3.25504 -14.97094 1.000 4.24292 ? 2 TYR A HB3 1 ATOM 38 H HD1 . TYR A 1 2 ? -3.76503 3.02701 -18.15723 1.000 8.61716 ? 2 TYR A HD1 1 ATOM 39 H HD2 . TYR A 1 2 ? -0.74789 4.71940 -16.14454 1.000 9.58458 ? 2 TYR A HD2 1 ATOM 40 H HE1 . TYR A 1 2 ? -3.33795 4.40884 -19.99574 1.000 12.03316 ? 2 TYR A HE1 1 ATOM 41 H HE2 . TYR A 1 2 ? -0.32008 6.10064 -17.96454 1.000 11.56272 ? 2 TYR A HE2 1 ATOM 42 H HH . TYR A 1 2 ? -2.15626 6.27910 -20.70485 1.000 20.55173 ? 2 TYR A HH 1 ATOM 43 N N . ILE A 1 3 ? -1.75879 0.02603 -13.82636 1.000 3.51383 ? 3 ILE A N 1 ATOM 44 C CA . ILE A 1 3 ? -2.11914 -0.78064 -12.66691 1.000 3.49104 ? 3 ILE A CA 1 ATOM 45 C C . ILE A 1 3 ? -1.49350 -0.17385 -11.42990 1.000 5.02958 ? 3 ILE A C 1 ATOM 46 O O . ILE A 1 3 ? -0.26988 -0.02511 -11.36150 1.000 1.52714 ? 3 ILE A O 1 ATOM 47 C CB . ILE A 1 3 ? -1.62415 -2.22807 -12.82117 1.000 8.64498 ? 3 ILE A CB 1 ATOM 48 C CG1 . ILE A 1 3 ? -2.31043 -2.93007 -13.97303 1.000 6.53871 ? 3 ILE A CG1 1 ATOM 49 C CG2 . ILE A 1 3 ? -1.83190 -3.05511 -11.52778 1.000 3.49428 ? 3 ILE A CG2 1 ATOM 50 C CD1 . ILE A 1 3 ? -1.59257 -4.19987 -14.46316 1.000 14.61832 ? 3 ILE A CD1 1 ATOM 51 H H . ILE A 1 3 ? -0.91118 0.15740 -13.88884 1.000 4.22751 ? 3 ILE A H 1 ATOM 52 H HA . ILE A 1 3 ? -3.08348 -0.76349 -12.56366 1.000 4.20016 ? 3 ILE A HA 1 ATOM 53 H HB . ILE A 1 3 ? -0.67357 -2.16616 -13.00409 1.000 10.38489 ? 3 ILE A HB 1 ATOM 54 H HG12 . ILE A 1 3 ? -3.20209 -3.18770 -13.69111 1.000 7.85736 ? 3 ILE A HG12 1 ATOM 55 H HG13 . ILE A 1 3 ? -2.36376 -2.31588 -14.72191 1.000 7.85736 ? 3 ILE A HG13 1 ATOM 56 H HG21 . ILE A 1 3 ? -1.37891 -3.90766 -11.62191 1.000 4.20405 ? 3 ILE A HG21 1 ATOM 57 H HG22 . ILE A 1 3 ? -1.46199 -2.56513 -10.77679 1.000 4.20405 ? 3 ILE A HG22 1 ATOM 58 H HG23 . ILE A 1 3 ? -2.78185 -3.19831 -11.39367 1.000 4.20405 ? 3 ILE A HG23 1 ATOM 59 H HD11 . ILE A 1 3 ? -1.44964 -4.13237 -15.42019 1.000 17.55289 ? 3 ILE A HD11 1 ATOM 60 H HD12 . ILE A 1 3 ? -0.74051 -4.27730 -14.00610 1.000 17.55289 ? 3 ILE A HD12 1 ATOM 61 H HD13 . ILE A 1 3 ? -2.14561 -4.97173 -14.26494 1.000 17.55289 ? 3 ILE A HD13 1 ATOM 62 N N . GLN A 1 4 ? -2.32430 0.14421 -10.43246 1.000 5.13489 ? 4 GLN A N 1 ATOM 63 C CA . GLN A 1 4 ? -1.85009 0.55378 -9.11070 1.000 4.99411 ? 4 GLN A CA 1 ATOM 64 C C . GLN A 1 4 ? -2.47952 -0.35254 -8.07104 1.000 2.99152 ? 4 GLN A C 1 ATOM 65 O O . GLN A 1 4 ? -3.70462 -0.48045 -8.01072 1.000 4.34847 ? 4 GLN A O 1 ATOM 66 C CB . GLN A 1 4 ? -2.16642 2.00758 -8.77667 1.000 3.48362 ? 4 GLN A CB 1 ATOM 67 C CG . GLN A 1 4 ? -1.31926 3.00746 -9.61782 1.000 2.91195 ? 4 GLN A CG 1 ATOM 68 C CD . GLN A 1 4 ? -1.95283 3.39207 -10.90039 1.000 7.60012 ? 4 GLN A CD 1 ATOM 69 O OE1 . GLN A 1 4 ? -3.17009 3.53594 -11.00274 1.000 9.84064 ? 4 GLN A OE1 1 ATOM 70 N NE2 . GLN A 1 4 ? -1.10953 3.60044 -11.90995 1.000 8.63777 ? 4 GLN A NE2 1 ATOM 71 H H . GLN A 1 4 ? -3.18145 0.12934 -10.50078 1.000 6.17278 ? 4 GLN A H 1 ATOM 72 H HA . GLN A 1 4 ? -0.88447 0.46314 -9.09447 1.000 6.00385 ? 4 GLN A HA 1 ATOM 73 H HB2 . GLN A 1 4 ? -3.10374 2.17808 -8.95906 1.000 4.19126 ? 4 GLN A HB2 1 ATOM 74 H HB3 . GLN A 1 4 ? -1.97683 2.16585 -7.83864 1.000 4.19126 ? 4 GLN A HB3 1 ATOM 75 H HG2 . GLN A 1 4 ? -1.18510 3.81642 -9.09966 1.000 3.50525 ? 4 GLN A HG2 1 ATOM 76 H HG3 . GLN A 1 4 ? -0.46374 2.59813 -9.82133 1.000 3.50525 ? 4 GLN A HG3 1 ATOM 77 H HE21 . GLN A 1 4 ? -0.26302 3.50884 -11.78902 1.000 10.37624 ? 4 GLN A HE21 1 ATOM 78 H HE22 . GLN A 1 4 ? -1.41150 3.82658 -12.68278 1.000 10.37624 ? 4 GLN A HE22 1 ATOM 79 N N . ASN A 1 5 ? -1.63710 -0.92704 -7.22556 1.000 2.91186 ? 5 ASN A N 1 ATOM 80 C CA . ASN A 1 5 ? -2.04081 -1.81343 -6.13816 1.000 3.15654 ? 5 ASN A CA 1 ATOM 81 C C . ASN A 1 5 ? -1.60177 -1.15065 -4.84282 1.000 6.52706 ? 5 ASN A C 1 ATOM 82 O O . ASN A 1 5 ? -0.39191 -1.01066 -4.59051 1.000 9.12185 ? 5 ASN A O 1 ATOM 83 C CB . ASN A 1 5 ? -1.41903 -3.19812 -6.28275 1.000 3.10355 ? 5 ASN A CB 1 ATOM 84 C CG . ASN A 1 5 ? -1.96518 -3.97847 -7.46034 1.000 6.35013 ? 5 ASN A CG 1 ATOM 85 O OD1 . ASN A 1 5 ? -3.17497 -4.15383 -7.61354 1.000 6.28272 ? 5 ASN A OD1 1 ATOM 86 N ND2 . ASN A 1 5 ? -1.06863 -4.42634 -8.32435 1.000 9.63175 ? 5 ASN A ND2 1 ATOM 87 H H . ASN A 1 5 ? -0.78521 -0.81474 -7.26128 1.000 3.50515 ? 5 ASN A H 1 ATOM 88 H HA . ASN A 1 5 ? -3.00459 -1.92309 -6.13925 1.000 3.79876 ? 5 ASN A HA 1 ATOM 89 H HB2 . ASN A 1 5 ? -0.46198 -3.10135 -6.40762 1.000 3.73517 ? 5 ASN A HB2 1 ATOM 90 H HB3 . ASN A 1 5 ? -1.59863 -3.70884 -5.47789 1.000 3.73517 ? 5 ASN A HB3 1 ATOM 91 H HD21 . ASN A 1 5 ? -1.32168 -4.87594 -9.01241 1.000 11.56902 ? 5 ASN A HD21 1 ATOM 92 H HD22 . ASN A 1 5 ? -0.23289 -4.26782 -8.19784 1.000 11.56902 ? 5 ASN A HD22 1 ATOM 93 N N . LEU A 1 6 ? -2.57264 -0.73333 -4.00947 1.000 8.93283 ? 6 LEU A N 1 ATOM 94 C CA . LEU A 1 6 ? -2.23474 0.02207 -2.79553 1.000 14.13742 ? 6 LEU A CA 1 ATOM 95 C C . LEU A 1 6 ? -2.92146 -0.52348 -1.53580 1.000 20.21593 ? 6 LEU A C 1 ATOM 96 O O . LEU A 1 6 ? -3.83093 -1.35224 -1.59094 1.000 13.18944 ? 6 LEU A O 1 ATOM 97 C CB . LEU A 1 6 ? -2.60936 1.50935 -2.98275 1.000 22.53486 ? 6 LEU A CB 1 ATOM 98 O OXT . LEU A 1 6 ? -2.55841 -0.16776 -0.39899 1.000 14.50420 ? 6 LEU A OXT 1 ATOM 99 H H . LEU A 1 6 ? -3.41322 -0.87339 -4.12522 1.000 10.73031 ? 6 LEU A H 1 ATOM 100 H HA . LEU A 1 6 ? -1.27901 -0.05978 -2.65142 1.000 16.97582 ? 6 LEU A HA 1 #