data_8T89 # _entry.id 8T89 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.382 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8T89 pdb_00008t89 10.2210/pdb8t89/pdb WWPDB D_1000275465 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8T89 _pdbx_database_status.recvd_initial_deposition_date 2023-06-22 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Sawaya, M.R.' 1 0000-0003-0874-9043 'Raskatov, J.A.' 2 0000-0002-0082-9113 'Hazari, A.' 3 0009-0005-2071-1322 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev J.Am.Chem.Soc. _citation.journal_id_ASTM JACSAT _citation.journal_id_CSD ? _citation.journal_id_ISSN 1520-5126 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 145 _citation.language ? _citation.page_first 25917 _citation.page_last 25926 _citation.title 'Racemic Peptides from Amyloid beta and Amylin Form Rippled beta-Sheets Rather Than Pleated beta-Sheets.' _citation.year 2023 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1021/jacs.3c11712 _citation.pdbx_database_id_PubMed 37972334 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Hazari, A.' 1 ? primary 'Sawaya, M.R.' 2 ? primary 'Sajimon, M.' 3 ? primary 'Vlahakis, N.' 4 ? primary 'Rodriguez, J.' 5 ? primary 'Eisenberg, D.' 6 ? primary 'Raskatov, J.A.' 7 ? # _cell.angle_alpha 89.955 _cell.angle_alpha_esd ? _cell.angle_beta 91.778 _cell.angle_beta_esd ? _cell.angle_gamma 110.506 _cell.angle_gamma_esd ? _cell.entry_id 8T89 _cell.details ? _cell.formula_units_Z ? _cell.length_a 11.690 _cell.length_a_esd ? _cell.length_b 11.700 _cell.length_b_esd ? _cell.length_c 18.510 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 2 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8T89 _symmetry.cell_setting ? _symmetry.Int_Tables_number 2 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P -1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'Racemic mixture of amyloid beta segment 16-KLVFFA-21' 724.909 1 ? ? ? ? 2 non-polymer syn 'trifluoroacetic acid' 114.023 1 ? ? ? ? 3 water nat water 18.015 2 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code KLVFFA _entity_poly.pdbx_seq_one_letter_code_can KLVFFA _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 LYS n 1 2 LEU n 1 3 VAL n 1 4 PHE n 1 5 PHE n 1 6 ALA n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 6 _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 8T89 _struct_ref.pdbx_db_accession 8T89 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 8T89 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 6 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 8T89 _struct_ref_seq.db_align_beg 16 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 21 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 16 _struct_ref_seq.pdbx_auth_seq_align_end 21 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 HOH non-polymer . WATER ? 'H2 O' 18.015 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 TFA non-polymer . 'trifluoroacetic acid' ? 'C2 H F3 O2' 114.023 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8T89 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 1.63 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 24.76 _exptl_crystal.description needle-shaped _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'BATCH MODE' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details 'hexafluoroisopropanol, water' _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp 298 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER X 16M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2023-03-31 _diffrn_detector.pdbx_frequency ? _diffrn_detector.id ? _diffrn_detector.number_of_axes ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97918 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 24-ID-E' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.97918 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 24-ID-E _diffrn_source.pdbx_synchrotron_site APS # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 8T89 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.5 _reflns.d_resolution_low 18.50 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 1426 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 97.0 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 6.0 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 4.49 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.172 _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.997 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs 0.157 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_CC_star _reflns_shell.pdbx_R_split _reflns_shell.percent_possible_all _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_percent_possible_ellipsoidal _reflns_shell.pdbx_percent_possible_spherical _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous _reflns_shell.pdbx_percent_possible_spherical_anomalous _reflns_shell.pdbx_redundancy_anomalous _reflns_shell.pdbx_CC_half_anomalous _reflns_shell.pdbx_absDiff_over_sigma_anomalous _reflns_shell.pdbx_percent_possible_anomalous 1.50 1.56 ? ? ? ? ? ? 139 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 1.265 ? ? 1 1 0.767 ? ? ? ? 1.159 ? ? ? ? ? ? ? ? ? 1.56 1.62 ? ? ? ? ? ? 146 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 1.067 ? ? 2 1 0.841 ? ? ? ? 0.979 ? ? ? ? ? ? ? ? ? 1.62 1.69 ? ? ? ? ? ? 149 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.83 ? ? 3 1 0.907 ? ? ? ? 0.761 ? ? ? ? ? ? ? ? ? 1.69 1.77 ? ? ? ? ? ? 122 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.613 ? ? 4 1 0.933 ? ? ? ? 0.561 ? ? ? ? ? ? ? ? ? 1.77 1.87 ? ? ? ? ? ? 128 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.403 ? ? 5 1 0.981 ? ? ? ? 0.369 ? ? ? ? ? ? ? ? ? 1.87 1.98 ? ? ? ? ? ? 120 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.356 ? ? 6 1 0.976 ? ? ? ? 0.323 ? ? ? ? ? ? ? ? ? 1.98 2.12 ? ? ? ? ? ? 103 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.246 ? ? 7 1 0.983 ? ? ? ? 0.224 ? ? ? ? ? ? ? ? ? 2.12 2.29 ? ? ? ? ? ? 115 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.233 ? ? 8 1 0.994 ? ? ? ? 0.214 ? ? ? ? ? ? ? ? ? 2.29 2.51 ? ? ? ? ? ? 92 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.231 ? ? 9 1 0.973 ? ? ? ? 0.209 ? ? ? ? ? ? ? ? ? 2.51 2.81 ? ? ? ? ? ? 91 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.178 ? ? 10 1 0.993 ? ? ? ? 0.161 ? ? ? ? ? ? ? ? ? 2.81 3.24 ? ? ? ? ? ? 79 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.149 ? ? 11 1 0.995 ? ? ? ? 0.136 ? ? ? ? ? ? ? ? ? 3.24 3.97 ? ? ? ? ? ? 63 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.132 ? ? 12 1 0.991 ? ? ? ? 0.119 ? ? ? ? ? ? ? ? ? 3.97 5.61 ? ? ? ? ? ? 54 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.094 ? ? 13 1 0.998 ? ? ? ? 0.086 ? ? ? ? ? ? ? ? ? 5.61 18.50 ? ? ? ? ? ? 23 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.154 ? ? 14 1 0.997 ? ? ? ? 0.141 ? ? ? ? ? ? ? ? ? # _refine.aniso_B[1][1] -0.834 _refine.aniso_B[1][2] 1.272 _refine.aniso_B[1][3] 0.288 _refine.aniso_B[2][2] 1.116 _refine.aniso_B[2][3] -0.319 _refine.aniso_B[3][3] -1.546 _refine.B_iso_max ? _refine.B_iso_mean 24.810 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc 0.976 _refine.correlation_coeff_Fo_to_Fc_free 0.970 _refine.details 'Hydrogens have been used if present in the input file' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 8T89 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.500 _refine.ls_d_res_low 18.500 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 1426 _refine.ls_number_reflns_R_free 143 _refine.ls_number_reflns_R_work 1283 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 97.007 _refine.ls_percent_reflns_R_free 10.028 _refine.ls_R_factor_all 0.225 _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_free 0.2270 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2252 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'MASK BULK SOLVENT' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'AB INITIO PHASING' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.086 _refine.pdbx_overall_ESU_R_Free 0.078 _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 52 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 7 _refine_hist.number_atoms_solvent 2 _refine_hist.number_atoms_total 61 _refine_hist.d_res_high 1.500 _refine_hist.d_res_low 18.500 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.012 0.012 59 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 0.030 0.016 57 ? r_bond_other_d ? ? 'X-RAY DIFFRACTION' ? 1.577 1.589 79 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 0.511 1.566 128 ? r_angle_other_deg ? ? 'X-RAY DIFFRACTION' ? 5.502 5.000 5 ? r_dihedral_angle_1_deg ? ? 'X-RAY DIFFRACTION' ? 16.043 10.000 9 ? r_dihedral_angle_3_deg ? ? 'X-RAY DIFFRACTION' ? 14.756 10.000 2 ? r_dihedral_angle_6_deg ? ? 'X-RAY DIFFRACTION' ? 0.058 0.200 9 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.010 0.020 57 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? 0.000 0.020 15 ? r_gen_planes_other ? ? 'X-RAY DIFFRACTION' ? 0.134 0.200 2 ? r_nbd_refined ? ? 'X-RAY DIFFRACTION' ? 0.163 0.200 34 ? r_symmetry_nbd_other ? ? 'X-RAY DIFFRACTION' ? 0.212 0.200 24 ? r_nbtor_refined ? ? 'X-RAY DIFFRACTION' ? 0.094 0.200 34 ? r_symmetry_nbtor_other ? ? 'X-RAY DIFFRACTION' ? 0.031 0.200 2 ? r_xyhbond_nbd_refined ? ? 'X-RAY DIFFRACTION' ? 0.135 0.200 3 ? r_symmetry_nbd_refined ? ? 'X-RAY DIFFRACTION' ? 0.139 0.200 32 ? r_nbd_other ? ? 'X-RAY DIFFRACTION' ? 0.120 0.200 4 ? r_symmetry_xyhbond_nbd_refined ? ? 'X-RAY DIFFRACTION' ? 2.100 1.890 23 ? r_mcbond_it ? ? 'X-RAY DIFFRACTION' ? 2.106 1.860 23 ? r_mcbond_other ? ? 'X-RAY DIFFRACTION' ? 3.266 2.772 27 ? r_mcangle_it ? ? 'X-RAY DIFFRACTION' ? 3.385 2.819 28 ? r_mcangle_other ? ? 'X-RAY DIFFRACTION' ? 4.535 2.740 36 ? r_scbond_it ? ? 'X-RAY DIFFRACTION' ? 3.911 2.449 31 ? r_scbond_other ? ? 'X-RAY DIFFRACTION' ? 6.718 3.928 52 ? r_scangle_it ? ? 'X-RAY DIFFRACTION' ? 5.827 3.459 44 ? r_scangle_other ? ? 'X-RAY DIFFRACTION' ? 8.269 42.362 51 ? r_lrange_it ? ? 'X-RAY DIFFRACTION' ? 8.037 35.129 49 ? r_lrange_other ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free _refine_ls_shell.R_factor_R_free 'X-RAY DIFFRACTION' 1.500 1.676 431 . 42 375 96.7517 . 0.361 . . 0.363 . . . . . 0.333 . 5 . 0.879 0.846 0.340 'X-RAY DIFFRACTION' 1.676 1.932 359 . 35 313 96.9359 . 0.269 . . 0.268 . . . . . 0.234 . 5 . 0.932 0.915 0.281 'X-RAY DIFFRACTION' 1.932 2.360 305 . 29 264 96.0656 . 0.235 . . 0.239 . . . . . 0.231 . 5 . 0.960 0.971 0.210 'X-RAY DIFFRACTION' 2.360 3.311 238 . 23 212 98.7395 . 0.209 . . 0.209 . . . . . 0.219 . 5 . 0.978 0.981 0.212 'X-RAY DIFFRACTION' 3.311 18.500 137 . 14 119 97.0803 . 0.168 . . 0.165 . . . . . 0.248 . 5 . 0.988 0.985 0.199 # _struct.entry_id 8T89 _struct.title 'Racemic mixture of amyloid beta segment 16-KLVFFA-21 forms heterochiral rippled beta-sheet' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8T89 _struct_keywords.text 'Rippled beta sheet, amyloid fibril, PROTEIN FIBRIL' _struct_keywords.pdbx_keywords 'PROTEIN FIBRIL' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _atom_sites.entry_id 8T89 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.085543 _atom_sites.fract_transf_matrix[1][2] 0.031994 _atom_sites.fract_transf_matrix[1][3] 0.003000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.091252 _atom_sites.fract_transf_matrix[2][3] 0.000983 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.054054 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.pdbx_scat_Z _atom_type.pdbx_N_electrons _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c C 6 6 2.310 20.844 1.020 10.208 1.589 0.569 0.865 51.651 0.216 F 9 9 3.539 10.282 2.641 4.294 1.517 0.262 1.024 26.148 0.304 H 1 1 0.493 10.511 0.323 26.126 0.140 3.142 0.041 57.800 0.003 N 7 7 12.222 0.006 3.135 9.893 2.014 28.997 1.167 0.583 -11.538 O 8 8 3.049 13.277 2.287 5.701 1.546 0.324 0.867 32.909 0.251 # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_alt_id _atom_site.label_comp_id _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.label_seq_id _atom_site.pdbx_PDB_ins_code _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_seq_id _atom_site.auth_comp_id _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.pdbx_PDB_model_num _atom_site.calc_flag ATOM 1 N N . LYS A 1 1 ? -5.348 6.055 16.461 1.000 19.660 0 16 LYS A N 1 ? ATOM 2 C CA . LYS A 1 1 ? -4.123 5.550 15.848 1.000 17.920 0 16 LYS A CA 1 ? ATOM 3 C C . LYS A 1 1 ? -3.894 6.204 14.496 1.000 17.290 0 16 LYS A C 1 ? ATOM 4 O O . LYS A 1 1 ? -4.854 6.505 13.796 1.000 19.840 0 16 LYS A O 1 ? ATOM 5 C CB . LYS A 1 1 ? -4.300 4.042 15.642 1.000 21.380 0 16 LYS A CB 1 ? ATOM 6 C CG . LYS A 1 1 ? -3.030 3.257 15.899 1.000 29.530 0 16 LYS A CG 1 ? ATOM 7 C CD . LYS A 1 1 ? -2.785 3.108 17.407 1.000 32.110 0 16 LYS A CD 1 ? ATOM 8 C CE . LYS A 1 1 ? -3.669 2.037 18.008 1.000 40.740 0 16 LYS A CE 1 ? ATOM 9 N NZ . LYS A 1 1 ? -3.520 1.999 19.487 1.000 41.570 0 16 LYS A NZ 1 ? ATOM 10 H H2 . LYS A 1 1 ? -5.125 6.654 17.178 1.000 19.130 0 16 LYS A H2 1 c ATOM 11 H H3 . LYS A 1 1 ? -5.883 6.516 15.811 1.000 19.110 0 16 LYS A H3 1 c ATOM 12 H HA . LYS A 1 1 ? -3.359 5.726 16.443 1.000 18.790 0 16 LYS A HA 1 c ATOM 13 H HB2 . LYS A 1 1 ? -5.002 3.721 16.244 1.000 22.210 0 16 LYS A HB2 1 c ATOM 14 H HB3 . LYS A 1 1 ? -4.592 3.879 14.721 1.000 22.140 0 16 LYS A HB3 1 c ATOM 15 H HG2 . LYS A 1 1 ? -3.106 2.370 15.490 1.000 27.900 0 16 LYS A HG2 1 c ATOM 16 H HG3 . LYS A 1 1 ? -2.271 3.724 15.488 1.000 27.900 0 16 LYS A HG3 1 c ATOM 17 H HD2 . LYS A 1 1 ? -1.845 2.874 17.562 1.000 33.290 0 16 LYS A HD2 1 c ATOM 18 H HD3 . LYS A 1 1 ? -2.964 3.962 17.853 1.000 33.210 0 16 LYS A HD3 1 c ATOM 19 H HE2 . LYS A 1 1 ? -4.602 2.214 17.786 1.000 38.590 0 16 LYS A HE2 1 c ATOM 20 H HE3 . LYS A 1 1 ? -3.429 1.166 17.639 1.000 38.670 0 16 LYS A HE3 1 c ATOM 21 H HZ1 . LYS A 1 1 ? -4.295 1.719 19.866 1.000 41.300 0 16 LYS A HZ1 1 c ATOM 22 H HZ2 . LYS A 1 1 ? -2.857 1.425 19.713 1.000 41.300 0 16 LYS A HZ2 1 c ATOM 23 H HZ3 . LYS A 1 1 ? -3.318 2.825 19.801 1.000 41.260 0 16 LYS A HZ3 1 c ATOM 24 N N . LEU A 1 2 ? -2.637 6.324 14.099 1.000 16.950 0 17 LEU A N 1 ? ATOM 25 C CA . LEU A 1 2 ? -2.306 6.891 12.801 1.000 16.380 0 17 LEU A CA 1 ? ATOM 26 C C . LEU A 1 2 ? -1.060 6.175 12.322 1.000 17.650 0 17 LEU A C 1 ? ATOM 27 O O . LEU A 1 2 ? -0.036 6.204 13.004 1.000 18.790 0 17 LEU A O 1 ? ATOM 28 C CB . LEU A 1 2 ? -2.057 8.388 12.994 1.000 21.190 0 17 LEU A CB 1 ? ATOM 29 C CG . LEU A 1 2 ? -1.803 9.204 11.746 1.000 24.700 0 17 LEU A CG 1 ? ATOM 30 C CD1 . LEU A 1 2 ? -3.051 9.362 10.951 1.000 26.730 0 17 LEU A CD1 1 ? ATOM 31 C CD2 . LEU A 1 2 ? -1.317 10.604 12.144 1.000 31.320 0 17 LEU A CD2 1 ? ATOM 32 H H . LEU A 1 2 ? -1.889 6.018 14.706 1.000 16.900 0 17 LEU A H 1 c ATOM 33 H HA . LEU A 1 2 ? -3.047 6.741 12.173 1.000 17.590 0 17 LEU A HA 1 c ATOM 34 H HB2 . LEU A 1 2 ? -2.832 8.767 13.454 1.000 20.700 0 17 LEU A HB2 1 c ATOM 35 H HB3 . LEU A 1 2 ? -1.287 8.492 13.588 1.000 20.690 0 17 LEU A HB3 1 c ATOM 36 H HG . LEU A 1 2 ? -1.114 8.760 11.193 1.000 25.470 0 17 LEU A HG 1 c ATOM 37 H HD11 . LEU A 1 2 ? -2.877 9.935 10.184 1.000 26.090 0 17 LEU A HD11 1 c ATOM 38 H HD12 . LEU A 1 2 ? -3.351 8.491 10.642 1.000 26.040 0 17 LEU A HD12 1 c ATOM 39 H HD13 . LEU A 1 2 ? -3.741 9.766 11.506 1.000 26.070 0 17 LEU A HD13 1 c ATOM 40 H HD21 . LEU A 1 2 ? -1.251 11.164 11.351 1.000 29.100 0 17 LEU A HD21 1 c ATOM 41 H HD22 . LEU A 1 2 ? -1.947 11.001 12.770 1.000 29.110 0 17 LEU A HD22 1 c ATOM 42 H HD23 . LEU A 1 2 ? -0.442 10.534 12.564 1.000 29.110 0 17 LEU A HD23 1 c ATOM 43 N N . VAL A 1 3 ? -1.186 5.495 11.190 1.000 16.670 0 18 VAL A N 1 ? ATOM 44 C CA . VAL A 1 3 ? -0.097 4.751 10.603 1.000 16.980 0 18 VAL A CA 1 ? ATOM 45 C C . VAL A 1 3 ? 0.080 5.221 9.171 1.000 17.990 0 18 VAL A C 1 ? ATOM 46 O O . VAL A 1 3 ? -0.900 5.289 8.433 1.000 18.830 0 18 VAL A O 1 ? ATOM 47 C CB . VAL A 1 3 ? -0.407 3.245 10.662 1.000 19.120 0 18 VAL A CB 1 ? ATOM 48 C CG1 . VAL A 1 3 ? 0.678 2.450 9.968 1.000 22.640 0 18 VAL A CG1 1 ? ATOM 49 C CG2 . VAL A 1 3 ? -0.565 2.771 12.094 1.000 20.810 0 18 VAL A CG2 1 ? ATOM 50 H H . VAL A 1 3 ? -2.077 5.494 10.715 1.000 16.970 0 18 VAL A H 1 c ATOM 51 H HA . VAL A 1 3 ? 0.717 4.929 11.102 1.000 17.500 0 18 VAL A HA 1 c ATOM 52 H HB . VAL A 1 3 ? -1.260 3.089 10.186 1.000 19.610 0 18 VAL A HB 1 c ATOM 53 H HG11 . VAL A 1 3 ? 0.590 1.509 10.198 1.000 21.480 0 18 VAL A HG11 1 c ATOM 54 H HG12 . VAL A 1 3 ? 0.596 2.554 9.004 1.000 21.480 0 18 VAL A HG12 1 c ATOM 55 H HG13 . VAL A 1 3 ? 1.550 2.773 10.254 1.000 21.480 0 18 VAL A HG13 1 c ATOM 56 H HG21 . VAL A 1 3 ? -0.656 1.802 12.109 1.000 20.270 0 18 VAL A HG21 1 c ATOM 57 H HG22 . VAL A 1 3 ? 0.217 3.030 12.610 1.000 20.270 0 18 VAL A HG22 1 c ATOM 58 H HG23 . VAL A 1 3 ? -1.359 3.175 12.485 1.000 20.260 0 18 VAL A HG23 1 c ATOM 59 N N . PHE A 1 4 ? 1.301 5.492 8.755 1.000 16.490 0 19 PHE A N 1 ? ATOM 60 C CA . PHE A 1 4 ? 1.538 6.094 7.454 1.000 16.950 0 19 PHE A CA 1 ? ATOM 61 C C . PHE A 1 4 ? 2.820 5.516 6.881 1.000 17.350 0 19 PHE A C 1 ? ATOM 62 O O . PHE A 1 4 ? 3.859 5.581 7.541 1.000 18.300 0 19 PHE A O 1 ? ATOM 63 C CB . PHE A 1 4 ? 1.656 7.623 7.586 1.000 19.180 0 19 PHE A CB 1 ? ATOM 64 C CG . PHE A 1 4 ? 1.576 8.368 6.279 1.000 22.130 0 19 PHE A CG 1 ? ATOM 65 C CD1 . PHE A 1 4 ? 2.664 8.440 5.435 1.000 29.760 0 19 PHE A CD1 1 ? ATOM 66 C CD2 . PHE A 1 4 ? 0.365 8.921 5.876 1.000 26.630 0 19 PHE A CD2 1 ? ATOM 67 C CE1 . PHE A 1 4 ? 2.556 9.117 4.227 1.000 33.890 0 19 PHE A CE1 1 ? ATOM 68 C CE2 . PHE A 1 4 ? 0.247 9.584 4.661 1.000 30.720 0 19 PHE A CE2 1 ? ATOM 69 C CZ . PHE A 1 4 ? 1.354 9.679 3.850 1.000 32.280 0 19 PHE A CZ 1 ? ATOM 70 H H . PHE A 1 4 ? 2.091 5.278 9.347 1.000 16.940 0 19 PHE A H 1 c ATOM 71 H HA . PHE A 1 4 ? 0.786 5.876 6.848 1.000 17.340 0 19 PHE A HA 1 c ATOM 72 H HB2 . PHE A 1 4 ? 0.939 7.939 8.174 1.000 19.290 0 19 PHE A HB2 1 c ATOM 73 H HB3 . PHE A 1 4 ? 2.511 7.833 8.017 1.000 19.270 0 19 PHE A HB3 1 c ATOM 74 H HD1 . PHE A 1 4 ? 3.489 8.063 5.696 1.000 28.550 0 19 PHE A HD1 1 c ATOM 75 H HD2 . PHE A 1 4 ? -0.386 8.853 6.444 1.000 26.560 0 19 PHE A HD2 1 c ATOM 76 H HE1 . PHE A 1 4 ? 3.307 9.183 3.658 1.000 31.970 0 19 PHE A HE1 1 c ATOM 77 H HE2 . PHE A 1 4 ? -0.573 9.976 4.406 1.000 29.840 0 19 PHE A HE2 1 c ATOM 78 H HZ . PHE A 1 4 ? 1.289 10.130 3.024 1.000 31.770 0 19 PHE A HZ 1 c ATOM 79 N N . PHE A 1 5 ? 2.721 4.896 5.705 1.000 16.860 0 20 PHE A N 1 ? ATOM 80 C CA . PHE A 1 5 ? 3.857 4.350 5.002 1.000 15.450 0 20 PHE A CA 1 ? ATOM 81 C C . PHE A 1 5 ? 4.072 5.147 3.725 1.000 20.250 0 20 PHE A C 1 ? ATOM 82 O O . PHE A 1 5 ? 3.139 5.537 3.026 1.000 21.640 0 20 PHE A O 1 ? ATOM 83 C CB . PHE A 1 5 ? 3.652 2.861 4.685 1.000 16.560 0 20 PHE A CB 1 ? ATOM 84 C CG . PHE A 1 5 ? 3.578 2.030 5.922 1.000 18.730 0 20 PHE A CG 1 ? ATOM 85 C CD1 . PHE A 1 5 ? 4.704 1.856 6.687 1.000 20.180 0 20 PHE A CD1 1 ? ATOM 86 C CD2 . PHE A 1 5 ? 2.408 1.459 6.340 1.000 21.820 0 20 PHE A CD2 1 ? ATOM 87 C CE1 . PHE A 1 5 ? 4.672 1.094 7.836 1.000 20.360 0 20 PHE A CE1 1 ? ATOM 88 C CE2 . PHE A 1 5 ? 2.387 0.682 7.492 1.000 24.230 0 20 PHE A CE2 1 ? ATOM 89 C CZ . PHE A 1 5 ? 3.512 0.536 8.255 1.000 23.420 0 20 PHE A CZ 1 ? ATOM 90 H H . PHE A 1 5 ? 1.809 4.799 5.282 1.000 16.630 0 20 PHE A H 1 c ATOM 91 H HA . PHE A 1 5 ? 4.659 4.445 5.572 1.000 16.790 0 20 PHE A HA 1 c ATOM 92 H HB2 . PHE A 1 5 ? 2.823 2.756 4.173 1.000 16.790 0 20 PHE A HB2 1 c ATOM 93 H HB3 . PHE A 1 5 ? 4.397 2.549 4.130 1.000 16.780 0 20 PHE A HB3 1 c ATOM 94 H HD1 . PHE A 1 5 ? 5.515 2.253 6.413 1.000 20.010 0 20 PHE A HD1 1 c ATOM 95 H HD2 . PHE A 1 5 ? 1.623 1.564 5.826 1.000 21.500 0 20 PHE A HD2 1 c ATOM 96 H HE1 . PHE A 1 5 ? 5.456 0.988 8.350 1.000 21.000 0 20 PHE A HE1 1 c ATOM 97 H HE2 . PHE A 1 5 ? 1.576 0.293 7.778 1.000 23.160 0 20 PHE A HE2 1 c ATOM 98 H HZ . PHE A 1 5 ? 3.493 0.007 9.036 1.000 22.620 0 20 PHE A HZ 1 c ATOM 99 N N . ALA A 1 6 ? 5.337 5.296 3.368 1.000 21.190 0 21 ALA A N 1 ? ATOM 100 C CA . ALA A 1 6 ? 5.700 5.860 2.073 1.000 23.280 0 21 ALA A CA 1 ? ATOM 101 C C . ALA A 1 6 ? 6.898 5.102 1.486 1.000 30.240 0 21 ALA A C 1 ? ATOM 102 O O . ALA A 1 6 ? 7.031 5.023 0.254 1.000 31.220 0 21 ALA A O 1 ? ATOM 103 C CB . ALA A 1 6 ? 6.026 7.301 2.262 1.000 25.850 0 21 ALA A CB 1 ? ATOM 104 O OXT . ALA A 1 6 ? 7.736 4.547 2.229 1.000 23.990 0 21 ALA A OXT 1 ? ATOM 105 H H . ALA A 1 6 ? 6.073 5.016 4.000 1.000 21.420 0 21 ALA A H 1 c ATOM 106 H HA . ALA A 1 6 ? 4.936 5.776 1.455 1.000 24.510 0 21 ALA A HA 1 c ATOM 107 H HB1 . ALA A 1 6 ? 6.235 7.703 1.401 1.000 25.030 0 21 ALA A HB1 1 c ATOM 108 H HB2 . ALA A 1 6 ? 5.263 7.758 2.655 1.000 25.030 0 21 ALA A HB2 1 c ATOM 109 H HB3 . ALA A 1 6 ? 6.793 7.388 2.852 1.000 25.030 0 21 ALA A HB3 1 c HETATM 110 C C1 . TFA B 2 . ? -5.141 9.471 16.454 1.000 35.750 0 101 TFA A C1 1 ? HETATM 111 C C2 . TFA B 2 . ? -4.525 10.839 16.162 1.000 48.930 0 101 TFA A C2 1 ? HETATM 112 O O . TFA B 2 . ? -6.405 9.444 16.514 1.000 38.980 0 101 TFA A O 1 ? HETATM 113 F F1 . TFA B 2 . ? -4.835 11.658 17.128 1.000 45.990 0 101 TFA A F1 1 ? HETATM 114 F F2 . TFA B 2 . ? -3.181 10.870 16.089 1.000 45.760 0 101 TFA A F2 1 ? HETATM 115 F F3 . TFA B 2 . ? -4.969 11.337 15.031 1.000 44.060 0 101 TFA A F3 1 ? HETATM 116 O OXT . TFA B 2 . ? -4.331 8.599 16.702 1.000 29.400 0 101 TFA A OXT 1 ? HETATM 117 O O . HOH C 3 . ? 2.805 7.442 0.881 1.000 33.160 0 201 HOH A O 1 ? HETATM 118 O O A HOH C 3 . ? -5.459 -0.383 19.354 0.500 27.360 0 202 HOH A O 1 ? HETATM 119 O O B HOH C 3 . ? -8.704 9.220 17.913 0.500 28.490 0 202 HOH A O 1 ? # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 LYS 1 16 16 LYS LYS A . n A 1 2 LEU 2 17 17 LEU LEU A . n A 1 3 VAL 3 18 18 VAL VAL A . n A 1 4 PHE 4 19 19 PHE PHE A . n A 1 5 PHE 5 20 20 PHE PHE A . n A 1 6 ALA 6 21 21 ALA ALA A . n # _pdbx_contact_author.id 2 _pdbx_contact_author.email jraskato@ucsc.edu _pdbx_contact_author.name_first Jevgenij _pdbx_contact_author.name_last Raskatov _pdbx_contact_author.name_mi A _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-0082-9113 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 TFA 1 101 101 TFA TFA A . C 3 HOH 1 201 102 HOH HOH A . C 3 HOH 2 202 103 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C 1 2 A,B,C 1 3 A,B,C 1 4 A,B,C 1 5 A,B,C 1 6 A,B,C # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 1_655 x+1,y,z 1.0000000000 0.0000000000 0.0000000000 11.6900000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 1_455 x-1,y,z 1.0000000000 0.0000000000 0.0000000000 -11.6900000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 4 'crystal symmetry operation' 2_566 -x,-y+1,-z+1 -1.0000000000 0.0000000000 0.0000000000 -4.6728832539 0.0000000000 -1.0000000000 0.0000000000 10.7593626905 0.0000000000 0.0000000000 -1.0000000000 18.5000151136 5 'crystal symmetry operation' 2_466 -x-1,-y+1,-z+1 -1.0000000000 0.0000000000 0.0000000000 -16.3628832539 0.0000000000 -1.0000000000 0.0000000000 10.7593626905 0.0000000000 0.0000000000 -1.0000000000 18.5000151136 6 'crystal symmetry operation' 2_666 -x+1,-y+1,-z+1 -1.0000000000 0.0000000000 0.0000000000 7.0171167461 0.0000000000 -1.0000000000 0.0000000000 10.7593626905 0.0000000000 0.0000000000 -1.0000000000 18.5000151136 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2023-11-29 2 'Structure model' 1 1 2023-12-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' 4 2 'Structure model' '_citation_author.identifier_ORCID' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0352 1 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XSCALE ? ? ? . 2 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? SHELXT ? ? ? . 4 # _pdbx_entry_details.entry_id 8T89 _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 HOH O O N N 14 HOH H1 H N N 15 HOH H2 H N N 16 LEU N N N N 17 LEU CA C N S 18 LEU C C N N 19 LEU O O N N 20 LEU CB C N N 21 LEU CG C N N 22 LEU CD1 C N N 23 LEU CD2 C N N 24 LEU OXT O N N 25 LEU H H N N 26 LEU H2 H N N 27 LEU HA H N N 28 LEU HB2 H N N 29 LEU HB3 H N N 30 LEU HG H N N 31 LEU HD11 H N N 32 LEU HD12 H N N 33 LEU HD13 H N N 34 LEU HD21 H N N 35 LEU HD22 H N N 36 LEU HD23 H N N 37 LEU HXT H N N 38 LYS N N N N 39 LYS CA C N S 40 LYS C C N N 41 LYS O O N N 42 LYS CB C N N 43 LYS CG C N N 44 LYS CD C N N 45 LYS CE C N N 46 LYS NZ N N N 47 LYS OXT O N N 48 LYS H H N N 49 LYS H2 H N N 50 LYS HA H N N 51 LYS HB2 H N N 52 LYS HB3 H N N 53 LYS HG2 H N N 54 LYS HG3 H N N 55 LYS HD2 H N N 56 LYS HD3 H N N 57 LYS HE2 H N N 58 LYS HE3 H N N 59 LYS HZ1 H N N 60 LYS HZ2 H N N 61 LYS HZ3 H N N 62 LYS HXT H N N 63 PHE N N N N 64 PHE CA C N S 65 PHE C C N N 66 PHE O O N N 67 PHE CB C N N 68 PHE CG C Y N 69 PHE CD1 C Y N 70 PHE CD2 C Y N 71 PHE CE1 C Y N 72 PHE CE2 C Y N 73 PHE CZ C Y N 74 PHE OXT O N N 75 PHE H H N N 76 PHE H2 H N N 77 PHE HA H N N 78 PHE HB2 H N N 79 PHE HB3 H N N 80 PHE HD1 H N N 81 PHE HD2 H N N 82 PHE HE1 H N N 83 PHE HE2 H N N 84 PHE HZ H N N 85 PHE HXT H N N 86 TFA C1 C N N 87 TFA C2 C N N 88 TFA O O N N 89 TFA F1 F N N 90 TFA F2 F N N 91 TFA F3 F N N 92 TFA OXT O N N 93 TFA HXT H N N 94 VAL N N N N 95 VAL CA C N S 96 VAL C C N N 97 VAL O O N N 98 VAL CB C N N 99 VAL CG1 C N N 100 VAL CG2 C N N 101 VAL OXT O N N 102 VAL H H N N 103 VAL H2 H N N 104 VAL HA H N N 105 VAL HB H N N 106 VAL HG11 H N N 107 VAL HG12 H N N 108 VAL HG13 H N N 109 VAL HG21 H N N 110 VAL HG22 H N N 111 VAL HG23 H N N 112 VAL HXT H N N 113 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 HOH O H1 sing N N 13 HOH O H2 sing N N 14 LEU N CA sing N N 15 LEU N H sing N N 16 LEU N H2 sing N N 17 LEU CA C sing N N 18 LEU CA CB sing N N 19 LEU CA HA sing N N 20 LEU C O doub N N 21 LEU C OXT sing N N 22 LEU CB CG sing N N 23 LEU CB HB2 sing N N 24 LEU CB HB3 sing N N 25 LEU CG CD1 sing N N 26 LEU CG CD2 sing N N 27 LEU CG HG sing N N 28 LEU CD1 HD11 sing N N 29 LEU CD1 HD12 sing N N 30 LEU CD1 HD13 sing N N 31 LEU CD2 HD21 sing N N 32 LEU CD2 HD22 sing N N 33 LEU CD2 HD23 sing N N 34 LEU OXT HXT sing N N 35 LYS N CA sing N N 36 LYS N H sing N N 37 LYS N H2 sing N N 38 LYS CA C sing N N 39 LYS CA CB sing N N 40 LYS CA HA sing N N 41 LYS C O doub N N 42 LYS C OXT sing N N 43 LYS CB CG sing N N 44 LYS CB HB2 sing N N 45 LYS CB HB3 sing N N 46 LYS CG CD sing N N 47 LYS CG HG2 sing N N 48 LYS CG HG3 sing N N 49 LYS CD CE sing N N 50 LYS CD HD2 sing N N 51 LYS CD HD3 sing N N 52 LYS CE NZ sing N N 53 LYS CE HE2 sing N N 54 LYS CE HE3 sing N N 55 LYS NZ HZ1 sing N N 56 LYS NZ HZ2 sing N N 57 LYS NZ HZ3 sing N N 58 LYS OXT HXT sing N N 59 PHE N CA sing N N 60 PHE N H sing N N 61 PHE N H2 sing N N 62 PHE CA C sing N N 63 PHE CA CB sing N N 64 PHE CA HA sing N N 65 PHE C O doub N N 66 PHE C OXT sing N N 67 PHE CB CG sing N N 68 PHE CB HB2 sing N N 69 PHE CB HB3 sing N N 70 PHE CG CD1 doub Y N 71 PHE CG CD2 sing Y N 72 PHE CD1 CE1 sing Y N 73 PHE CD1 HD1 sing N N 74 PHE CD2 CE2 doub Y N 75 PHE CD2 HD2 sing N N 76 PHE CE1 CZ doub Y N 77 PHE CE1 HE1 sing N N 78 PHE CE2 CZ sing Y N 79 PHE CE2 HE2 sing N N 80 PHE CZ HZ sing N N 81 PHE OXT HXT sing N N 82 TFA C1 C2 sing N N 83 TFA C1 O doub N N 84 TFA C1 OXT sing N N 85 TFA C2 F1 sing N N 86 TFA C2 F2 sing N N 87 TFA C2 F3 sing N N 88 TFA OXT HXT sing N N 89 VAL N CA sing N N 90 VAL N H sing N N 91 VAL N H2 sing N N 92 VAL CA C sing N N 93 VAL CA CB sing N N 94 VAL CA HA sing N N 95 VAL C O doub N N 96 VAL C OXT sing N N 97 VAL CB CG1 sing N N 98 VAL CB CG2 sing N N 99 VAL CB HB sing N N 100 VAL CG1 HG11 sing N N 101 VAL CG1 HG12 sing N N 102 VAL CG1 HG13 sing N N 103 VAL CG2 HG21 sing N N 104 VAL CG2 HG22 sing N N 105 VAL CG2 HG23 sing N N 106 VAL OXT HXT sing N N 107 # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Institute on Aging (NIH/NIA)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number AG074954 _pdbx_audit_support.ordinal 1 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'trifluoroacetic acid' TFA 3 water HOH #