data_8FOF # _entry.id 8FOF # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8FOF pdb_00008fof 10.2210/pdb8fof/pdb WWPDB D_1000271094 ? ? EMDB EMD-29348 ? ? # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'Cryo-EM of BP-ffsy filaments' _pdbx_database_related.db_id EMD-29348 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8FOF _pdbx_database_status.recvd_initial_deposition_date 2022-12-30 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Wang, F.' 1 0000-0003-1008-663X 'Guo, J.' 2 ? 'Egelman, E.H.' 3 ? 'Xu, B.' 4 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nat Nanotechnol' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1748-3395 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 18 _citation.language ? _citation.page_first 1094 _citation.page_last 1104 _citation.title 'Cell spheroid creation by transcytotic intercellular gelation.' _citation.year 2023 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s41565-023-01401-7 _citation.pdbx_database_id_PubMed 37217766 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Guo, J.' 1 ? primary 'Wang, F.' 2 ? primary 'Huang, Y.' 3 ? primary 'He, H.' 4 ? primary 'Tan, W.' 5 ? primary 'Yi, M.' 6 ? primary 'Egelman, E.H.' 7 ? primary 'Xu, B.' 8 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description BP-ffsy _entity.formula_weight 742.816 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(D)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(Z7Z)(DPN)(DPN)(DSN)(DTY)' _entity_poly.pdbx_seq_one_letter_code_can XFFSY _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 Z7Z n 1 2 DPN n 1 3 DPN n 1 4 DSN n 1 5 DTY n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 5 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 8FOF _struct_ref.pdbx_db_accession 8FOF _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 8FOF _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 5 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 8FOF _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 5 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 5 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DPN 'D-peptide linking' . D-PHENYLALANINE ? 'C9 H11 N O2' 165.189 DSN 'D-peptide linking' . D-SERINE ? 'C3 H7 N O3' 105.093 DTY 'D-peptide linking' . D-TYROSINE ? 'C9 H11 N O3' 181.189 Z7Z non-polymer . 'biphenyl-4-carboxylic acid' ? 'C13 H10 O2' 198.217 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8FOF _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.entry_id 8FOF _refine.pdbx_diffrn_id ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low ? _refine.ls_d_res_high . _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.008 ? 2394 ? f_bond_d ? ? 'ELECTRON MICROSCOPY' ? 0.575 ? 3108 ? f_angle_d ? ? 'ELECTRON MICROSCOPY' ? 30.829 ? 546 ? f_dihedral_angle_d ? ? 'ELECTRON MICROSCOPY' ? 0.015 ? 168 ? f_chiral_restr ? ? 'ELECTRON MICROSCOPY' ? 0.002 ? 336 ? f_plane_restr ? ? # _struct.entry_id 8FOF _struct.title 'Cryo-EM of BP-ffsy filaments' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8FOF _struct_keywords.text 'transcytosis, hydrogel, peptides, nanofibers, spheroids, self-assembly peptide filament, PROTEIN FIBRIL' _struct_keywords.pdbx_keywords 'PROTEIN FIBRIL' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A Z7Z 1 C1 ? ? ? 1_555 A DPN 2 N ? ? A Z7Z 1 A DPN 2 1_555 ? ? ? ? ? ? ? 1.428 ? ? covale2 covale both ? A DPN 2 C ? ? ? 1_555 A DPN 3 N ? ? A DPN 2 A DPN 3 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale3 covale both ? A DPN 3 C ? ? ? 1_555 A DSN 4 N ? ? A DPN 3 A DSN 4 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale4 covale both ? A DSN 4 C ? ? ? 1_555 A DTY 5 N ? ? A DSN 4 A DTY 5 1_555 ? ? ? ? ? ? ? 1.325 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _atom_sites.entry_id 8FOF _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_alt_id _atom_site.label_comp_id _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.label_seq_id _atom_site.pdbx_PDB_ins_code _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_seq_id _atom_site.auth_comp_id _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 . Z7Z A 1 1 ? -1.643 12.123 14.325 1.00 42.48 ? 1 Z7Z A C1 1 HETATM 2 O O2 . Z7Z A 1 1 ? -0.905 13.131 14.356 1.00 42.48 ? 1 Z7Z A O2 1 HETATM 3 C C2 . Z7Z A 1 1 ? -1.149 10.796 14.875 1.00 42.48 ? 1 Z7Z A C2 1 HETATM 4 C C3 . Z7Z A 1 1 ? -2.062 9.864 15.317 1.00 42.48 ? 1 Z7Z A C3 1 HETATM 5 C C4 . Z7Z A 1 1 ? -1.629 8.652 15.813 1.00 42.48 ? 1 Z7Z A C4 1 HETATM 6 C C5 . Z7Z A 1 1 ? 0.200 10.520 14.931 1.00 42.48 ? 1 Z7Z A C5 1 HETATM 7 C C6 . Z7Z A 1 1 ? 0.632 9.306 15.427 1.00 42.48 ? 1 Z7Z A C6 1 HETATM 8 C C7 . Z7Z A 1 1 ? -0.282 8.376 15.874 1.00 42.48 ? 1 Z7Z A C7 1 HETATM 9 C C8 . Z7Z A 1 1 ? 0.184 7.032 16.416 1.00 42.48 ? 1 Z7Z A C8 1 HETATM 10 C C9 . Z7Z A 1 1 ? -0.742 6.137 16.913 1.00 42.48 ? 1 Z7Z A C9 1 HETATM 11 C C10 . Z7Z A 1 1 ? 1.522 6.701 16.391 1.00 42.48 ? 1 Z7Z A C10 1 HETATM 12 C C11 . Z7Z A 1 1 ? -0.326 4.912 17.396 1.00 42.48 ? 1 Z7Z A C11 1 HETATM 13 C C12 . Z7Z A 1 1 ? 1.936 5.476 16.874 1.00 42.48 ? 1 Z7Z A C12 1 HETATM 14 C C13 . Z7Z A 1 1 ? 1.013 4.582 17.376 1.00 42.48 ? 1 Z7Z A C13 1 HETATM 15 N N . DPN A 1 2 ? -2.576 13.051 14.879 1.00 41.37 ? 2 DPN A N 1 HETATM 16 C CA . DPN A 1 2 ? -3.181 14.231 14.288 1.00 41.37 ? 2 DPN A CA 1 HETATM 17 C C . DPN A 1 2 ? -4.629 13.952 13.926 1.00 41.37 ? 2 DPN A C 1 HETATM 18 O O . DPN A 1 2 ? -5.453 13.728 14.802 1.00 41.37 ? 2 DPN A O 1 HETATM 19 C CB . DPN A 1 2 ? -3.093 15.413 15.246 1.00 41.37 ? 2 DPN A CB 1 HETATM 20 C CG . DPN A 1 2 ? -3.399 16.727 14.608 1.00 41.37 ? 2 DPN A CG 1 HETATM 21 C CD1 . DPN A 1 2 ? -2.384 17.526 14.136 1.00 41.37 ? 2 DPN A CD1 1 HETATM 22 C CD2 . DPN A 1 2 ? -4.699 17.158 14.469 1.00 41.37 ? 2 DPN A CD2 1 HETATM 23 C CE1 . DPN A 1 2 ? -2.663 18.732 13.545 1.00 41.37 ? 2 DPN A CE1 1 HETATM 24 C CE2 . DPN A 1 2 ? -4.978 18.362 13.875 1.00 41.37 ? 2 DPN A CE2 1 HETATM 25 C CZ . DPN A 1 2 ? -3.961 19.147 13.413 1.00 41.37 ? 2 DPN A CZ 1 HETATM 26 N N . DPN A 1 3 ? -4.937 13.968 12.634 1.00 40.97 ? 3 DPN A N 1 HETATM 27 C CA . DPN A 1 3 ? -6.278 13.686 12.135 1.00 40.97 ? 3 DPN A CA 1 HETATM 28 C C . DPN A 1 3 ? -6.924 14.997 11.713 1.00 40.97 ? 3 DPN A C 1 HETATM 29 O O . DPN A 1 3 ? -6.509 15.612 10.729 1.00 40.97 ? 3 DPN A O 1 HETATM 30 C CB . DPN A 1 3 ? -6.229 12.693 10.979 1.00 40.97 ? 3 DPN A CB 1 HETATM 31 C CG . DPN A 1 3 ? -5.645 11.368 11.353 1.00 40.97 ? 3 DPN A CG 1 HETATM 32 C CD1 . DPN A 1 3 ? -6.462 10.304 11.658 1.00 40.97 ? 3 DPN A CD1 1 HETATM 33 C CD2 . DPN A 1 3 ? -4.281 11.188 11.404 1.00 40.97 ? 3 DPN A CD2 1 HETATM 34 C CE1 . DPN A 1 3 ? -5.928 9.090 12.008 1.00 40.97 ? 3 DPN A CE1 1 HETATM 35 C CE2 . DPN A 1 3 ? -3.747 9.974 11.753 1.00 40.97 ? 3 DPN A CE2 1 HETATM 36 C CZ . DPN A 1 3 ? -4.571 8.926 12.055 1.00 40.97 ? 3 DPN A CZ 1 HETATM 37 N N . DSN A 1 4 ? -7.943 15.417 12.456 1.00 41.20 ? 4 DSN A N 1 HETATM 38 C CA . DSN A 1 4 ? -8.560 16.726 12.272 1.00 41.20 ? 4 DSN A CA 1 HETATM 39 C C . DSN A 1 4 ? -9.913 16.541 11.595 1.00 41.20 ? 4 DSN A C 1 HETATM 40 O O . DSN A 1 4 ? -10.955 16.430 12.234 1.00 41.20 ? 4 DSN A O 1 HETATM 41 C CB . DSN A 1 4 ? -8.688 17.439 13.611 1.00 41.20 ? 4 DSN A CB 1 HETATM 42 O OG . DSN A 1 4 ? -9.348 18.679 13.469 1.00 41.20 ? 4 DSN A OG 1 HETATM 43 N N . DTY A 1 5 ? -9.888 16.522 10.270 1.00 40.61 ? 5 DTY A N 1 HETATM 44 C CA . DTY A 1 5 ? -11.105 16.371 9.491 1.00 40.61 ? 5 DTY A CA 1 HETATM 45 C C . DTY A 1 5 ? -11.925 17.649 9.522 1.00 40.61 ? 5 DTY A C 1 HETATM 46 O O . DTY A 1 5 ? -11.378 18.750 9.465 1.00 30.00 ? 5 DTY A O 1 HETATM 47 C CB . DTY A 1 5 ? -10.775 15.992 8.051 1.00 40.61 ? 5 DTY A CB 1 HETATM 48 C CG . DTY A 1 5 ? -10.093 14.658 7.921 1.00 40.61 ? 5 DTY A CG 1 HETATM 49 C CD1 . DTY A 1 5 ? -10.786 13.483 8.139 1.00 40.61 ? 5 DTY A CD1 1 HETATM 50 C CD2 . DTY A 1 5 ? -8.754 14.573 7.592 1.00 40.61 ? 5 DTY A CD2 1 HETATM 51 C CE1 . DTY A 1 5 ? -10.169 12.266 8.024 1.00 40.61 ? 5 DTY A CE1 1 HETATM 52 C CE2 . DTY A 1 5 ? -8.130 13.360 7.477 1.00 40.61 ? 5 DTY A CE2 1 HETATM 53 C CZ . DTY A 1 5 ? -8.842 12.210 7.694 1.00 40.61 ? 5 DTY A CZ 1 HETATM 54 O OH . DTY A 1 5 ? -8.223 10.994 7.581 1.00 40.61 ? 5 DTY A OH 1 HETATM 55 O OXT . DTY A 1 5 ? -13.150 17.607 9.605 1.00 40.61 ? 5 DTY A OXT 1 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 Z7Z 1 1 1 Z7Z XB5 A . n A 1 2 DPN 2 2 2 DPN DPN A . n A 1 3 DPN 3 3 3 DPN DPN A . n A 1 4 DSN 4 4 4 DSN DSN A . n A 1 5 DTY 5 5 5 DTY DTY A . n # _pdbx_contact_author.id 2 _pdbx_contact_author.email fw2@uab.edu _pdbx_contact_author.name_first Fengbin _pdbx_contact_author.name_last Wang _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0003-1008-663X # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 'representative helical assembly' ? 42-meric 42 2 'helical asymmetric unit' ? monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 '(1-42)' A 2 1 A # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.00000000 -0.00000000 -0.00000000 0.00000 -0.00000000 1.00000000 0.00000000 0.00000 -0.00000000 0.00000000 1.00000000 0.00000 2 'helical symmetry operation' ? ? 0.91665600 -0.39967700 -0.00000000 0.00000 0.39967700 0.91665600 0.00000000 -0.00000 -0.00000000 0.00000000 1.00000000 -14.74200 3 'helical symmetry operation' ? ? 0.85503900 0.51856400 -0.00000000 0.00000 -0.51856400 0.85503900 0.00000000 -0.00000 -0.00000000 0.00000000 1.00000000 -12.63600 4 'helical symmetry operation' ? ? 0.06923400 0.99760000 -0.00000000 0.00000 -0.99760000 0.06923400 0.00000000 -0.00000 -0.00000000 -0.00000000 1.00000000 -10.53000 5 'helical symmetry operation' ? ? -0.77520900 0.63170500 0.00000000 0.00000 -0.63170500 -0.77520900 0.00000000 -0.00000 -0.00000000 -0.00000000 1.00000000 -8.42400 6 'helical symmetry operation' ? ? -0.96307800 -0.26922200 -0.00000000 0.00000 0.26922200 -0.96307800 -0.00000000 -0.00000 0.00000000 0.00000000 1.00000000 -6.31800 7 'helical symmetry operation' ? ? -0.33525400 -0.94212800 -0.00000000 -0.00000 0.94212800 -0.33525400 -0.00000000 -0.00000 -0.00000000 0.00000000 1.00000000 -4.21200 8 'helical symmetry operation' ? ? 0.57651800 -0.81708500 -0.00000000 -0.00000 0.81708500 0.57651800 0.00000000 -0.00000 -0.00000000 0.00000000 1.00000000 -2.10600 9 'helical symmetry operation' ? ? 0.57651800 0.81708500 -0.00000000 0.00000 -0.81708500 0.57651800 0.00000000 -0.00000 -0.00000000 0.00000000 1.00000000 2.10600 10 'helical symmetry operation' ? ? -0.33525400 0.94212800 -0.00000000 0.00000 -0.94212800 -0.33525400 0.00000000 -0.00000 -0.00000000 -0.00000000 1.00000000 4.21200 11 'helical symmetry operation' ? ? -0.96307800 0.26922200 0.00000000 -0.00000 -0.26922200 -0.96307800 0.00000000 -0.00000 -0.00000000 -0.00000000 1.00000000 6.31800 12 'helical symmetry operation' ? ? -0.77520900 -0.63170500 -0.00000000 -0.00000 0.63170500 -0.77520900 -0.00000000 -0.00000 0.00000000 0.00000000 1.00000000 8.42400 13 'helical symmetry operation' ? ? 0.06923400 -0.99760000 -0.00000000 -0.00000 0.99760000 0.06923400 -0.00000000 -0.00000 -0.00000000 0.00000000 1.00000000 10.53000 14 'helical symmetry operation' ? ? 0.85503900 -0.51856400 -0.00000000 -0.00000 0.51856400 0.85503900 0.00000000 0.00000 -0.00000000 0.00000000 1.00000000 12.63600 15 'helical symmetry operation' ? ? -0.80445900 -0.59400900 -0.00000000 0.00000 0.59400900 -0.80445900 -0.00000000 -0.00000 0.00000000 0.00000000 1.00000000 -14.74200 16 'helical symmetry operation' ? ? 0.02157100 -0.99976700 -0.00000000 -0.00000 0.99976700 0.02157100 -0.00000000 -0.00000 -0.00000000 0.00000000 1.00000000 -12.63600 17 'helical symmetry operation' ? ? 0.82933000 -0.55875900 -0.00000000 -0.00000 0.55875900 0.82933000 0.00000000 -0.00000 -0.00000000 0.00000000 1.00000000 -10.53000 18 'helical symmetry operation' ? ? 0.93467700 0.35549900 -0.00000000 0.00000 -0.35549900 0.93467700 0.00000000 -0.00000 -0.00000000 0.00000000 1.00000000 -8.42400 19 'helical symmetry operation' ? ? 0.24838600 0.96866100 -0.00000000 0.00000 -0.96866100 0.24838600 0.00000000 -0.00000 -0.00000000 -0.00000000 1.00000000 -6.31800 20 'helical symmetry operation' ? ? -0.64827900 0.76140300 0.00000000 0.00000 -0.76140300 -0.64827900 0.00000000 -0.00000 -0.00000000 -0.00000000 1.00000000 -4.21200 21 'helical symmetry operation' ? ? -0.99587500 -0.09073700 -0.00000000 0.00000 0.09073700 -0.99587500 -0.00000000 -0.00000 0.00000000 0.00000000 1.00000000 -2.10600 22 'helical symmetry operation' ? ? -0.50000000 -0.86602500 -0.00000000 -0.00000 0.86602500 -0.50000000 -0.00000000 -0.00000 0.00000000 0.00000000 1.00000000 -0.00000 23 'helical symmetry operation' ? ? 0.41935700 -0.90782100 -0.00000000 -0.00000 0.90782100 0.41935700 0.00000000 -0.00000 -0.00000000 0.00000000 1.00000000 2.10600 24 'helical symmetry operation' ? ? 0.98353400 -0.18072500 -0.00000000 -0.00000 0.18072500 0.98353400 0.00000000 0.00000 -0.00000000 0.00000000 1.00000000 4.21200 25 'helical symmetry operation' ? ? 0.71469200 0.69943900 -0.00000000 0.00000 -0.69943900 0.71469200 0.00000000 -0.00000 -0.00000000 0.00000000 1.00000000 6.31800 26 'helical symmetry operation' ? ? -0.15946800 0.98720300 -0.00000000 0.00000 -0.98720300 -0.15946800 0.00000000 -0.00000 -0.00000000 -0.00000000 1.00000000 8.42400 27 'helical symmetry operation' ? ? -0.89856400 0.43884200 0.00000000 -0.00000 -0.43884200 -0.89856400 0.00000000 -0.00000 -0.00000000 -0.00000000 1.00000000 10.53000 28 'helical symmetry operation' ? ? -0.87660900 -0.48120300 -0.00000000 -0.00000 0.48120300 -0.87660900 -0.00000000 -0.00000 0.00000000 0.00000000 1.00000000 12.63600 29 'helical symmetry operation' ? ? -0.11219700 0.99368600 -0.00000000 0.00000 -0.99368600 -0.11219700 0.00000000 -0.00000 -0.00000000 -0.00000000 1.00000000 -14.74200 30 'helical symmetry operation' ? ? -0.87660900 0.48120300 0.00000000 0.00000 -0.48120300 -0.87660900 0.00000000 -0.00000 -0.00000000 -0.00000000 1.00000000 -12.63600 31 'helical symmetry operation' ? ? -0.89856400 -0.43884200 -0.00000000 0.00000 0.43884200 -0.89856400 -0.00000000 -0.00000 0.00000000 0.00000000 1.00000000 -10.53000 32 'helical symmetry operation' ? ? -0.15946800 -0.98720300 -0.00000000 -0.00000 0.98720300 -0.15946800 -0.00000000 -0.00000 -0.00000000 0.00000000 1.00000000 -8.42400 33 'helical symmetry operation' ? ? 0.71469200 -0.69943900 -0.00000000 -0.00000 0.69943900 0.71469200 0.00000000 -0.00000 -0.00000000 0.00000000 1.00000000 -6.31800 34 'helical symmetry operation' ? ? 0.98353400 0.18072500 -0.00000000 0.00000 -0.18072500 0.98353400 0.00000000 -0.00000 -0.00000000 0.00000000 1.00000000 -4.21200 35 'helical symmetry operation' ? ? 0.41935700 0.90782100 -0.00000000 0.00000 -0.90782100 0.41935700 0.00000000 -0.00000 -0.00000000 0.00000000 1.00000000 -2.10600 36 'helical symmetry operation' ? ? -0.50000000 0.86602500 0.00000000 0.00000 -0.86602500 -0.50000000 0.00000000 -0.00000 -0.00000000 -0.00000000 1.00000000 -0.00000 37 'helical symmetry operation' ? ? -0.99587500 0.09073700 0.00000000 -0.00000 -0.09073700 -0.99587500 0.00000000 -0.00000 -0.00000000 -0.00000000 1.00000000 2.10600 38 'helical symmetry operation' ? ? -0.64827900 -0.76140300 -0.00000000 -0.00000 0.76140300 -0.64827900 -0.00000000 -0.00000 0.00000000 0.00000000 1.00000000 4.21200 39 'helical symmetry operation' ? ? 0.24838600 -0.96866100 -0.00000000 -0.00000 0.96866100 0.24838600 -0.00000000 -0.00000 -0.00000000 0.00000000 1.00000000 6.31800 40 'helical symmetry operation' ? ? 0.93467700 -0.35549900 -0.00000000 -0.00000 0.35549900 0.93467700 0.00000000 0.00000 -0.00000000 0.00000000 1.00000000 8.42400 41 'helical symmetry operation' ? ? 0.82933000 0.55875900 -0.00000000 0.00000 -0.55875900 0.82933000 0.00000000 0.00000 -0.00000000 0.00000000 1.00000000 10.53000 42 'helical symmetry operation' ? ? 0.02157100 0.99976700 -0.00000000 0.00000 -0.99976700 0.02157100 0.00000000 -0.00000 -0.00000000 -0.00000000 1.00000000 12.63600 # _pdbx_helical_symmetry.entry_id 8FOF _pdbx_helical_symmetry.number_of_operations 14 _pdbx_helical_symmetry.rotation_per_n_subunits -54.79 _pdbx_helical_symmetry.rise_per_n_subunits 2.11 _pdbx_helical_symmetry.n_subunits_divisor 1 _pdbx_helical_symmetry.dyad_axis no _pdbx_helical_symmetry.circular_symmetry 3 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2023-05-31 2 'Structure model' 1 1 2023-06-07 3 'Structure model' 1 2 2023-09-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 3 'Structure model' chem_comp_atom 3 3 'Structure model' chem_comp_bond 4 3 'Structure model' citation # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.pdbx_database_id_PubMed' 2 2 'Structure model' '_citation.title' 3 3 'Structure model' '_citation.journal_volume' 4 3 'Structure model' '_citation.page_first' 5 3 'Structure model' '_citation.page_last' # _software.citation_id ? _software.classification refinement _software.compiler_name ? _software.compiler_version ? _software.contact_author ? _software.contact_author_email ? _software.date ? _software.description ? _software.dependencies ? _software.hardware ? _software.language ? _software.location ? _software.mods ? _software.name PHENIX _software.os ? _software.os_version ? _software.type ? _software.version 1.18.2_3874: _software.pdbx_ordinal 1 # _pdbx_entry_details.entry_id 8FOF _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 8FOF _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space ? _em_3d_fitting.ref_protocol ? # _em_3d_reconstruction.entry_id 8FOF _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 2.6 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 757253 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type HELICAL # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details ? _em_buffer.pH 7.4 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source NATURAL _em_entity_assembly.type COMPLEX _em_entity_assembly.name BP-ffsy _em_entity_assembly.details ? _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list 1 # _em_imaging.entry_id 8FOF _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model ? _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_min 1000 _em_imaging.nominal_defocus_max 2000 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification ? _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.specimen_id 1 _em_imaging.cryogen ? # _em_vitrification.entry_id 8FOF _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity ? _em_vitrification.temp ? _em_vitrification.chamber_temperature ? _em_vitrification.instrument ? _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ? # _em_experiment.entry_id 8FOF _em_experiment.id 1 _em_experiment.reconstruction_method HELICAL _em_experiment.aggregation_state FILAMENT _em_experiment.entity_assembly_id 1 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O2 _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 Z7Z _pdbx_validate_close_contact.auth_seq_id_1 1 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 N _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 DPN _pdbx_validate_close_contact.auth_seq_id_2 2 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 1.75 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DPN N N N N 1 DPN CA C N R 2 DPN C C N N 3 DPN O O N N 4 DPN OXT O N N 5 DPN CB C N N 6 DPN CG C Y N 7 DPN CD1 C Y N 8 DPN CD2 C Y N 9 DPN CE1 C Y N 10 DPN CE2 C Y N 11 DPN CZ C Y N 12 DPN H H N N 13 DPN H2 H N N 14 DPN HA H N N 15 DPN HXT H N N 16 DPN HB2 H N N 17 DPN HB3 H N N 18 DPN HD1 H N N 19 DPN HD2 H N N 20 DPN HE1 H N N 21 DPN HE2 H N N 22 DPN HZ H N N 23 DSN N N N N 24 DSN CA C N R 25 DSN C C N N 26 DSN O O N N 27 DSN OXT O N N 28 DSN CB C N N 29 DSN OG O N N 30 DSN H H N N 31 DSN H2 H N N 32 DSN HA H N N 33 DSN HXT H N N 34 DSN HB2 H N N 35 DSN HB3 H N N 36 DSN HG H N N 37 DTY N N N N 38 DTY CA C N R 39 DTY C C N N 40 DTY O O N N 41 DTY CB C N N 42 DTY CG C Y N 43 DTY CD1 C Y N 44 DTY CD2 C Y N 45 DTY CE1 C Y N 46 DTY CE2 C Y N 47 DTY CZ C Y N 48 DTY OH O N N 49 DTY OXT O N N 50 DTY H H N N 51 DTY H2 H N N 52 DTY HA H N N 53 DTY HB2 H N N 54 DTY HB3 H N N 55 DTY HD1 H N N 56 DTY HD2 H N N 57 DTY HE1 H N N 58 DTY HE2 H N N 59 DTY HH H N N 60 DTY HXT H N N 61 Z7Z O1 O N N 62 Z7Z C1 C N N 63 Z7Z O2 O N N 64 Z7Z C2 C Y N 65 Z7Z C3 C Y N 66 Z7Z C4 C Y N 67 Z7Z C5 C Y N 68 Z7Z C6 C Y N 69 Z7Z C7 C Y N 70 Z7Z C8 C Y N 71 Z7Z C9 C Y N 72 Z7Z C10 C Y N 73 Z7Z C11 C Y N 74 Z7Z C12 C Y N 75 Z7Z C13 C Y N 76 Z7Z H1O H N N 77 Z7Z H31 H N N 78 Z7Z H41 H N N 79 Z7Z H51 H N N 80 Z7Z H61 H N N 81 Z7Z H91 H N N 82 Z7Z H101 H N N 83 Z7Z H111 H N N 84 Z7Z H121 H N N 85 Z7Z H131 H N N 86 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DPN N CA sing N N 1 DPN N H sing N N 2 DPN N H2 sing N N 3 DPN CA C sing N N 4 DPN CA CB sing N N 5 DPN CA HA sing N N 6 DPN C O doub N N 7 DPN C OXT sing N N 8 DPN OXT HXT sing N N 9 DPN CB CG sing N N 10 DPN CB HB2 sing N N 11 DPN CB HB3 sing N N 12 DPN CG CD1 doub Y N 13 DPN CG CD2 sing Y N 14 DPN CD1 CE1 sing Y N 15 DPN CD1 HD1 sing N N 16 DPN CD2 CE2 doub Y N 17 DPN CD2 HD2 sing N N 18 DPN CE1 CZ doub Y N 19 DPN CE1 HE1 sing N N 20 DPN CE2 CZ sing Y N 21 DPN CE2 HE2 sing N N 22 DPN CZ HZ sing N N 23 DSN N CA sing N N 24 DSN N H sing N N 25 DSN N H2 sing N N 26 DSN CA C sing N N 27 DSN CA CB sing N N 28 DSN CA HA sing N N 29 DSN C O doub N N 30 DSN C OXT sing N N 31 DSN OXT HXT sing N N 32 DSN CB OG sing N N 33 DSN CB HB2 sing N N 34 DSN CB HB3 sing N N 35 DSN OG HG sing N N 36 DTY N CA sing N N 37 DTY N H sing N N 38 DTY N H2 sing N N 39 DTY CA C sing N N 40 DTY CA CB sing N N 41 DTY CA HA sing N N 42 DTY C O doub N N 43 DTY C OXT sing N N 44 DTY CB CG sing N N 45 DTY CB HB2 sing N N 46 DTY CB HB3 sing N N 47 DTY CG CD1 doub Y N 48 DTY CG CD2 sing Y N 49 DTY CD1 CE1 sing Y N 50 DTY CD1 HD1 sing N N 51 DTY CD2 CE2 doub Y N 52 DTY CD2 HD2 sing N N 53 DTY CE1 CZ doub Y N 54 DTY CE1 HE1 sing N N 55 DTY CE2 CZ sing Y N 56 DTY CE2 HE2 sing N N 57 DTY CZ OH sing N N 58 DTY OH HH sing N N 59 DTY OXT HXT sing N N 60 Z7Z O1 C1 sing N N 61 Z7Z O1 H1O sing N N 62 Z7Z C1 O2 doub N N 63 Z7Z C1 C2 sing N N 64 Z7Z C2 C3 doub Y N 65 Z7Z C2 C5 sing Y N 66 Z7Z C3 C4 sing Y N 67 Z7Z C3 H31 sing N N 68 Z7Z C4 C7 doub Y N 69 Z7Z C4 H41 sing N N 70 Z7Z C5 C6 doub Y N 71 Z7Z C5 H51 sing N N 72 Z7Z C6 C7 sing Y N 73 Z7Z C6 H61 sing N N 74 Z7Z C7 C8 sing N N 75 Z7Z C8 C9 doub Y N 76 Z7Z C8 C10 sing Y N 77 Z7Z C9 C11 sing Y N 78 Z7Z C9 H91 sing N N 79 Z7Z C10 C12 doub Y N 80 Z7Z C10 H101 sing N N 81 Z7Z C11 C13 doub Y N 82 Z7Z C11 H111 sing N N 83 Z7Z C12 C13 sing Y N 84 Z7Z C12 H121 sing N N 85 Z7Z C13 H131 sing N N 86 # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 32630 _em_entity_assembly_naturalsource.organism 'synthetic construct' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? # _em_helical_entity.id 1 _em_helical_entity.image_processing_id 1 _em_helical_entity.details ? _em_helical_entity.axial_symmetry C3 _em_helical_entity.angular_rotation_per_subunit -54.79 _em_helical_entity.axial_rise_per_subunit 2.11 # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time ? _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 50 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 (6k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version 'PARTICLE SELECTION' ? 1 1 ? ? ? ? 'IMAGE ACQUISITION' ? 2 ? ? 1 ? ? MASKING ? 3 ? ? ? ? ? 'CTF CORRECTION' ? 4 1 ? ? ? ? 'LAYERLINE INDEXING' ? 5 ? ? ? ? ? 'DIFFRACTION INDEXING' ? 6 ? ? ? ? ? 'MODEL FITTING' ? 7 ? ? ? ? ? 'MODEL REFINEMENT' ? 8 ? ? ? ? ? OTHER ? 9 ? ? ? ? ? 'INITIAL EULER ASSIGNMENT' ? 10 1 ? ? ? ? 'FINAL EULER ASSIGNMENT' ? 11 1 ? ? ? ? CLASSIFICATION ? 12 1 ? ? ? ? RECONSTRUCTION ? 13 1 ? ? ? ? # _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' GM122510 1 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' GM138756 2 'National Institutes of Health/National Cancer Institute (NIH/NCI)' 'United States' CA142746 3 'National Science Foundation (NSF, United States)' 'United States' DMR-2011846 4 # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support microscopy _pdbx_struct_assembly_auth_evidence.details ? #