0.005556
0.000000
0.000000
0.000000
0.017353
0.000000
0.000000
0.000000
0.020689
0.00000
0.00000
0.00000
Pelletier, H.
Sawaya, M.R.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
179.972
57.628
48.334
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H16 N5 O12 P3
491.182
2'-DEOXYADENOSINE 5'-TRIPHOSPHATE
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Na 1
22.990
SODIUM ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Zn 2
65.409
ZINC ION
non-polymer
US
Biochemistry
BICHAW
0033
0006-2960
35
12762
12777
10.1021/bi9529566
8841119
A structural basis for metal ion mutagenicity and nucleotide selectivity in human DNA polymerase beta
1996
To be Published
0353
Crystal Structures of Human DNA Polymerase Beta Complexed with Nicked and Gapped DNA Substrates
To be Published
0353
The Role of Thumb Movement and Template Bending in Polymerase Fidelity
US
Biochemistry
BICHAW
0033
0006-2960
35
12742
Crystal Structures of Human DNA Polymerase Beta Complexed with DNA; Implications for Catalytic Mechanism, Processivity, and Fidelity
1996
US
Biochemistry
BICHAW
0033
0006-2960
35
12778
Characterization of the Metal Ion-Binding HHH Motifs in Human DNA Polymerase Beta by X-Ray Structural Analysis
1996
US
Science
SCIEAS
0038
0036-8075
266
2025
Polymerase Structures and Mechanism
1994
US
Science
SCIEAS
0038
0036-8075
264
1891
Structures of Ternary Complexes of Rat DNA Polymerase Beta, a DNA Template- Primer, and ddCTP
1994
US
Science
SCIEAS
0038
0036-8075
264
1930
Crystal Structure of Rat DNA Polymerase Beta: Evidence for a Common Polymerase Mechanism
1994
10.2210/pdb9icv/pdb
pdb_00009icv
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
298.00
1
AREA DETECTOR
1995-05-01
SDMS
GRAPHITE
SINGLE WAVELENGTH
M
x-ray
1
1.0
ROTATING ANODE
RIGAKU RU200
2434.643
DNA (5'-D(*CP*AP*TP*TP*AP*GP*AP*A)-3')
1
syn
polymer
2425.629
DNA (5'-D(*TP*CP*TP*AP*AP*TP*GP*A)-3')
1
syn
polymer
38241.672
PROTEIN (DNA POLYMERASE BETA (E.C.2.7.7.7))
1
man
polymer
65.409
ZINC ION
3
syn
non-polymer
22.990
SODIUM ION
2
syn
non-polymer
491.182
2'-DEOXYADENOSINE 5'-TRIPHOSPHATE
1
syn
non-polymer
18.015
water
142
nat
water
no
no
(DC)(DA)(DT)(DT)(DA)(DG)(DA)(DA)
CATTAGAA
T
polydeoxyribonucleotide
no
no
(DT)(DC)(DT)(DA)(DA)(DT)(DG)(DA)
TCTAATGA
P
polydeoxyribonucleotide
no
no
MSKRKAPQETLNGGITDMLTELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIAEKIDEFLATG
KLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNEDKLNHHQRIGLKYFGDFEKRIPREEMLQMQD
IVLNEVKKVDSEYIATVCGSFRRGAESSGDMDVLLTHPSFTSESTKQPKLLHQVVEQLQKVHFITDTLSKGETKFMGVCQ
LPSKNDEKEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPLGVTGVAGEPLPVDSEKDIF
DYIQWKYREPKDRSE
MSKRKAPQETLNGGITDMLTELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIAEKIDEFLATG
KLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNEDKLNHHQRIGLKYFGDFEKRIPREEMLQMQD
IVLNEVKKVDSEYIATVCGSFRRGAESSGDMDVLLTHPSFTSESTKQPKLLHQVVEQLQKVHFITDTLSKGETKFMGVCQ
LPSKNDEKEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPLGVTGVAGEPLPVDSEKDIF
DYIQWKYREPKDRSE
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
Escherichia
sample
9606
Homo sapiens
562
Escherichia coli
1
3.00
58.4000
6.5
THIS ENTRY DESCRIBES THE STRUCTURE THAT RESULTED WHEN A COCRYSTAL OF HUMAN DNA POLYMERASE BETA COMPLEXED WITH 7 BASE PAIRS OF DNA (SEE ENTRY 9ICJ AND REFERENCE 1) HAD BEEN SOAKED IN THE FOLLOWING SOLUTION FOR 24 HOURS: PEG 3350, 16% MES, 100 MILLIMOLAR, PH 6.5 NACL, 150 MILLIMOLAR DATP, 0.1 MILLIMOLAR ZNCL2, 0.2 MILLIMOLAR SEE REFERENCE 2 FOR DETAILS CONCERNING EXPERIMENTAL PROCEDURES, RESULTS, AND DISCUSSION FOR THIS STRUCTURE.
4.931
T
1
P
7
12.445
T_DC1:DG7_P
1
-14.746
1.203
-1.525
0.014
-5.927
1
20
T
2
P
6
6.747
T_DA2:DT6_P
2
-7.875
0.401
0.092
-0.240
-1.775
1
20
T
3
P
5
5.802
T_DT3:DA5_P
3
-12.698
-0.610
0.547
-0.210
-2.587
1
20
T
4
P
4
14.405
T_DT4:DA4_P
4
-13.721
-0.454
0.422
-0.527
-0.326
1
20
T
5
P
3
1.801
T_DA5:DT3_P
5
-13.950
0.399
0.004
-0.522
-3.769
1
19
T
6
P
2
3.779
T_DG6:DC2_P
6
-8.703
-0.918
-0.189
-0.778
14.426
1
20
T
7
P
1
0.064
T_DA7:DT1_P
7
-7.215
-0.372
0.129
-0.349
3.919
25.955
T
T
1
2
20.061
P
P
7
6
3.972
8.525
-1.030
0.418
TT_DC1DA2:DT6DG7_PP
1
-11.436
26.909
21.740
-2.168
-1.863
3.170
28.997
T
T
2
3
5.367
P
P
6
5
3.208
2.683
0.106
-0.186
TT_DA2DT3:DA5DT6_PP
2
-1.355
2.710
28.844
-0.950
-0.504
2.959
40.893
T
T
3
4
20.711
P
P
5
4
3.279
14.194
0.113
-0.394
TT_DT3DT4:DA4DA5_PP
3
-0.178
0.260
38.450
-2.099
-0.181
3.313
39.315
T
T
4
5
4.040
P
P
4
3
3.278
2.716
-0.651
0.523
TT_DT4DA5:DT3DA4_PP
4
-0.502
0.746
39.222
0.452
0.908
3.194
20.103
T
T
5
6
15.466
P
P
3
2
3.403
5.330
-0.002
-0.303
TT_DA5DG6:DC2DT3_PP
5
-1.574
4.567
19.328
-3.399
-0.742
3.254
34.265
T
T
6
7
3.843
P
P
2
1
3.163
2.250
-0.611
0.619
TT_DG6DA7:DT1DC2_PP
6
-6.377
10.891
33.611
0.700
0.043
database_2
pdbx_initial_refinement_model
pdbx_struct_conn_angle
struct_conn
struct_site
repository
Initial release
Version format compliance
Version format compliance
Database references
Derived calculations
Refinement description
1
0
1996-11-15
1
1
2008-05-22
1
2
2011-07-13
1
3
2023-08-02
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_asym_id
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr2_auth_comp_id
_pdbx_struct_conn_angle.ptnr2_auth_seq_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr2_label_atom_id
_pdbx_struct_conn_angle.ptnr2_label_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_symmetry
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE PRESENCE OF CACL2
DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF CDCL2 (0.1 MILLIMOLAR) (FOUR-DAY SOAK)
DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE PRESENCE OF CDCL2
DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE PRESENCE OF COCL2
DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF CRCL3 (0.1 MILLIMOLAR)
DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF CUCL2 (0.1 MILLIMOLAR)
DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE PRESENCE OF MGCL2
DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF MNCL2 (0.1 MILLIMOLAR)
DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF MNCL2 (1.0 MILLIMOLAR)
DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE PRESENCE OF NICL2
DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE PRESENCE OF ZNCL2
DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF ZNCL2 (0.01 MILLIMOLAR)
DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE PRESENCE OF ZNCL2
DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE PRESENCE OF ZNCL2
DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE PRESENCE OF ZNCL2
DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE PRESENCE OF ZNCL2 AND MGCL2
DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF CDCL2 (0.1 MILLIMOLAR)
DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF MNCL2 (0.1 MILLIMOLAR) AND IN THE ABSENCE OF NACL
DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF DATP (1 MILLIMOLAR) AND CACL2 (5 MILLIMOLAR)
DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF ARTIFICIAL MOTHER LIQUOR
DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA (NO 5'-PHOSPHATE)
DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF DATP (1 MILLIMOLAR) AND CDCL2 (1 MILLIMOLAR)
DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF DATP (10 MILLIMOLAR) AND MGCL2 (50 MILLIMOLAR)
DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF DATP (1 MILLIMOLAR) AND MGCL2 (5 MILLIMOLAR)
DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF DCTP (1 MILLIMOLAR) AND MGCL2 (5 MILLIMOLAR)
DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF DGTP (1 MILLIMOLAR) AND MGCL2 (5 MILLIMOLAR)
DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + THYMIDINE-5'-TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DTTP AND MGCL2
DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF DATP (1 MILLIMOLAR), MGCL2 (5 MILLIMOLAR), AND MNCL2 (5 MILLIMOLAR)
DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF DATP (1 MILLIMOLAR) AND NICL2 (5 MILLIMOLAR)
DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF DATP (1 MILLIMOLAR), MNCL2 (5 MILLIMOLAR), AND AMMONIUM SULFATE (75 MILLIMOLAR)
DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF ATP (1 MILLIMOLAR) AND MNCL2 (5 MILLIMOLAR)
DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF AZT-TP (1 MILLIMOLAR) AND MNCL2 (5 MILLIMOLAR)
DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF DATP (1 MILLIMOLAR) AND MNCL2 (5 MILLIMOLAR)
DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF OF DATP (0.1 MILLIMOLAR) AND MNCL2 (0.5 MILLIMOLAR)
DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF DATP (1 MILLIMOLAR) AND MNCL2 (5 MILLIMOLAR)
DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF DCTP (1 MILLIMOLAR) AND MNCL2 (5 MILLIMOLAR)
DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF DCTP (1 MILLIMOLAR) AND MNCL2 (5 MILLIMOLAR)
DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF DDATP (1 MILLIMOLAR) AND MNCL2 (5 MILLIMOLAR)
DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF DGTP (1 MILLIMOLAR) AND MNCL2 (5 MILLIMOLAR)
DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF DTTP (1 MILLIMOLAR) AND MNCL2 (5 MILLIMOLAR)
DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF DTTP (1 MILLIMOLAR) AND MNCL2 (5 MILLIMOLAR)
DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + THYMIDINE-5'-TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DTTP AND MNCL2
DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF OF DATP (1 MILLIMOLAR), MNCL2 (5 MILLIMOLAR), AND LITHIUM SULFATE (75 MILLIMOLAR)
DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + 2'-DEOXYADENOSINE-5'-O-(1-THIOTRIPHOSPHATE), SOAKED IN THE PRESENCE OF DATP(ALPHA)S AND MNCL2
DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + 2'-DEOXYADENOSINE-5'-TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DATP AND COCL2
DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + 2'-DEOXYADENOSINE-5'-TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DATP AND CRCL3
DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF DATP (1 MILLIMOLAR) AND CUCL2 (0.1 MILLIMOLAR)
DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + 2'-DEOXYADENOSINE-5'-TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DATP AND ZNCL2
DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF DCTP (1 MILLIMOLAR) AND ZNCL2 (1 MILLIMOLAR)
DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF DGTP (1 MILLIMOLAR) AND ZNCL2 (1 MILLIMOLAR)
DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF DTTP (1 MILLIMOLAR) AND ZNCL2 (1 MILLIMOLAR)
DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA
DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE PRESENCE OF ARTIFICIAL MOTHER LIQUOR
DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE PRESENCE OF PYROPHOSPHATE AND MNCL2
DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE PAIRS OF DOUBLE STRANDED DNA (NO 5'-PHOSPHATE)
DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + 2',3'-DIDEOXYCYTIDINE-5'-TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DDCTP AND MGCL2
DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE PRESENCE OF DTTP AND MGCL2
DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF PYROPHOSPHATE (1 MILLIMOLAR) AND MGCL2 (5 MILLIMOLAR)
DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF DATP (1 MILLIMOLAR) AND MNCL2 (5 MILLIMOLAR)
DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DCTP AND MNCL2
DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + 2',3'-DIDEOXYCYTIDINE-5'-TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DDCTP AND MNCL2
DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DGTP AND MNCL2
DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF DTTP (1 MILLIMOLAR) AND MNCL2 (5 MILLIMOLAR)
DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE PAIRS OF DNA; NATIVE STRUCTURE
DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE PAIRS OF DNA (NON GAPPED DNA ONLY)
DNA POLYMERASE BETA (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA (NON GAPPED DNA ONLY)
DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF KCL (150 MILLIMOLAR) AT PH 7.5
DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF BACL2 (150 MILLIMOLAR)
DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF CACL2 (15 MILLIMOLAR)
DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF CACL2 (150 MILLIMOLAR)
DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF CRCL3 (SATURATED SOLUTION)
DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF CSCL (150 MILLIMOLAR)
DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF A SODIUM-FREE ARTIFICIAL MOTHER LIQUOR AT PH 6.5
DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF A SODIUM-FREE ARTIFICIAL MOTHER LIQUOR AT PH 7.5
DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF KCL (150 MILLIMOLAR)
DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF CACL2 (15 MILLIMOLAR) AND MGCL2 (15 MILLIMOLAR)
DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF KCL (75 MILLIMOLAR) AND MGCL2 (75 MILLIMOLAR)
DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF MNCL2 (15 MILLIMOLAR) AND MGCL2 (15 MILLIMOLAR)
DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF MNCL2 (15 MILLIMOLAR)
DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF BACL2 (15 MILLIMOLAR) AND NACL (15 MILLIMOLAR)
DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF CACL2 (15 MILLIMOLAR) AND NACL (15 MILLIMOLAR)
DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF KCL (75 MILLIMOLAR) AND NACL (75 MILLIMOLAR)
DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF MNCL2 (15 MILLIMOLAR) AND NACL (15 MILLIMOLAR)
DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE PRESENCE OF NICL2
DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF TLCL (0.5 MILLIMOLAR)
DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF DATP (0.01 MILLIMOLAR) AND ZNCL2 (0.02 MILLIMOLAR)
BNL
Y
NDB
1995-12-16
REL
REL
ZN
ZINC ION
NA
SODIUM ION
DTP
2'-DEOXYADENOSINE 5'-TRIPHOSPHATE
HOH
water
A POSSIBLE PHYSIOLOGICAL SUBSTRATE FOR POL BETA IS A DNA
GAP, WHERE THE LENGTH OF THE GAP CAN RANGE FROM ONE TO SIX
NUCLEOTIDES, AND THE DOWNSTREAM END OF THE DNA GAP IS
5'-PHOSPHORYLATED. IN ORDER TO CREATE VARIOUS GAPPED-DNA
SUBSTRATES FOR USE IN POL BETA-DNA CO-CRYSTALLIZATION
ATTEMPTS, THE AUTHORS HAD TO ANNEAL THREE DIFFERENT
OLIGONUCLEOTIDES TOGETHER PRIOR TO CRYSTALLIZATION:
(1) A RELATIVELY LONG (14 TO 20 MER) OLIGONUCLEOTIDE THAT
WAS TO SERVE AS THE TEMPLATE, (2) ONE SHORTER (5 OR 6 MER)
OLIGONUCLEOTIDE THAT WAS TO SERVE AS THE PRIMER, AND (3)
ANOTHER SHORTER (4 TO 10 MER) OLIGONUCLEOTIDE THAT WAS
5'-PHOSPHORYLATED AND WAS TO SERVE AS THE DOWNSTREAM
OLIGONUCLEOTIDE. DNA SEQUENCES CORRESPONDING TO THE
TEMPLATE, THE PRIMER, AND THE DOWNSTREAM OLIGONUCLEOTIDE
FOR THE CRYSTAL STRUCTURE PRESENTED HERE ARE:
5'-CATTAGAAAGGGAAGCGCCG-3' (20-MER), 5'-CGGCGC-3' (6-MER),
AND 5'-PO4-TCTAATG-3' (7-MER), RESPECTIVELY, WHERE "5'-PO4"
INDICATES THAT THE 5' TERMINUS OF THIS OLIGONUCLEOTIDE IS
5'-PHOSPHORYLATED. HOWEVER, AN UNEXPECTED POL BETA-DNA
COMPLEX RESULTED FROM THE CO-CRYSTALLIZATION ATTEMPTS SO
THAT WHAT WAS ORIGINALLY INTENDED TO BE THE
5'-PHOSPHORYLATED DOWNSTREAM OLIGONUCLEOTIDE IS BOUND
WHERE THE PRIMER STRAND WAS EXPECTED TO BIND (SEE REFERENCE
1). IN ADDITION, A MAJORITY OF THE GAPPED-DNA SUBSTRATE
(THAT IS, SIX BASE PAIRS OF TEMPLATE-PRIMER TETHERED TO A
FLEXIBLE, SINGLE-STRANDED DNA GAP) IS TOO DISORDERED TO BE
OBSERVABLE IN THE CRYSTAL STRUCTURE, ALTHOUGH IT IS
NEVERTHELESS THOUGHT TO BE PRESENT IN THE CRYSTAL LATTICE
(SEE REFERENCE 1). THE END RESULT IS THAT, ALTHOUGH THE
AFOREMENTIONED TEMPLATE IS STILL REFERRED TO AS THE
TEMPLATE IN THE STRUCTURES PRESENTED HERE, THE
AFOREMENTIONED "DOWNSTREAM OLIGONUCLEOTIDE" IS NOW CALLED
THE "PRIMER" -- BY ANALOGY WITH PREVIOUSLY REPORTED POL
BETA-DNA-DDCTP TERNARY COMPLEX STRUCTURES (SEE ENTRIES
2BPF AND 2BPG AND REFERENCE 8). ONLY THE DNA NUCLEOTIDES
THAT WERE VISIBLE IN THE STRUCTURE ARE INCLUDED IN THE
SEQRES SECTION BELOW.
8ICB
PDB
experimental model
ZN
339
4
ZN
ZN
339
A
ZN
340
4
ZN
ZN
340
A
NA
341
5
NA
NA
341
A
NA
342
5
NA
NA
342
A
ZN
343
4
ZN
ZN
343
A
DTP
338
6
DTP
DTP
338
A
HOH
517
7
HOH
HOH
517
T
HOH
525
7
HOH
HOH
525
T
HOH
527
7
HOH
HOH
527
T
HOH
537
7
HOH
HOH
537
T
HOH
545
7
HOH
HOH
545
T
HOH
546
7
HOH
HOH
546
T
HOH
547
7
HOH
HOH
547
T
HOH
564
7
HOH
HOH
564
T
HOH
585
7
HOH
HOH
585
T
HOH
594
7
HOH
HOH
594
T
HOH
634
7
HOH
HOH
634
T
HOH
651
7
HOH
HOH
651
T
HOH
652
7
HOH
HOH
652
T
HOH
510
7
HOH
HOH
510
P
HOH
511
7
HOH
HOH
511
P
HOH
526
7
HOH
HOH
526
P
HOH
534
7
HOH
HOH
534
P
HOH
565
7
HOH
HOH
565
P
HOH
566
7
HOH
HOH
566
P
HOH
567
7
HOH
HOH
567
P
HOH
568
7
HOH
HOH
568
P
HOH
569
7
HOH
HOH
569
P
HOH
570
7
HOH
HOH
570
P
HOH
571
7
HOH
HOH
571
P
HOH
595
7
HOH
HOH
595
P
HOH
599
7
HOH
HOH
599
P
HOH
613
7
HOH
HOH
613
P
HOH
614
7
HOH
HOH
614
P
HOH
615
7
HOH
HOH
615
P
HOH
635
7
HOH
HOH
635
P
HOH
648
7
HOH
HOH
648
P
HOH
653
7
HOH
HOH
653
P
HOH
656
7
HOH
HOH
656
P
HOH
660
7
HOH
HOH
660
P
HOH
501
7
HOH
HOH
501
A
HOH
502
7
HOH
HOH
502
A
HOH
503
7
HOH
HOH
503
A
HOH
505
7
HOH
HOH
505
A
HOH
506
7
HOH
HOH
506
A
HOH
507
7
HOH
HOH
507
A
HOH
508
7
HOH
HOH
508
A
HOH
509
7
HOH
HOH
509
A
HOH
512
7
HOH
HOH
512
A
HOH
513
7
HOH
HOH
513
A
HOH
514
7
HOH
HOH
514
A
HOH
515
7
HOH
HOH
515
A
HOH
516
7
HOH
HOH
516
A
HOH
518
7
HOH
HOH
518
A
HOH
519
7
HOH
HOH
519
A
HOH
520
7
HOH
HOH
520
A
HOH
521
7
HOH
HOH
521
A
HOH
522
7
HOH
HOH
522
A
HOH
523
7
HOH
HOH
523
A
HOH
524
7
HOH
HOH
524
A
HOH
528
7
HOH
HOH
528
A
HOH
529
7
HOH
HOH
529
A
HOH
530
7
HOH
HOH
530
A
HOH
531
7
HOH
HOH
531
A
HOH
533
7
HOH
HOH
533
A
HOH
535
7
HOH
HOH
535
A
HOH
536
7
HOH
HOH
536
A
HOH
538
7
HOH
HOH
538
A
HOH
539
7
HOH
HOH
539
A
HOH
541
7
HOH
HOH
541
A
HOH
542
7
HOH
HOH
542
A
HOH
543
7
HOH
HOH
543
A
HOH
544
7
HOH
HOH
544
A
HOH
550
7
HOH
HOH
550
A
HOH
551
7
HOH
HOH
551
A
HOH
552
7
HOH
HOH
552
A
HOH
553
7
HOH
HOH
553
A
HOH
555
7
HOH
HOH
555
A
HOH
556
7
HOH
HOH
556
A
HOH
557
7
HOH
HOH
557
A
HOH
558
7
HOH
HOH
558
A
HOH
560
7
HOH
HOH
560
A
HOH
561
7
HOH
HOH
561
A
HOH
562
7
HOH
HOH
562
A
HOH
563
7
HOH
HOH
563
A
HOH
575
7
HOH
HOH
575
A
HOH
576
7
HOH
HOH
576
A
HOH
577
7
HOH
HOH
577
A
HOH
578
7
HOH
HOH
578
A
HOH
579
7
HOH
HOH
579
A
HOH
580
7
HOH
HOH
580
A
HOH
581
7
HOH
HOH
581
A
HOH
582
7
HOH
HOH
582
A
HOH
583
7
HOH
HOH
583
A
HOH
584
7
HOH
HOH
584
A
HOH
589
7
HOH
HOH
589
A
HOH
590
7
HOH
HOH
590
A
HOH
591
7
HOH
HOH
591
A
HOH
592
7
HOH
HOH
592
A
HOH
593
7
HOH
HOH
593
A
HOH
596
7
HOH
HOH
596
A
HOH
597
7
HOH
HOH
597
A
HOH
600
7
HOH
HOH
600
A
HOH
601
7
HOH
HOH
601
A
HOH
602
7
HOH
HOH
602
A
HOH
603
7
HOH
HOH
603
A
HOH
604
7
HOH
HOH
604
A
HOH
606
7
HOH
HOH
606
A
HOH
607
7
HOH
HOH
607
A
HOH
608
7
HOH
HOH
608
A
HOH
610
7
HOH
HOH
610
A
HOH
611
7
HOH
HOH
611
A
HOH
612
7
HOH
HOH
612
A
HOH
616
7
HOH
HOH
616
A
HOH
617
7
HOH
HOH
617
A
HOH
618
7
HOH
HOH
618
A
HOH
620
7
HOH
HOH
620
A
HOH
621
7
HOH
HOH
621
A
HOH
622
7
HOH
HOH
622
A
HOH
623
7
HOH
HOH
623
A
HOH
624
7
HOH
HOH
624
A
HOH
625
7
HOH
HOH
625
A
HOH
626
7
HOH
HOH
626
A
HOH
627
7
HOH
HOH
627
A
HOH
628
7
HOH
HOH
628
A
HOH
629
7
HOH
HOH
629
A
HOH
631
7
HOH
HOH
631
A
HOH
636
7
HOH
HOH
636
A
HOH
637
7
HOH
HOH
637
A
HOH
638
7
HOH
HOH
638
A
HOH
639
7
HOH
HOH
639
A
HOH
640
7
HOH
HOH
640
A
HOH
641
7
HOH
HOH
641
A
HOH
642
7
HOH
HOH
642
A
HOH
643
7
HOH
HOH
643
A
HOH
644
7
HOH
HOH
644
A
HOH
645
7
HOH
HOH
645
A
HOH
646
7
HOH
HOH
646
A
HOH
647
7
HOH
HOH
647
A
HOH
649
7
HOH
HOH
649
A
HOH
650
7
HOH
HOH
650
A
HOH
654
7
HOH
HOH
654
A
HOH
657
7
HOH
HOH
657
A
HOH
658
7
HOH
HOH
658
A
HOH
661
7
HOH
HOH
661
A
HOH
662
7
HOH
HOH
662
A
HOH
663
7
HOH
HOH
663
A
HOH
664
7
HOH
HOH
664
A
C
1
n
1
DC
1
T
A
2
n
2
DA
2
T
T
3
n
3
DT
3
T
T
4
n
4
DT
4
T
A
5
n
5
DA
5
T
G
6
n
6
DG
6
T
A
7
n
7
DA
7
T
A
8
n
8
DA
8
T
T
1
n
1
DT
1
P
C
2
n
2
DC
2
P
T
3
n
3
DT
3
P
A
4
n
4
DA
4
P
A
5
n
5
DA
5
P
T
6
n
6
DT
6
P
G
7
n
7
DG
7
P
A
8
n
8
DA
8
P
n
1
1
A
n
2
2
A
n
3
3
A
n
4
4
A
n
5
5
A
n
6
6
A
n
7
7
A
n
8
8
A
GLU
9
n
9
GLU
9
A
THR
10
n
10
THR
10
A
LEU
11
n
11
LEU
11
A
ASN
12
n
12
ASN
12
A
GLY
13
n
13
GLY
13
A
GLY
14
n
14
GLY
14
A
ILE
15
n
15
ILE
15
A
THR
16
n
16
THR
16
A
ASP
17
n
17
ASP
17
A
MET
18
n
18
MET
18
A
LEU
19
n
19
LEU
19
A
THR
20
n
20
THR
20
A
GLU
21
n
21
GLU
21
A
LEU
22
n
22
LEU
22
A
ALA
23
n
23
ALA
23
A
ASN
24
n
24
ASN
24
A
PHE
25
n
25
PHE
25
A
GLU
26
n
26
GLU
26
A
LYS
27
n
27
LYS
27
A
ASN
28
n
28
ASN
28
A
VAL
29
n
29
VAL
29
A
SER
30
n
30
SER
30
A
GLN
31
n
31
GLN
31
A
ALA
32
n
32
ALA
32
A
ILE
33
n
33
ILE
33
A
HIS
34
n
34
HIS
34
A
LYS
35
n
35
LYS
35
A
TYR
36
n
36
TYR
36
A
ASN
37
n
37
ASN
37
A
ALA
38
n
38
ALA
38
A
TYR
39
n
39
TYR
39
A
ARG
40
n
40
ARG
40
A
LYS
41
n
41
LYS
41
A
ALA
42
n
42
ALA
42
A
ALA
43
n
43
ALA
43
A
SER
44
n
44
SER
44
A
VAL
45
n
45
VAL
45
A
ILE
46
n
46
ILE
46
A
ALA
47
n
47
ALA
47
A
LYS
48
n
48
LYS
48
A
TYR
49
n
49
TYR
49
A
PRO
50
n
50
PRO
50
A
HIS
51
n
51
HIS
51
A
LYS
52
n
52
LYS
52
A
ILE
53
n
53
ILE
53
A
LYS
54
n
54
LYS
54
A
SER
55
n
55
SER
55
A
GLY
56
n
56
GLY
56
A
ALA
57
n
57
ALA
57
A
GLU
58
n
58
GLU
58
A
ALA
59
n
59
ALA
59
A
LYS
60
n
60
LYS
60
A
LYS
61
n
61
LYS
61
A
LEU
62
n
62
LEU
62
A
PRO
63
n
63
PRO
63
A
GLY
64
n
64
GLY
64
A
VAL
65
n
65
VAL
65
A
GLY
66
n
66
GLY
66
A
THR
67
n
67
THR
67
A
LYS
68
n
68
LYS
68
A
ILE
69
n
69
ILE
69
A
ALA
70
n
70
ALA
70
A
GLU
71
n
71
GLU
71
A
LYS
72
n
72
LYS
72
A
ILE
73
n
73
ILE
73
A
ASP
74
n
74
ASP
74
A
GLU
75
n
75
GLU
75
A
PHE
76
n
76
PHE
76
A
LEU
77
n
77
LEU
77
A
ALA
78
n
78
ALA
78
A
THR
79
n
79
THR
79
A
GLY
80
n
80
GLY
80
A
LYS
81
n
81
LYS
81
A
LEU
82
n
82
LEU
82
A
ARG
83
n
83
ARG
83
A
LYS
84
n
84
LYS
84
A
LEU
85
n
85
LEU
85
A
GLU
86
n
86
GLU
86
A
LYS
87
n
87
LYS
87
A
ILE
88
n
88
ILE
88
A
ARG
89
n
89
ARG
89
A
GLN
90
n
90
GLN
90
A
ASP
91
n
91
ASP
91
A
ASP
92
n
92
ASP
92
A
THR
93
n
93
THR
93
A
SER
94
n
94
SER
94
A
SER
95
n
95
SER
95
A
SER
96
n
96
SER
96
A
ILE
97
n
97
ILE
97
A
ASN
98
n
98
ASN
98
A
PHE
99
n
99
PHE
99
A
LEU
100
n
100
LEU
100
A
THR
101
n
101
THR
101
A
ARG
102
n
102
ARG
102
A
VAL
103
n
103
VAL
103
A
SER
104
n
104
SER
104
A
GLY
105
n
105
GLY
105
A
ILE
106
n
106
ILE
106
A
GLY
107
n
107
GLY
107
A
PRO
108
n
108
PRO
108
A
SER
109
n
109
SER
109
A
ALA
110
n
110
ALA
110
A
ALA
111
n
111
ALA
111
A
ARG
112
n
112
ARG
112
A
LYS
113
n
113
LYS
113
A
PHE
114
n
114
PHE
114
A
VAL
115
n
115
VAL
115
A
ASP
116
n
116
ASP
116
A
GLU
117
n
117
GLU
117
A
GLY
118
n
118
GLY
118
A
ILE
119
n
119
ILE
119
A
LYS
120
n
120
LYS
120
A
THR
121
n
121
THR
121
A
LEU
122
n
122
LEU
122
A
GLU
123
n
123
GLU
123
A
ASP
124
n
124
ASP
124
A
LEU
125
n
125
LEU
125
A
ARG
126
n
126
ARG
126
A
LYS
127
n
127
LYS
127
A
ASN
128
n
128
ASN
128
A
GLU
129
n
129
GLU
129
A
ASP
130
n
130
ASP
130
A
LYS
131
n
131
LYS
131
A
LEU
132
n
132
LEU
132
A
ASN
133
n
133
ASN
133
A
HIS
134
n
134
HIS
134
A
HIS
135
n
135
HIS
135
A
GLN
136
n
136
GLN
136
A
ARG
137
n
137
ARG
137
A
ILE
138
n
138
ILE
138
A
GLY
139
n
139
GLY
139
A
LEU
140
n
140
LEU
140
A
LYS
141
n
141
LYS
141
A
TYR
142
n
142
TYR
142
A
PHE
143
n
143
PHE
143
A
GLY
144
n
144
GLY
144
A
ASP
145
n
145
ASP
145
A
PHE
146
n
146
PHE
146
A
GLU
147
n
147
GLU
147
A
LYS
148
n
148
LYS
148
A
ARG
149
n
149
ARG
149
A
ILE
150
n
150
ILE
150
A
PRO
151
n
151
PRO
151
A
ARG
152
n
152
ARG
152
A
GLU
153
n
153
GLU
153
A
GLU
154
n
154
GLU
154
A
MET
155
n
155
MET
155
A
LEU
156
n
156
LEU
156
A
GLN
157
n
157
GLN
157
A
MET
158
n
158
MET
158
A
GLN
159
n
159
GLN
159
A
ASP
160
n
160
ASP
160
A
ILE
161
n
161
ILE
161
A
VAL
162
n
162
VAL
162
A
LEU
163
n
163
LEU
163
A
ASN
164
n
164
ASN
164
A
GLU
165
n
165
GLU
165
A
VAL
166
n
166
VAL
166
A
LYS
167
n
167
LYS
167
A
LYS
168
n
168
LYS
168
A
VAL
169
n
169
VAL
169
A
ASP
170
n
170
ASP
170
A
SER
171
n
171
SER
171
A
GLU
172
n
172
GLU
172
A
TYR
173
n
173
TYR
173
A
ILE
174
n
174
ILE
174
A
ALA
175
n
175
ALA
175
A
THR
176
n
176
THR
176
A
VAL
177
n
177
VAL
177
A
CYS
178
n
178
CYS
178
A
GLY
179
n
179
GLY
179
A
SER
180
n
180
SER
180
A
PHE
181
n
181
PHE
181
A
ARG
182
n
182
ARG
182
A
ARG
183
n
183
ARG
183
A
GLY
184
n
184
GLY
184
A
ALA
185
n
185
ALA
185
A
GLU
186
n
186
GLU
186
A
SER
187
n
187
SER
187
A
SER
188
n
188
SER
188
A
GLY
189
n
189
GLY
189
A
ASP
190
n
190
ASP
190
A
MET
191
n
191
MET
191
A
ASP
192
n
192
ASP
192
A
VAL
193
n
193
VAL
193
A
LEU
194
n
194
LEU
194
A
LEU
195
n
195
LEU
195
A
THR
196
n
196
THR
196
A
HIS
197
n
197
HIS
197
A
PRO
198
n
198
PRO
198
A
SER
199
n
199
SER
199
A
PHE
200
n
200
PHE
200
A
THR
201
n
201
THR
201
A
SER
202
n
202
SER
202
A
GLU
203
n
203
GLU
203
A
SER
204
n
204
SER
204
A
THR
205
n
205
THR
205
A
LYS
206
n
206
LYS
206
A
GLN
207
n
207
GLN
207
A
PRO
208
n
208
PRO
208
A
LYS
209
n
209
LYS
209
A
LEU
210
n
210
LEU
210
A
LEU
211
n
211
LEU
211
A
HIS
212
n
212
HIS
212
A
GLN
213
n
213
GLN
213
A
VAL
214
n
214
VAL
214
A
VAL
215
n
215
VAL
215
A
GLU
216
n
216
GLU
216
A
GLN
217
n
217
GLN
217
A
LEU
218
n
218
LEU
218
A
GLN
219
n
219
GLN
219
A
LYS
220
n
220
LYS
220
A
VAL
221
n
221
VAL
221
A
HIS
222
n
222
HIS
222
A
PHE
223
n
223
PHE
223
A
ILE
224
n
224
ILE
224
A
THR
225
n
225
THR
225
A
ASP
226
n
226
ASP
226
A
THR
227
n
227
THR
227
A
LEU
228
n
228
LEU
228
A
SER
229
n
229
SER
229
A
LYS
230
n
230
LYS
230
A
GLY
231
n
231
GLY
231
A
GLU
232
n
232
GLU
232
A
THR
233
n
233
THR
233
A
LYS
234
n
234
LYS
234
A
PHE
235
n
235
PHE
235
A
MET
236
n
236
MET
236
A
GLY
237
n
237
GLY
237
A
VAL
238
n
238
VAL
238
A
CYS
239
n
239
CYS
239
A
GLN
240
n
240
GLN
240
A
LEU
241
n
241
LEU
241
A
PRO
242
n
242
PRO
242
A
SER
243
n
243
SER
243
A
LYS
244
n
244
LYS
244
A
ASN
245
n
245
ASN
245
A
ASP
246
n
246
ASP
246
A
GLU
247
n
247
GLU
247
A
LYS
248
n
248
LYS
248
A
GLU
249
n
249
GLU
249
A
TYR
250
n
250
TYR
250
A
PRO
251
n
251
PRO
251
A
HIS
252
n
252
HIS
252
A
ARG
253
n
253
ARG
253
A
ARG
254
n
254
ARG
254
A
ILE
255
n
255
ILE
255
A
ASP
256
n
256
ASP
256
A
ILE
257
n
257
ILE
257
A
ARG
258
n
258
ARG
258
A
LEU
259
n
259
LEU
259
A
ILE
260
n
260
ILE
260
A
PRO
261
n
261
PRO
261
A
LYS
262
n
262
LYS
262
A
ASP
263
n
263
ASP
263
A
GLN
264
n
264
GLN
264
A
TYR
265
n
265
TYR
265
A
TYR
266
n
266
TYR
266
A
CYS
267
n
267
CYS
267
A
GLY
268
n
268
GLY
268
A
VAL
269
n
269
VAL
269
A
LEU
270
n
270
LEU
270
A
TYR
271
n
271
TYR
271
A
PHE
272
n
272
PHE
272
A
THR
273
n
273
THR
273
A
GLY
274
n
274
GLY
274
A
SER
275
n
275
SER
275
A
ASP
276
n
276
ASP
276
A
ILE
277
n
277
ILE
277
A
PHE
278
n
278
PHE
278
A
ASN
279
n
279
ASN
279
A
LYS
280
n
280
LYS
280
A
ASN
281
n
281
ASN
281
A
MET
282
n
282
MET
282
A
ARG
283
n
283
ARG
283
A
ALA
284
n
284
ALA
284
A
HIS
285
n
285
HIS
285
A
ALA
286
n
286
ALA
286
A
LEU
287
n
287
LEU
287
A
GLU
288
n
288
GLU
288
A
LYS
289
n
289
LYS
289
A
GLY
290
n
290
GLY
290
A
PHE
291
n
291
PHE
291
A
THR
292
n
292
THR
292
A
ILE
293
n
293
ILE
293
A
ASN
294
n
294
ASN
294
A
GLU
295
n
295
GLU
295
A
TYR
296
n
296
TYR
296
A
THR
297
n
297
THR
297
A
ILE
298
n
298
ILE
298
A
ARG
299
n
299
ARG
299
A
PRO
300
n
300
PRO
300
A
LEU
301
n
301
LEU
301
A
GLY
302
n
302
GLY
302
A
VAL
303
n
303
VAL
303
A
THR
304
n
304
THR
304
A
GLY
305
n
305
GLY
305
A
VAL
306
n
306
VAL
306
A
ALA
307
n
307
ALA
307
A
GLY
308
n
308
GLY
308
A
GLU
309
n
309
GLU
309
A
PRO
310
n
310
PRO
310
A
LEU
311
n
311
LEU
311
A
PRO
312
n
312
PRO
312
A
VAL
313
n
313
VAL
313
A
ASP
314
n
314
ASP
314
A
SER
315
n
315
SER
315
A
GLU
316
n
316
GLU
316
A
LYS
317
n
317
LYS
317
A
ASP
318
n
318
ASP
318
A
ILE
319
n
319
ILE
319
A
PHE
320
n
320
PHE
320
A
ASP
321
n
321
ASP
321
A
TYR
322
n
322
TYR
322
A
ILE
323
n
323
ILE
323
A
GLN
324
n
324
GLN
324
A
TRP
325
n
325
TRP
325
A
LYS
326
n
326
LYS
326
A
TYR
327
n
327
TYR
327
A
ARG
328
n
328
ARG
328
A
GLU
329
n
329
GLU
329
A
PRO
330
n
330
PRO
330
A
LYS
331
n
331
LYS
331
A
ASP
332
n
332
ASP
332
A
ARG
333
n
333
ARG
333
A
SER
334
n
334
SER
334
A
GLU
335
n
335
GLU
335
A
0.1780000
author_defined_assembly
3
trimeric
P
DT
6
B
OP1
DT
6
1_555
A
NA
341
F
NA
NA
1_555
A
THR
101
C
O
THR
101
1_555
143.3
P
DT
6
B
OP1
DT
6
1_555
A
NA
341
F
NA
NA
1_555
A
VAL
103
C
O
VAL
103
1_555
94.8
A
THR
101
C
O
THR
101
1_555
A
NA
341
F
NA
NA
1_555
A
VAL
103
C
O
VAL
103
1_555
111.6
P
DT
6
B
OP1
DT
6
1_555
A
NA
341
F
NA
NA
1_555
A
ILE
106
C
O
ILE
106
1_555
71.9
A
THR
101
C
O
THR
101
1_555
A
NA
341
F
NA
NA
1_555
A
ILE
106
C
O
ILE
106
1_555
85.0
A
VAL
103
C
O
VAL
103
1_555
A
NA
341
F
NA
NA
1_555
A
ILE
106
C
O
ILE
106
1_555
85.3
P
DT
6
B
OP1
DT
6
1_555
A
NA
341
F
NA
NA
1_555
A
HOH
601
L
O
HOH
1_555
93.5
A
THR
101
C
O
THR
101
1_555
A
NA
341
F
NA
NA
1_555
A
HOH
601
L
O
HOH
1_555
84.1
A
VAL
103
C
O
VAL
103
1_555
A
NA
341
F
NA
NA
1_555
A
HOH
601
L
O
HOH
1_555
137.3
A
ILE
106
C
O
ILE
106
1_555
A
NA
341
F
NA
NA
1_555
A
HOH
601
L
O
HOH
1_555
136.8
A
HIS
51
C
ND1
HIS
51
1_555
A
ZN
343
H
ZN
ZN
1_555
A
HIS
134
C
ND1
HIS
134
1_565
112.2
A
HIS
51
C
ND1
HIS
51
1_555
A
ZN
343
H
ZN
ZN
1_555
A
HOH
515
L
O
HOH
1_565
118.6
A
HIS
134
C
ND1
HIS
134
1_565
A
ZN
343
H
ZN
ZN
1_555
A
HOH
515
L
O
HOH
1_565
107.9
A
HIS
51
C
ND1
HIS
51
1_555
A
ZN
343
H
ZN
ZN
1_555
A
HOH
516
L
O
HOH
1_565
126.4
A
HIS
134
C
ND1
HIS
134
1_565
A
ZN
343
H
ZN
ZN
1_555
A
HOH
516
L
O
HOH
1_565
100.8
A
HOH
515
L
O
HOH
1_565
A
ZN
343
H
ZN
ZN
1_555
A
HOH
516
L
O
HOH
1_565
87.2
A
LYS
60
C
O
LYS
60
1_555
A
NA
342
G
NA
NA
1_555
A
LEU
62
C
O
LEU
62
1_555
76.5
A
ASP
190
C
OD1
ASP
190
1_555
A
ZN
339
D
ZN
ZN
1_555
A
ASP
192
C
OD2
ASP
192
1_555
124.9
A
ASP
190
C
OD1
ASP
190
1_555
A
ZN
339
D
ZN
ZN
1_555
A
DTP
338
I
O3G
DTP
1_555
67.5
A
ASP
192
C
OD2
ASP
192
1_555
A
ZN
339
D
ZN
ZN
1_555
A
DTP
338
I
O3G
DTP
1_555
153.2
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
ILE
174
C
O
ILE
174
A
N
THR
196
C
N
THR
196
A
O
MET
191
C
O
MET
191
A
N
ASP
256
C
N
ASP
256
A
O
ARG
253
C
O
ARG
253
A
N
CYS
239
C
N
CYS
239
A
O
VAL
238
C
O
VAL
238
A
N
ASP
226
C
N
ASP
226
A
O
THR
292
C
O
THR
292
A
N
ARG
299
C
N
ARG
299
1
T
C5'
DA
8
A
C5'
DA
8
1
Y
1
T
C4'
DA
8
A
C4'
DA
8
1
Y
1
T
O4'
DA
8
A
O4'
DA
8
1
Y
1
T
C3'
DA
8
A
C3'
DA
8
1
Y
1
T
O3'
DA
8
A
O3'
DA
8
1
Y
1
T
C2'
DA
8
A
C2'
DA
8
1
Y
1
T
C1'
DA
8
A
C1'
DA
8
1
Y
1
T
N9
DA
8
A
N9
DA
8
1
Y
1
T
C8
DA
8
A
C8
DA
8
1
Y
1
T
N7
DA
8
A
N7
DA
8
1
Y
1
T
C5
DA
8
A
C5
DA
8
1
Y
1
T
C6
DA
8
A
C6
DA
8
1
Y
1
T
N6
DA
8
A
N6
DA
8
1
Y
1
T
N1
DA
8
A
N1
DA
8
1
Y
1
T
C2
DA
8
A
C2
DA
8
1
Y
1
T
N3
DA
8
A
N3
DA
8
1
Y
1
T
C4
DA
8
A
C4
DA
8
1
Y
1
P
C5'
DA
8
B
C5'
DA
8
1
Y
1
P
C4'
DA
8
B
C4'
DA
8
1
Y
1
P
O4'
DA
8
B
O4'
DA
8
1
Y
1
P
C3'
DA
8
B
C3'
DA
8
1
Y
1
P
O3'
DA
8
B
O3'
DA
8
1
Y
1
P
C2'
DA
8
B
C2'
DA
8
1
Y
1
P
C1'
DA
8
B
C1'
DA
8
1
Y
1
P
N9
DA
8
B
N9
DA
8
1
Y
1
P
C8
DA
8
B
C8
DA
8
1
Y
1
P
N7
DA
8
B
N7
DA
8
1
Y
1
P
C5
DA
8
B
C5
DA
8
1
Y
1
P
C6
DA
8
B
C6
DA
8
1
Y
1
P
N6
DA
8
B
N6
DA
8
1
Y
1
P
N1
DA
8
B
N1
DA
8
1
Y
1
P
C2
DA
8
B
C2
DA
8
1
Y
1
P
N3
DA
8
B
N3
DA
8
1
Y
1
P
C4
DA
8
B
C4
DA
8
1
Y
1
A
PA
DTP
338
I
PA
DTP
1
1
N
1
A
O1A
DTP
338
I
O1A
DTP
1
1
N
1
A
O2A
DTP
338
I
O2A
DTP
1
1
N
1
A
O5'
DTP
338
I
O5'
DTP
1
1
N
1
A
C5'
DTP
338
I
C5'
DTP
1
1
N
1
A
C4'
DTP
338
I
C4'
DTP
1
1
N
1
A
O4'
DTP
338
I
O4'
DTP
1
1
N
1
A
C3'
DTP
338
I
C3'
DTP
1
1
N
1
A
O3'
DTP
338
I
O3'
DTP
1
1
N
1
A
C2'
DTP
338
I
C2'
DTP
1
1
N
1
A
C1'
DTP
338
I
C1'
DTP
1
1
N
1
A
N9
DTP
338
I
N9
DTP
1
1
N
1
A
C8
DTP
338
I
C8
DTP
1
1
N
1
A
N7
DTP
338
I
N7
DTP
1
1
N
1
A
C5
DTP
338
I
C5
DTP
1
1
N
1
A
C6
DTP
338
I
C6
DTP
1
1
N
1
A
N6
DTP
338
I
N6
DTP
1
1
N
1
A
N1
DTP
338
I
N1
DTP
1
1
N
1
A
C2
DTP
338
I
C2
DTP
1
1
N
1
A
N3
DTP
338
I
N3
DTP
1
1
N
1
A
C4
DTP
338
I
C4
DTP
1
1
N
1
A
MET
1
C
MET
1
1
Y
1
A
SER
2
C
SER
2
1
Y
1
A
LYS
3
C
LYS
3
1
Y
1
A
ARG
4
C
ARG
4
1
Y
1
A
LYS
5
C
LYS
5
1
Y
1
A
ALA
6
C
ALA
6
1
Y
1
A
PRO
7
C
PRO
7
1
Y
1
A
GLN
8
C
GLN
8
1
Y
1
A
GLU
9
C
GLU
9
0
Y
1
A
ASP
246
C
ASP
246
0
Y
1
A
GLU
247
C
GLU
247
0
Y
1
A
CA
ARG
40
PLANAR
1
A
CB
THR
101
PLANAR
1
A
CA
ASP
116
PLANAR
1
3.68
0.50
106.80
110.48
T
T
T
O4'
C1'
C2'
DC
DC
DC
1
1
1
N
1
11.55
1.20
119.70
131.25
T
T
T
C3'
O3'
P
DC
DC
DA
1
1
2
Y
1
4.14
0.30
108.30
112.44
T
T
T
O4'
C1'
N9
DA
DA
DA
2
2
2
N
1
2.15
0.30
108.30
110.45
T
T
T
O4'
C1'
N1
DT
DT
DT
3
3
3
N
1
-3.99
0.60
122.90
118.91
T
T
T
C6
C5
C7
DT
DT
DT
3
3
3
N
1
-6.23
1.00
110.10
103.87
T
T
T
C1'
O4'
C4'
DT
DT
DT
4
4
4
N
1
-5.65
0.80
105.90
100.25
T
T
T
O4'
C1'
C2'
DT
DT
DT
4
4
4
N
1
5.09
0.30
108.30
113.39
T
T
T
O4'
C1'
N1
DT
DT
DT
4
4
4
N
1
-36.32
1.50
120.40
84.08
T
T
T
C6
N1
C1'
DT
DT
DT
4
4
4
N
1
35.51
1.60
118.20
153.71
T
T
T
C2
N1
C1'
DT
DT
DT
4
4
4
N
1
-4.66
0.70
132.30
127.64
T
T
T
C6
C5
N7
DA
DA
DA
5
5
5
N
1
5.54
0.60
118.60
124.14
T
T
T
N1
C6
N6
DA
DA
DA
5
5
5
N
1
-5.09
0.80
123.70
118.61
T
T
T
C5
C6
N6
DA
DA
DA
5
5
5
N
1
7.59
0.30
108.30
115.89
T
T
T
O4'
C1'
N9
DG
DG
DG
6
6
6
N
1
8.22
1.30
127.00
135.22
T
T
T
C8
N9
C1'
DG
DG
DG
6
6
6
N
1
-8.71
1.30
126.50
117.79
T
T
T
C4
N9
C1'
DG
DG
DG
6
6
6
N
1
20.35
1.80
127.70
148.05
T
T
T
C8
N9
C1'
DA
DA
DA
7
7
7
N
1
-21.04
1.80
126.30
105.26
T
T
T
C4
N9
C1'
DA
DA
DA
7
7
7
N
1
-10.46
1.60
120.90
110.44
P
P
P
P
O5'
C5'
DT
DT
DT
1
1
1
N
1
4.88
0.30
108.30
113.18
P
P
P
O4'
C1'
N1
DT
DT
DT
1
1
1
N
1
-25.28
1.50
120.40
95.12
P
P
P
C6
N1
C1'
DT
DT
DT
1
1
1
N
1
24.66
1.60
118.20
142.86
P
P
P
C2
N1
C1'
DT
DT
DT
1
1
1
N
1
-4.80
0.70
102.20
97.40
P
P
P
C4'
C3'
C2'
DC
DC
DC
2
2
2
N
1
4.48
0.30
108.30
112.78
P
P
P
O4'
C1'
N1
DC
DC
DC
2
2
2
N
1
-24.90
1.20
120.80
95.90
P
P
P
C6
N1
C1'
DC
DC
DC
2
2
2
N
1
26.03
1.10
118.80
144.83
P
P
P
C2
N1
C1'
DC
DC
DC
2
2
2
N
1
-7.03
0.80
109.40
102.37
P
P
P
O5'
C5'
C4'
DT
DT
DT
3
3
3
N
1
11.29
1.40
114.30
125.59
P
P
P
N1
C1'
C2'
DT
DT
DT
3
3
3
N
1
8.30
0.30
108.30
116.60
P
P
P
O4'
C1'
N1
DT
DT
DT
3
3
3
N
1
-6.11
0.60
122.30
116.19
P
P
P
N3
C2
O2
DT
DT
DT
3
3
3
N
1
-17.80
1.50
120.40
102.60
P
P
P
C6
N1
C1'
DT
DT
DT
3
3
3
N
1
19.92
1.60
118.20
138.12
P
P
P
C2
N1
C1'
DT
DT
DT
3
3
3
N
1
-19.85
1.80
127.70
107.85
P
P
P
C8
N9
C1'
DA
DA
DA
5
5
5
N
1
20.06
1.80
126.30
146.36
P
P
P
C4
N9
C1'
DA
DA
DA
5
5
5
N
1
-20.66
1.50
120.40
99.74
P
P
P
C6
N1
C1'
DT
DT
DT
6
6
6
N
1
20.25
1.60
118.20
138.45
P
P
P
C2
N1
C1'
DT
DT
DT
6
6
6
N
1
5.31
0.30
108.30
113.61
P
P
P
O4'
C1'
N9
DG
DG
DG
7
7
7
N
1
21.83
1.30
127.00
148.83
P
P
P
C8
N9
C1'
DG
DG
DG
7
7
7
N
1
-20.79
1.30
126.50
105.71
P
P
P
C4
N9
C1'
DG
DG
DG
7
7
7
N
1
-12.34
1.90
113.40
101.06
A
A
A
CA
CB
CG
TYR
TYR
TYR
36
36
36
N
1
-5.34
0.60
121.00
115.66
A
A
A
CB
CG
CD1
TYR
TYR
TYR
39
39
39
N
1
15.92
1.50
119.30
135.22
A
A
A
C
N
CA
TYR
PRO
PRO
49
50
50
Y
1
-19.50
2.10
128.40
108.90
A
A
A
C
N
CD
TYR
PRO
PRO
49
50
50
Y
1
6.19
0.90
118.30
124.49
A
A
A
CB
CG
OD1
ASP
ASP
ASP
74
74
74
N
1
-9.98
1.40
112.40
102.42
A
A
A
CA
CB
CG2
THR
THR
THR
79
79
79
N
1
3.09
0.50
120.30
123.39
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
89
89
89
N
1
-6.62
0.90
118.30
111.68
A
A
A
CB
CG
OD1
ASP
ASP
ASP
91
91
91
N
1
5.53
0.90
118.30
123.83
A
A
A
CB
CG
OD2
ASP
ASP
ASP
91
91
91
N
1
6.34
0.90
118.30
124.64
A
A
A
CB
CG
OD1
ASP
ASP
ASP
92
92
92
N
1
-8.10
0.90
118.30
110.20
A
A
A
CB
CG
OD2
ASP
ASP
ASP
92
92
92
N
1
10.16
1.40
112.40
122.56
A
A
A
CA
CB
CG2
THR
THR
THR
101
101
101
N
1
15.58
2.00
110.40
125.98
A
A
A
CB
CA
C
ASP
ASP
ASP
116
116
116
N
1
11.66
1.80
110.60
122.26
A
A
A
N
CA
CB
ASP
ASP
ASP
116
116
116
N
1
-5.52
0.90
118.30
112.78
A
A
A
CB
CG
OD2
ASP
ASP
ASP
124
124
124
N
1
3.14
0.50
120.30
123.44
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
126
126
126
N
1
7.27
0.90
118.30
125.57
A
A
A
CB
CG
OD1
ASP
ASP
ASP
130
130
130
N
1
-7.62
0.90
118.30
110.68
A
A
A
CB
CG
OD2
ASP
ASP
ASP
130
130
130
N
1
11.04
1.80
110.60
121.64
A
A
A
N
CA
CB
GLN
GLN
GLN
157
157
157
N
1
7.48
1.20
111.50
118.98
A
A
A
CB
CA
C
CYS
CYS
CYS
178
178
178
N
1
-7.02
0.90
118.30
111.28
A
A
A
CB
CG
OD2
ASP
ASP
ASP
192
192
192
N
1
5.93
0.90
118.30
124.23
A
A
A
CB
CG
OD1
ASP
ASP
ASP
226
226
226
N
1
-5.90
0.90
118.30
112.40
A
A
A
CB
CG
OD1
ASP
ASP
ASP
246
246
246
N
1
5.95
0.90
118.30
124.25
A
A
A
CB
CG
OD1
ASP
ASP
ASP
256
256
256
N
1
-6.23
0.90
118.30
112.07
A
A
A
CB
CG
OD2
ASP
ASP
ASP
263
263
263
N
1
-14.13
1.90
113.40
99.27
A
A
A
CA
CB
CG
TYR
TYR
TYR
266
266
266
N
1
3.38
0.50
120.30
123.68
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
299
299
299
N
1
10.01
1.50
119.30
129.31
A
A
A
C
N
CA
GLU
PRO
PRO
309
310
310
Y
1
9.77
1.50
119.30
129.07
A
A
A
C
N
CA
LEU
PRO
PRO
311
312
312
Y
1
-13.78
2.10
128.40
114.62
A
A
A
C
N
CD
LEU
PRO
PRO
311
312
312
Y
1
5.47
0.90
118.30
123.77
A
A
A
CB
CG
OD1
ASP
ASP
ASP
314
314
314
N
1
-7.86
0.90
118.30
110.44
A
A
A
CB
CG
OD2
ASP
ASP
ASP
314
314
314
N
1
15.19
2.30
111.70
126.89
A
A
A
CD
CE
NZ
LYS
LYS
LYS
326
326
326
N
1
-6.35
0.90
118.30
111.95
A
A
A
CB
CG
OD1
ASP
ASP
ASP
332
332
332
N
1
T
T
O3'
C3'
DA
DA
5
5
-0.050
0.006
1.419
1.369
N
1
T
T
O3'
C3'
DG
DG
6
6
-0.074
0.006
1.419
1.345
N
1
P
P
C1'
N1
DC
DC
2
2
0.091
0.013
1.488
1.579
N
1
P
P
C1'
N1
DT
DT
3
3
0.092
0.013
1.488
1.580
N
1
P
P
N1
C2
DT
DT
3
3
0.067
0.008
1.376
1.443
N
1
P
P
O3'
C3'
DA
DA
5
5
-0.038
0.006
1.419
1.381
N
1
P
P
N9
C4
DA
DA
5
5
0.037
0.006
1.374
1.411
N
1
P
P
P
O5'
DT
DT
6
6
-0.061
0.010
1.593
1.532
N
1
A
A
CD
OE1
GLU
GLU
58
58
0.100
0.011
1.252
1.352
N
1
A
A
CD
OE1
GLU
GLU
71
71
0.075
0.011
1.252
1.327
N
1
A
A
CD
OE1
GLU
GLU
75
75
0.075
0.011
1.252
1.327
N
1
A
A
CD
OE1
GLU
GLU
86
86
0.075
0.011
1.252
1.327
N
1
A
A
CD
OE2
GLU
GLU
117
117
0.076
0.011
1.252
1.328
N
1
A
A
CD
OE1
GLU
GLU
129
129
0.072
0.011
1.252
1.324
N
1
A
A
CD
OE2
GLU
GLU
147
147
0.081
0.011
1.252
1.333
N
1
A
A
CD
OE2
GLU
GLU
153
153
0.069
0.011
1.252
1.321
N
1
A
A
CD
OE2
GLU
GLU
154
154
0.075
0.011
1.252
1.327
N
1
A
A
CD
OE2
GLU
GLU
172
172
0.072
0.011
1.252
1.324
N
1
A
A
CD
OE1
GLU
GLU
186
186
0.073
0.011
1.252
1.325
N
1
A
A
CD
OE2
GLU
GLU
216
216
0.068
0.011
1.252
1.320
N
1
A
A
CD
OE2
GLU
GLU
249
249
0.077
0.011
1.252
1.329
N
1
A
A
CD
OE2
GLU
GLU
288
288
0.072
0.011
1.252
1.324
N
1
A
A
CD
OE2
GLU
GLU
295
295
0.075
0.011
1.252
1.327
N
1
A
A
CD
OE2
GLU
GLU
309
309
0.079
0.011
1.252
1.331
N
1
A
A
CD
OE2
GLU
GLU
329
329
0.078
0.011
1.252
1.330
N
1
A
A
CD
OE2
GLU
GLU
335
335
0.070
0.011
1.252
1.322
N
1
A
THR
10
-164.40
-9.37
1
A
ALA
32
-113.79
59.10
1
A
ILE
33
-38.56
-31.12
1
A
LYS
60
-39.80
-35.00
1
A
ALA
78
-53.96
-80.17
1
A
ASP
91
-40.82
109.22
1
A
CYS
178
-87.45
-151.25
1
A
ALA
185
-17.36
134.36
1
A
SER
199
-69.78
12.34
1
A
SER
202
-11.15
-55.39
1
A
GLU
203
-83.67
-77.92
1
A
SER
204
-20.41
81.74
1
A
THR
205
-31.52
84.99
1
A
LYS
206
39.30
-172.49
1
A
GLN
207
169.86
72.53
1
A
THR
233
-147.42
-18.39
1
A
LYS
244
-36.25
-124.74
1
A
ASN
245
-92.36
59.21
1
A
ASP
246
49.65
157.60
1
A
GLU
247
90.48
-27.11
1
A
GLN
264
-142.15
30.94
1
A
TYR
265
-64.46
-86.71
1
A
TYR
266
-34.64
-33.21
1
A
LYS
289
-57.57
0.19
1
A
GLU
295
-48.93
-16.23
1
A
THR
304
-57.62
13.07
1
A
ALA
307
176.94
164.85
1
A
GLU
309
108.61
62.73
1
A
PRO
310
-35.13
104.09
1
A
LYS
317
-63.87
-73.28
1
A
ASP
332
-104.26
46.56
0.1780000
2.700
20.000
13088
90.000
1
0.000
DIFFERENCE FOURIER
8ICB
STANDARD TNT
MOEWS
757.7
0.800
2.700
20.000
142
3072
14
293
2623
0.019
3008
0.020
3.000
4068
3.000
18.90
1802
0
0.015
73
0.020
0.006
395
0.020
6.000
3008
6.000
0.020
151
0.020
2.700
20.000
9ICV
13088
0.000
3.7000000
1
1.800
90.000
2.700
2.800
13.9000000
1.300
70.00
refinement
TNT
5-D
data reduction
SDMS
data scaling
SDMS
phasing
TNT
V. 5-D
DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + 2'-DEOXYADENOSINE-5'-TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DATP AND ZNCL2
1
N
N
2
N
N
3
N
N
4
N
N
4
N
N
5
N
N
5
N
N
4
N
N
6
N
N
7
N
N
7
N
N
7
N
N
A
GLY
13
C
GLY
13
HELX_P
A
ASN
28
C
ASN
28
1
A
16
A
ILE
33
C
ILE
33
HELX_P
A
LYS
48
C
LYS
48
1
B
16
A
SER
55
C
SER
55
HELX_P
A
LYS
61
C
LYS
61
1
C
7
A
THR
67
C
THR
67
HELX_P
A
THR
79
C
THR
79
1
D
13
A
ARG
83
C
ARG
83
HELX_P
A
GLN
90
C
GLN
90
1
E
8
A
ASP
92
C
ASP
92
HELX_P
A
ARG
102
C
ARG
102
1
F
11
A
PRO
108
C
PRO
108
HELX_P
A
GLY
118
C
GLY
118
1
G
11
A
LEU
122
C
LEU
122
HELX_P
A
LYS
131
C
LYS
131
1
H
10
A
HIS
134
C
HIS
134
HELX_P
A
GLU
147
C
GLU
147
1
I
14
A
ARG
152
C
ARG
152
HELX_P
A
VAL
169
C
VAL
169
1
J
18
A
GLY
179
C
GLY
179
HELX_P
A
GLY
184
C
GLY
184
1
K
6
A
PRO
208
C
PRO
208
HELX_P
A
LYS
220
C
LYS
220
5
L
13
A
LYS
262
C
LYS
262
HELX_P
A
THR
273
C
THR
273
5
M
12
A
ASP
276
C
ASP
276
HELX_P
A
GLU
288
C
GLU
288
1
N
13
A
GLU
316
C
GLU
316
HELX_P
A
ILE
323
C
ILE
323
1
O
8
A
PRO
330
C
PRO
330
HELX_P
A
ASP
332
C
ASP
332
5
P
3
metalc
2.362
P
DT
6
B
OP1
DT
6
1_555
A
NA
341
F
NA
NA
1_555
metalc
2.126
A
HIS
51
C
ND1
HIS
51
1_555
A
ZN
343
H
ZN
ZN
1_555
metalc
2.804
A
LYS
60
C
O
LYS
60
1_555
A
NA
342
G
NA
NA
1_555
metalc
2.536
A
LEU
62
C
O
LEU
62
1_555
A
NA
342
G
NA
NA
1_555
metalc
2.335
A
THR
101
C
O
THR
101
1_555
A
NA
341
F
NA
NA
1_555
metalc
2.255
A
VAL
103
C
O
VAL
103
1_555
A
NA
341
F
NA
NA
1_555
metalc
2.520
A
ILE
106
C
O
ILE
106
1_555
A
NA
341
F
NA
NA
1_555
metalc
2.133
A
HIS
134
C
ND1
HIS
134
1_565
A
ZN
343
H
ZN
ZN
1_555
metalc
2.521
A
ASP
190
C
OD1
ASP
190
1_555
A
ZN
339
D
ZN
ZN
1_555
metalc
2.495
A
ASP
192
C
OD2
ASP
192
1_555
A
ZN
339
D
ZN
ZN
1_555
metalc
2.697
A
ASP
192
C
OD1
ASP
192
1_555
A
ZN
340
E
ZN
ZN
1_555
metalc
2.622
A
DTP
338
I
O3G
DTP
1_555
A
ZN
339
D
ZN
ZN
1_555
metalc
2.984
A
NA
341
F
NA
NA
1_555
A
HOH
601
L
O
HOH
1_555
metalc
2.185
A
ZN
343
H
ZN
ZN
1_555
A
HOH
515
L
O
HOH
1_565
metalc
2.414
A
ZN
343
H
ZN
ZN
1_555
A
HOH
516
L
O
HOH
1_565
hydrog
DC-DG PAIR
T
DC
1
A
O2
DC
1
1_555
P
DG
7
B
N2
DG
7
1_555
hydrog
WATSON-CRICK
T
DA
2
A
N1
DA
2
1_555
P
DT
6
B
N3
DT
6
1_555
hydrog
WATSON-CRICK
T
DA
2
A
N6
DA
2
1_555
P
DT
6
B
O4
DT
6
1_555
hydrog
WATSON-CRICK
T
DT
3
A
N3
DT
3
1_555
P
DA
5
B
N1
DA
5
1_555
hydrog
WATSON-CRICK
T
DT
3
A
O4
DT
3
1_555
P
DA
5
B
N6
DA
5
1_555
hydrog
WATSON-CRICK
T
DT
4
A
N3
DT
4
1_555
P
DA
4
B
N1
DA
4
1_555
hydrog
WATSON-CRICK
T
DT
4
A
O4
DT
4
1_555
P
DA
4
B
N6
DA
4
1_555
hydrog
WATSON-CRICK
T
DA
5
A
N1
DA
5
1_555
P
DT
3
B
N3
DT
3
1_555
hydrog
WATSON-CRICK
T
DA
5
A
N6
DA
5
1_555
P
DT
3
B
O4
DT
3
1_555
hydrog
WATSON-CRICK
T
DG
6
A
N1
DG
6
1_555
P
DC
2
B
N3
DC
2
1_555
hydrog
WATSON-CRICK
T
DG
6
A
N2
DG
6
1_555
P
DC
2
B
O2
DC
2
1_555
hydrog
WATSON-CRICK
T
DG
6
A
O6
DG
6
1_555
P
DC
2
B
N4
DC
2
1_555
hydrog
WATSON-CRICK
T
DA
7
A
N1
DA
7
1_555
P
DT
1
B
N3
DT
1
1_555
hydrog
WATSON-CRICK
T
DA
7
A
N6
DA
7
1_555
P
DT
1
B
O4
DT
1
1_555
TRANSFERASE/DNA
DNA-DIRECTED DNA POLYMERASE, DNA REPLICATION, DNA REPAIR, NUCLEOTIDYLTRANSFERASE, COMPLEX (NUCLEOTIDYLTRANSFERASE-DNA, TRANSFERASE-DNA complex
A
GLY
274
C
GLY
274
1
A
SER
275
C
SER
275
-0.54
DPOB_HUMAN
UNP
3
1
P06746
9ICV
PDB
1
9ICV
9ICV
PDB
2
9ICV
1
334
9ICV
2
335
P06746
A
1
2
335
1
8
9ICV
1
8
9ICV
T
2
1
8
1
8
9ICV
1
8
9ICV
P
3
1
8
5
2
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
A
ILE
174
C
ILE
174
A
CYS
178
C
CYS
178
A
MET
191
C
MET
191
A
THR
196
C
THR
196
A
ARG
253
C
ARG
253
A
ARG
258
C
ARG
258
A
LYS
234
C
LYS
234
A
CYS
239
C
CYS
239
A
ILE
224
C
ILE
224
A
THR
227
C
THR
227
A
PHE
291
C
PHE
291
A
ASN
294
C
ASN
294
A
THR
297
C
THR
297
A
PRO
300
C
PRO
300
BINDING SITE FOR RESIDUE ZN A 339
A
ZN
339
Software
5
BINDING SITE FOR RESIDUE ZN A 340
A
ZN
340
Software
6
BINDING SITE FOR RESIDUE NA A 341
A
NA
341
Software
7
BINDING SITE FOR RESIDUE NA A 342
A
NA
342
Software
3
BINDING SITE FOR RESIDUE ZN A 343
A
ZN
343
Software
4
BINDING SITE FOR RESIDUE DTP A 338
A
DTP
338
Software
13
A
ASP
190
C
ASP
190
5
1_555
A
ASP
192
C
ASP
192
5
1_555
A
DTP
338
I
DTP
5
1_555
A
ZN
340
E
ZN
5
1_555
P
DA
8
B
DA
8
5
1_555
A
ASP
190
C
ASP
190
6
1_555
A
ASP
192
C
ASP
192
6
1_555
A
ASP
256
C
ASP
256
6
1_555
A
ZN
339
D
ZN
6
1_555
P
DG
7
B
DG
7
6
1_555
P
DA
8
B
DA
8
6
1_555
A
THR
101
C
THR
101
7
1_555
A
ARG
102
C
ARG
102
7
1_555
A
VAL
103
C
VAL
103
7
1_555
A
SER
104
C
SER
104
7
1_555
A
ILE
106
C
ILE
106
7
1_555
A
HOH
601
L
HOH
7
1_555
P
DT
6
B
DT
6
7
1_555
A
LYS
60
C
LYS
60
3
1_555
A
LEU
62
C
LEU
62
3
1_555
A
VAL
65
C
VAL
65
3
1_555
A
HIS
51
C
HIS
51
4
1_555
A
HIS
134
C
HIS
134
4
1_565
A
HOH
515
L
HOH
4
1_565
A
HOH
516
L
HOH
4
1_565
A
ARG
149
C
ARG
149
13
1_555
A
GLY
179
C
GLY
179
13
1_555
A
SER
180
C
SER
180
13
1_555
A
ARG
183
C
ARG
183
13
1_555
A
SER
188
C
SER
188
13
1_555
A
GLY
189
C
GLY
189
13
1_555
A
ASP
190
C
ASP
190
13
1_555
A
ZN
339
D
ZN
13
1_555
A
HOH
522
L
HOH
13
1_555
A
HOH
631
L
HOH
13
1_555
A
HOH
654
L
HOH
13
1_555
A
HOH
662
L
HOH
13
1_555
P
DA
8
B
DA
8
13
1_555
18
P 21 21 2