data_9BJO # _entry.id 9BJO # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.397 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9BJO pdb_00009bjo 10.2210/pdb9bjo/pdb WWPDB D_1000283474 ? ? EMDB EMD-44637 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2024-09-18 2 'Structure model' 1 1 2024-10-02 3 'Structure model' 1 2 2024-10-23 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' em_admin 3 3 'Structure model' em_admin 4 3 'Structure model' pdbx_entry_details 5 3 'Structure model' pdbx_modification_feature # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' 4 2 'Structure model' '_em_admin.last_update' 5 3 'Structure model' '_em_admin.last_update' 6 3 'Structure model' '_pdbx_entry_details.has_protein_modification' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9BJO _pdbx_database_status.recvd_initial_deposition_date 2024-04-25 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible N # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'Cryo-EM of Azo-ffsy fiber' _pdbx_database_related.db_id EMD-44637 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_contact_author.id 2 _pdbx_contact_author.email fw2@uab.edu _pdbx_contact_author.name_first Fengbin _pdbx_contact_author.name_last Wang _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0003-1008-663X # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Zia, A.' 1 ? 'Guo, J.' 2 ? 'Xu, B.' 3 ? 'Wang, F.' 4 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev J.Am.Chem.Soc. _citation.journal_id_ASTM JACSAT _citation.journal_id_CSD ? _citation.journal_id_ISSN 1520-5126 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 146 _citation.language ? _citation.page_first 26102 _citation.page_last 26112 _citation.title 'Cell-Free Nonequilibrium Assembly for Hierarchical Protein/Peptide Nanopillars.' _citation.year 2024 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1021/jacs.4c06775 _citation.pdbx_database_id_PubMed 39255453 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Guo, J.' 1 0000-0002-0254-0401 primary 'Zia, A.' 2 ? primary 'Qiu, Q.' 3 ? primary 'Norton, M.' 4 ? primary 'Qiu, K.' 5 ? primary 'Usuba, J.' 6 ? primary 'Liu, Z.' 7 ? primary 'Yi, M.' 8 0000-0002-1912-1043 primary 'Rich-New, S.T.' 9 ? primary 'Hagan, M.' 10 0000-0002-9211-2434 primary 'Fraden, S.' 11 ? primary 'Han, G.D.' 12 ? primary 'Diao, J.' 13 0000-0003-4288-3203 primary 'Wang, F.' 14 0000-0003-1008-663X primary 'Xu, B.' 15 0000-0002-4639-387X # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description 'D-peptide ffsy' _entity.formula_weight 770.830 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(D)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(A1APX)(DPN)(DPN)(DSN)(DTY)' _entity_poly.pdbx_seq_one_letter_code_can XFFSY _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 A1APX n 1 2 DPN n 1 3 DPN n 1 4 DSN n 1 5 DTY n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 5 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A1APX non-polymer . '4-[(E)-phenyldiazenyl]benzoic acid' ? 'C13 H10 N2 O2' 226.231 DPN 'D-peptide linking' . D-PHENYLALANINE ? 'C9 H11 N O2' 165.189 DSN 'D-peptide linking' . D-SERINE ? 'C3 H7 N O3' 105.093 DTY 'D-peptide linking' . D-TYROSINE ? 'C9 H11 N O3' 181.189 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 A1APX 1 1 1 A1APX AZO A . n A 1 2 DPN 2 2 2 DPN DPN A . n A 1 3 DPN 3 3 3 DPN DPN A . n A 1 4 DSN 4 4 4 DSN DSN A . n A 1 5 DTY 5 5 5 DTY DTY A . n # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id A1APX _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id A1APX _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9BJO _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _struct.entry_id 9BJO _struct.title 'Cryo-EM of Azo-ffsy fiber' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9BJO _struct_keywords.text 'D-peptide, peptide-fiber, helical, PROTEIN FIBRIL' _struct_keywords.pdbx_keywords 'PROTEIN FIBRIL' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 9BJO _struct_ref.pdbx_db_accession 9BJO _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 9BJO _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 5 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 9BJO _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 5 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 5 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 'representative helical assembly' ? 80-meric 80 2 'helical asymmetric unit' ? monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 '(1-80)' A 2 1 A # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details 'not applicable' # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.00000000 0.00000000 -0.00000000 0.00000 0.00000000 1.00000000 0.00000000 0.00000 -0.00000000 0.00000000 1.00000000 0.00000 2 'helical symmetry operation' ? ? -0.99167100 -0.12879600 -0.00000000 0.00000 0.12879600 -0.99167100 -0.00000000 -0.00000 0.00000000 0.00000000 1.00000000 -26.24000 3 'helical symmetry operation' ? ? -0.55962700 0.82874500 0.00000000 0.00000 -0.82874500 -0.55962700 0.00000000 -0.00000 -0.00000000 -0.00000000 1.00000000 -24.92800 4 'helical symmetry operation' ? ? 0.48999100 0.87172700 -0.00000000 0.00000 -0.87172700 0.48999100 0.00000000 -0.00000 -0.00000000 0.00000000 1.00000000 -23.61600 5 'helical symmetry operation' ? ? 0.99888200 -0.04728100 -0.00000000 0.00000 0.04728100 0.99888200 0.00000000 -0.00000 -0.00000000 0.00000000 1.00000000 -22.30400 6 'helical symmetry operation' ? ? 0.40546100 -0.91411200 -0.00000000 0.00000 0.91411200 0.40546100 0.00000000 -0.00000 -0.00000000 0.00000000 1.00000000 -20.99200 7 'helical symmetry operation' ? ? -0.63540500 -0.77217900 -0.00000000 0.00000 0.77217900 -0.63540500 -0.00000000 -0.00000 0.00000000 0.00000000 1.00000000 -19.68000 8 'helical symmetry operation' ? ? -0.97507200 0.22188900 0.00000000 0.00000 -0.22188900 -0.97507200 0.00000000 -0.00000 -0.00000000 -0.00000000 1.00000000 -18.36800 9 'helical symmetry operation' ? ? -0.23870300 0.97109300 0.00000000 0.00000 -0.97109300 -0.23870300 0.00000000 -0.00000 -0.00000000 -0.00000000 1.00000000 -17.05600 10 'helical symmetry operation' ? ? 0.76108600 0.64865100 -0.00000000 0.00000 -0.64865100 0.76108600 0.00000000 -0.00000 -0.00000000 0.00000000 1.00000000 -15.74400 11 'helical symmetry operation' ? ? 0.92098200 -0.38960600 -0.00000000 0.00000 0.38960600 0.92098200 0.00000000 -0.00000 -0.00000000 0.00000000 1.00000000 -14.43200 12 'helical symmetry operation' ? ? 0.06453200 -0.99791600 -0.00000000 0.00000 0.99791600 0.06453200 0.00000000 -0.00000 0.00000000 0.00000000 1.00000000 -13.12000 13 'helical symmetry operation' ? ? -0.86313100 -0.50498000 -0.00000000 0.00000 0.50498000 -0.86313100 -0.00000000 -0.00000 0.00000000 0.00000000 1.00000000 -11.80800 14 'helical symmetry operation' ? ? -0.83829000 0.54522400 0.00000000 0.00000 -0.54522400 -0.83829000 0.00000000 -0.00000 -0.00000000 -0.00000000 1.00000000 -10.49600 15 'helical symmetry operation' ? ? 0.11164200 0.99374800 0.00000000 0.00000 -0.99374800 0.11164200 0.00000000 -0.00000 -0.00000000 0.00000000 1.00000000 -9.18400 16 'helical symmetry operation' ? ? 0.93837200 0.34562600 -0.00000000 0.00000 -0.34562600 0.93837200 0.00000000 -0.00000 -0.00000000 0.00000000 1.00000000 -7.87200 17 'helical symmetry operation' ? ? 0.72956600 -0.68391100 -0.00000000 0.00000 0.68391100 0.72956600 0.00000000 -0.00000 -0.00000000 0.00000000 1.00000000 -6.56000 18 'helical symmetry operation' ? ? -0.28435000 -0.95872100 -0.00000000 0.00000 0.95872100 -0.28435000 -0.00000000 -0.00000 0.00000000 0.00000000 1.00000000 -5.24800 19 'helical symmetry operation' ? ? -0.98447300 -0.17553900 -0.00000000 0.00000 0.17553900 -0.98447300 -0.00000000 -0.00000 0.00000000 0.00000000 1.00000000 -3.93600 20 'helical symmetry operation' ? ? -0.59818500 0.80135800 0.00000000 0.00000 -0.80135800 -0.59818500 0.00000000 -0.00000 -0.00000000 -0.00000000 1.00000000 -2.62400 21 'helical symmetry operation' ? ? 0.44822700 0.89392000 -0.00000000 0.00000 -0.89392000 0.44822700 0.00000000 -0.00000 -0.00000000 0.00000000 1.00000000 -1.31200 22 'helical symmetry operation' ? ? 0.44822700 -0.89392000 -0.00000000 -0.00000 0.89392000 0.44822700 0.00000000 0.00000 -0.00000000 0.00000000 1.00000000 1.31200 23 'helical symmetry operation' ? ? -0.59818500 -0.80135800 -0.00000000 -0.00000 0.80135800 -0.59818500 -0.00000000 0.00000 0.00000000 0.00000000 1.00000000 2.62400 24 'helical symmetry operation' ? ? -0.98447300 0.17553900 0.00000000 -0.00000 -0.17553900 -0.98447300 0.00000000 0.00000 -0.00000000 -0.00000000 1.00000000 3.93600 25 'helical symmetry operation' ? ? -0.28435000 0.95872100 0.00000000 -0.00000 -0.95872100 -0.28435000 0.00000000 0.00000 -0.00000000 -0.00000000 1.00000000 5.24800 26 'helical symmetry operation' ? ? 0.72956600 0.68391100 -0.00000000 -0.00000 -0.68391100 0.72956600 0.00000000 0.00000 -0.00000000 0.00000000 1.00000000 6.56000 27 'helical symmetry operation' ? ? 0.93837200 -0.34562600 -0.00000000 -0.00000 0.34562600 0.93837200 0.00000000 0.00000 -0.00000000 0.00000000 1.00000000 7.87200 28 'helical symmetry operation' ? ? 0.11164200 -0.99374800 -0.00000000 -0.00000 0.99374800 0.11164200 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 9.18400 29 'helical symmetry operation' ? ? -0.83829000 -0.54522400 -0.00000000 -0.00000 0.54522400 -0.83829000 -0.00000000 0.00000 0.00000000 0.00000000 1.00000000 10.49600 30 'helical symmetry operation' ? ? -0.86313100 0.50498000 0.00000000 -0.00000 -0.50498000 -0.86313100 0.00000000 0.00000 -0.00000000 -0.00000000 1.00000000 11.80800 31 'helical symmetry operation' ? ? 0.06453200 0.99791600 0.00000000 -0.00000 -0.99791600 0.06453200 0.00000000 0.00000 -0.00000000 0.00000000 1.00000000 13.12000 32 'helical symmetry operation' ? ? 0.92098200 0.38960600 -0.00000000 -0.00000 -0.38960600 0.92098200 0.00000000 0.00000 -0.00000000 0.00000000 1.00000000 14.43200 33 'helical symmetry operation' ? ? 0.76108600 -0.64865100 -0.00000000 -0.00000 0.64865100 0.76108600 0.00000000 0.00000 -0.00000000 0.00000000 1.00000000 15.74400 34 'helical symmetry operation' ? ? -0.23870300 -0.97109300 -0.00000000 -0.00000 0.97109300 -0.23870300 -0.00000000 0.00000 0.00000000 0.00000000 1.00000000 17.05600 35 'helical symmetry operation' ? ? -0.97507200 -0.22188900 -0.00000000 -0.00000 0.22188900 -0.97507200 -0.00000000 0.00000 0.00000000 0.00000000 1.00000000 18.36800 36 'helical symmetry operation' ? ? -0.63540500 0.77217900 0.00000000 -0.00000 -0.77217900 -0.63540500 0.00000000 0.00000 -0.00000000 -0.00000000 1.00000000 19.68000 37 'helical symmetry operation' ? ? 0.40546100 0.91411200 -0.00000000 -0.00000 -0.91411200 0.40546100 0.00000000 0.00000 -0.00000000 0.00000000 1.00000000 20.99200 38 'helical symmetry operation' ? ? 0.99888200 0.04728100 -0.00000000 -0.00000 -0.04728100 0.99888200 0.00000000 0.00000 -0.00000000 0.00000000 1.00000000 22.30400 39 'helical symmetry operation' ? ? 0.48999100 -0.87172700 -0.00000000 -0.00000 0.87172700 0.48999100 0.00000000 0.00000 -0.00000000 0.00000000 1.00000000 23.61600 40 'helical symmetry operation' ? ? -0.55962700 -0.82874500 -0.00000000 -0.00000 0.82874500 -0.55962700 -0.00000000 0.00000 0.00000000 0.00000000 1.00000000 24.92800 41 'helical symmetry operation' ? ? 0.99167100 0.12879600 -0.00000000 0.00000 -0.12879600 0.99167100 0.00000000 -0.00000 -0.00000000 0.00000000 1.00000000 -26.24000 42 'helical symmetry operation' ? ? 0.55962700 -0.82874500 -0.00000000 0.00000 0.82874500 0.55962700 0.00000000 -0.00000 -0.00000000 0.00000000 1.00000000 -24.92800 43 'helical symmetry operation' ? ? -0.48999100 -0.87172700 -0.00000000 0.00000 0.87172700 -0.48999100 -0.00000000 -0.00000 0.00000000 0.00000000 1.00000000 -23.61600 44 'helical symmetry operation' ? ? -0.99888200 0.04728100 0.00000000 0.00000 -0.04728100 -0.99888200 0.00000000 -0.00000 -0.00000000 -0.00000000 1.00000000 -22.30400 45 'helical symmetry operation' ? ? -0.40546100 0.91411200 0.00000000 0.00000 -0.91411200 -0.40546100 0.00000000 -0.00000 -0.00000000 -0.00000000 1.00000000 -20.99200 46 'helical symmetry operation' ? ? 0.63540500 0.77217900 -0.00000000 0.00000 -0.77217900 0.63540500 0.00000000 -0.00000 -0.00000000 0.00000000 1.00000000 -19.68000 47 'helical symmetry operation' ? ? 0.97507200 -0.22188900 -0.00000000 0.00000 0.22188900 0.97507200 0.00000000 -0.00000 -0.00000000 0.00000000 1.00000000 -18.36800 48 'helical symmetry operation' ? ? 0.23870300 -0.97109300 -0.00000000 0.00000 0.97109300 0.23870300 0.00000000 -0.00000 -0.00000000 0.00000000 1.00000000 -17.05600 49 'helical symmetry operation' ? ? -0.76108600 -0.64865100 -0.00000000 0.00000 0.64865100 -0.76108600 -0.00000000 -0.00000 0.00000000 0.00000000 1.00000000 -15.74400 50 'helical symmetry operation' ? ? -0.92098200 0.38960600 0.00000000 0.00000 -0.38960600 -0.92098200 0.00000000 -0.00000 -0.00000000 -0.00000000 1.00000000 -14.43200 51 'helical symmetry operation' ? ? -0.06453200 0.99791600 0.00000000 0.00000 -0.99791600 -0.06453200 0.00000000 -0.00000 -0.00000000 0.00000000 1.00000000 -13.12000 52 'helical symmetry operation' ? ? 0.86313100 0.50498000 -0.00000000 0.00000 -0.50498000 0.86313100 0.00000000 -0.00000 -0.00000000 0.00000000 1.00000000 -11.80800 53 'helical symmetry operation' ? ? 0.83829000 -0.54522400 -0.00000000 0.00000 0.54522400 0.83829000 0.00000000 -0.00000 -0.00000000 0.00000000 1.00000000 -10.49600 54 'helical symmetry operation' ? ? -0.11164200 -0.99374800 -0.00000000 0.00000 0.99374800 -0.11164200 0.00000000 -0.00000 0.00000000 0.00000000 1.00000000 -9.18400 55 'helical symmetry operation' ? ? -0.93837200 -0.34562600 -0.00000000 0.00000 0.34562600 -0.93837200 -0.00000000 -0.00000 0.00000000 0.00000000 1.00000000 -7.87200 56 'helical symmetry operation' ? ? -0.72956600 0.68391100 0.00000000 0.00000 -0.68391100 -0.72956600 0.00000000 -0.00000 -0.00000000 -0.00000000 1.00000000 -6.56000 57 'helical symmetry operation' ? ? 0.28435000 0.95872100 -0.00000000 0.00000 -0.95872100 0.28435000 0.00000000 -0.00000 -0.00000000 0.00000000 1.00000000 -5.24800 58 'helical symmetry operation' ? ? 0.98447300 0.17553900 -0.00000000 0.00000 -0.17553900 0.98447300 0.00000000 -0.00000 -0.00000000 0.00000000 1.00000000 -3.93600 59 'helical symmetry operation' ? ? 0.59818500 -0.80135800 -0.00000000 0.00000 0.80135800 0.59818500 0.00000000 -0.00000 -0.00000000 0.00000000 1.00000000 -2.62400 60 'helical symmetry operation' ? ? -0.44822700 -0.89392000 -0.00000000 0.00000 0.89392000 -0.44822700 -0.00000000 -0.00000 0.00000000 0.00000000 1.00000000 -1.31200 61 'helical symmetry operation' ? ? -1.00000000 -0.00000000 -0.00000000 0.00000 -0.00000000 -1.00000000 0.00000000 0.00000 -0.00000000 0.00000000 1.00000000 0.00000 62 'helical symmetry operation' ? ? -0.44822700 0.89392000 0.00000000 -0.00000 -0.89392000 -0.44822700 0.00000000 0.00000 -0.00000000 -0.00000000 1.00000000 1.31200 63 'helical symmetry operation' ? ? 0.59818500 0.80135800 -0.00000000 -0.00000 -0.80135800 0.59818500 0.00000000 0.00000 -0.00000000 0.00000000 1.00000000 2.62400 64 'helical symmetry operation' ? ? 0.98447300 -0.17553900 -0.00000000 -0.00000 0.17553900 0.98447300 0.00000000 0.00000 -0.00000000 0.00000000 1.00000000 3.93600 65 'helical symmetry operation' ? ? 0.28435000 -0.95872100 -0.00000000 -0.00000 0.95872100 0.28435000 0.00000000 0.00000 -0.00000000 0.00000000 1.00000000 5.24800 66 'helical symmetry operation' ? ? -0.72956600 -0.68391100 -0.00000000 -0.00000 0.68391100 -0.72956600 -0.00000000 0.00000 0.00000000 0.00000000 1.00000000 6.56000 67 'helical symmetry operation' ? ? -0.93837200 0.34562600 0.00000000 -0.00000 -0.34562600 -0.93837200 0.00000000 0.00000 -0.00000000 -0.00000000 1.00000000 7.87200 68 'helical symmetry operation' ? ? -0.11164200 0.99374800 0.00000000 -0.00000 -0.99374800 -0.11164200 0.00000000 0.00000 -0.00000000 0.00000000 1.00000000 9.18400 69 'helical symmetry operation' ? ? 0.83829000 0.54522400 -0.00000000 -0.00000 -0.54522400 0.83829000 0.00000000 0.00000 -0.00000000 0.00000000 1.00000000 10.49600 70 'helical symmetry operation' ? ? 0.86313100 -0.50498000 -0.00000000 -0.00000 0.50498000 0.86313100 0.00000000 0.00000 -0.00000000 0.00000000 1.00000000 11.80800 71 'helical symmetry operation' ? ? -0.06453200 -0.99791600 -0.00000000 -0.00000 0.99791600 -0.06453200 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 13.12000 72 'helical symmetry operation' ? ? -0.92098200 -0.38960600 -0.00000000 -0.00000 0.38960600 -0.92098200 -0.00000000 0.00000 0.00000000 0.00000000 1.00000000 14.43200 73 'helical symmetry operation' ? ? -0.76108600 0.64865100 0.00000000 -0.00000 -0.64865100 -0.76108600 0.00000000 0.00000 -0.00000000 -0.00000000 1.00000000 15.74400 74 'helical symmetry operation' ? ? 0.23870300 0.97109300 -0.00000000 -0.00000 -0.97109300 0.23870300 0.00000000 0.00000 -0.00000000 0.00000000 1.00000000 17.05600 75 'helical symmetry operation' ? ? 0.97507200 0.22188900 -0.00000000 -0.00000 -0.22188900 0.97507200 0.00000000 0.00000 -0.00000000 0.00000000 1.00000000 18.36800 76 'helical symmetry operation' ? ? 0.63540500 -0.77217900 -0.00000000 -0.00000 0.77217900 0.63540500 0.00000000 0.00000 -0.00000000 0.00000000 1.00000000 19.68000 77 'helical symmetry operation' ? ? -0.40546100 -0.91411200 -0.00000000 -0.00000 0.91411200 -0.40546100 -0.00000000 0.00000 0.00000000 0.00000000 1.00000000 20.99200 78 'helical symmetry operation' ? ? -0.99888200 -0.04728100 -0.00000000 -0.00000 0.04728100 -0.99888200 -0.00000000 0.00000 0.00000000 0.00000000 1.00000000 22.30400 79 'helical symmetry operation' ? ? -0.48999100 0.87172700 0.00000000 -0.00000 -0.87172700 -0.48999100 0.00000000 0.00000 -0.00000000 -0.00000000 1.00000000 23.61600 80 'helical symmetry operation' ? ? 0.55962700 0.82874500 -0.00000000 -0.00000 -0.82874500 0.55962700 0.00000000 0.00000 -0.00000000 0.00000000 1.00000000 24.92800 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A A1APX 1 C ? ? ? 1_555 A DPN 2 N ? ? A A1APX 1 A DPN 2 1_555 ? ? ? ? ? ? ? 1.428 ? ? covale2 covale both ? A DPN 2 C ? ? ? 1_555 A DPN 3 N ? ? A DPN 2 A DPN 3 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale3 covale both ? A DPN 3 C ? ? ? 1_555 A DSN 4 N ? ? A DPN 3 A DSN 4 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale4 covale both ? A DSN 4 C ? ? ? 1_555 A DTY 5 N ? ? A DSN 4 A DTY 5 1_555 ? ? ? ? ? ? ? 1.318 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _pdbx_modification_feature.ordinal 1 _pdbx_modification_feature.label_comp_id A1APX _pdbx_modification_feature.label_asym_id A _pdbx_modification_feature.label_seq_id 1 _pdbx_modification_feature.label_alt_id ? _pdbx_modification_feature.modified_residue_label_comp_id . _pdbx_modification_feature.modified_residue_label_asym_id . _pdbx_modification_feature.modified_residue_label_seq_id . _pdbx_modification_feature.modified_residue_label_alt_id . _pdbx_modification_feature.auth_comp_id A1APX _pdbx_modification_feature.auth_asym_id A _pdbx_modification_feature.auth_seq_id 1 _pdbx_modification_feature.PDB_ins_code ? _pdbx_modification_feature.symmetry 1_555 _pdbx_modification_feature.modified_residue_auth_comp_id . _pdbx_modification_feature.modified_residue_auth_asym_id . _pdbx_modification_feature.modified_residue_auth_seq_id . _pdbx_modification_feature.modified_residue_PDB_ins_code . _pdbx_modification_feature.modified_residue_symmetry . _pdbx_modification_feature.comp_id_linking_atom . _pdbx_modification_feature.modified_residue_id_linking_atom . _pdbx_modification_feature.modified_residue_id ? _pdbx_modification_feature.ref_pcm_id 1 _pdbx_modification_feature.ref_comp_id A1APX _pdbx_modification_feature.type None _pdbx_modification_feature.category 'Non-standard residue' # _pdbx_entry_details.entry_id 9BJO _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_protein_modification Y # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 A1APX _pdbx_validate_close_contact.auth_seq_id_1 1 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 N _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 DPN _pdbx_validate_close_contact.auth_seq_id_2 2 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 1.71 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 O _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 A1APX _pdbx_validate_rmsd_angle.auth_seq_id_1 1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 C _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 A1APX _pdbx_validate_rmsd_angle.auth_seq_id_2 1 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 N _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 DPN _pdbx_validate_rmsd_angle.auth_seq_id_3 2 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 79.32 _pdbx_validate_rmsd_angle.angle_target_value 122.70 _pdbx_validate_rmsd_angle.angle_deviation -43.38 _pdbx_validate_rmsd_angle.angle_standard_deviation 1.60 _pdbx_validate_rmsd_angle.linker_flag Y # _pdbx_helical_symmetry.entry_id 9BJO _pdbx_helical_symmetry.number_of_operations 80 _pdbx_helical_symmetry.rotation_per_n_subunits 63.370 _pdbx_helical_symmetry.rise_per_n_subunits 1.312 _pdbx_helical_symmetry.n_subunits_divisor 1 _pdbx_helical_symmetry.dyad_axis no _pdbx_helical_symmetry.circular_symmetry 2 # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 9BJO _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space ? _em_3d_fitting.ref_protocol ? # _em_3d_reconstruction.entry_id 9BJO _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 2.8 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 3485262 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type HELICAL # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details ? _em_buffer.pH 7 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source NATURAL _em_entity_assembly.type COMPLEX _em_entity_assembly.name 'ffsy fiber' _em_entity_assembly.details ? _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list 1 # _em_imaging.entry_id 9BJO _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model ? _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_min 1000 _em_imaging.nominal_defocus_max 2000 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification ? _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.specimen_id 1 _em_imaging.cryogen ? # _em_vitrification.entry_id 9BJO _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity ? _em_vitrification.temp ? _em_vitrification.chamber_temperature ? _em_vitrification.instrument ? _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ? # _em_experiment.entry_id 9BJO _em_experiment.id 1 _em_experiment.reconstruction_method HELICAL _em_experiment.aggregation_state FILAMENT _em_experiment.entity_assembly_id 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A1APX C12 C Y N 1 A1APX C13 C Y N 2 A1APX C14 C Y N 3 A1APX C15 C Y N 4 A1APX C16 C Y N 5 A1APX C17 C Y N 6 A1APX C C N N 7 A1APX O O N N 8 A1APX C04 C Y N 9 A1APX C05 C Y N 10 A1APX C06 C Y N 11 A1APX C07 C Y N 12 A1APX C08 C Y N 13 A1APX C09 C Y N 14 A1APX N10 N N N 15 A1APX N11 N N N 16 A1APX O1 O N N 17 A1APX H1 H N N 18 A1APX H2 H N N 19 A1APX H3 H N N 20 A1APX H4 H N N 21 A1APX H5 H N N 22 A1APX H6 H N N 23 A1APX H7 H N N 24 A1APX H8 H N N 25 A1APX H9 H N N 26 A1APX H10 H N N 27 DPN N N N N 28 DPN CA C N R 29 DPN C C N N 30 DPN O O N N 31 DPN OXT O N N 32 DPN CB C N N 33 DPN CG C Y N 34 DPN CD1 C Y N 35 DPN CD2 C Y N 36 DPN CE1 C Y N 37 DPN CE2 C Y N 38 DPN CZ C Y N 39 DPN H H N N 40 DPN H2 H N N 41 DPN HA H N N 42 DPN HXT H N N 43 DPN HB2 H N N 44 DPN HB3 H N N 45 DPN HD1 H N N 46 DPN HD2 H N N 47 DPN HE1 H N N 48 DPN HE2 H N N 49 DPN HZ H N N 50 DSN N N N N 51 DSN CA C N R 52 DSN C C N N 53 DSN O O N N 54 DSN OXT O N N 55 DSN CB C N N 56 DSN OG O N N 57 DSN H H N N 58 DSN H2 H N N 59 DSN HA H N N 60 DSN HXT H N N 61 DSN HB2 H N N 62 DSN HB3 H N N 63 DSN HG H N N 64 DTY N N N N 65 DTY CA C N R 66 DTY C C N N 67 DTY O O N N 68 DTY CB C N N 69 DTY CG C Y N 70 DTY CD1 C Y N 71 DTY CD2 C Y N 72 DTY CE1 C Y N 73 DTY CE2 C Y N 74 DTY CZ C Y N 75 DTY OH O N N 76 DTY OXT O N N 77 DTY H H N N 78 DTY H2 H N N 79 DTY HA H N N 80 DTY HB2 H N N 81 DTY HB3 H N N 82 DTY HD1 H N N 83 DTY HD2 H N N 84 DTY HE1 H N N 85 DTY HE2 H N N 86 DTY HH H N N 87 DTY HXT H N N 88 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1APX C14 C13 doub Y N 1 A1APX C14 C15 sing Y N 2 A1APX C13 C12 sing Y N 3 A1APX C15 C16 doub Y N 4 A1APX C12 N11 sing N N 5 A1APX C12 C17 doub Y N 6 A1APX C16 C17 sing Y N 7 A1APX N11 N10 doub N N 8 A1APX C06 C05 doub Y N 9 A1APX C06 C09 sing Y N 10 A1APX C05 C04 sing Y N 11 A1APX N10 C09 sing N N 12 A1APX C09 C08 doub Y N 13 A1APX O C doub N N 14 A1APX C04 C sing N N 15 A1APX C04 C07 doub Y N 16 A1APX C08 C07 sing Y N 17 A1APX C O1 sing N N 18 A1APX C13 H1 sing N N 19 A1APX C14 H2 sing N N 20 A1APX C15 H3 sing N N 21 A1APX C16 H4 sing N N 22 A1APX C17 H5 sing N N 23 A1APX C05 H6 sing N N 24 A1APX C06 H7 sing N N 25 A1APX C07 H8 sing N N 26 A1APX C08 H9 sing N N 27 A1APX O1 H10 sing N N 28 DPN N CA sing N N 29 DPN N H sing N N 30 DPN N H2 sing N N 31 DPN CA C sing N N 32 DPN CA CB sing N N 33 DPN CA HA sing N N 34 DPN C O doub N N 35 DPN C OXT sing N N 36 DPN OXT HXT sing N N 37 DPN CB CG sing N N 38 DPN CB HB2 sing N N 39 DPN CB HB3 sing N N 40 DPN CG CD1 doub Y N 41 DPN CG CD2 sing Y N 42 DPN CD1 CE1 sing Y N 43 DPN CD1 HD1 sing N N 44 DPN CD2 CE2 doub Y N 45 DPN CD2 HD2 sing N N 46 DPN CE1 CZ doub Y N 47 DPN CE1 HE1 sing N N 48 DPN CE2 CZ sing Y N 49 DPN CE2 HE2 sing N N 50 DPN CZ HZ sing N N 51 DSN N CA sing N N 52 DSN N H sing N N 53 DSN N H2 sing N N 54 DSN CA C sing N N 55 DSN CA CB sing N N 56 DSN CA HA sing N N 57 DSN C O doub N N 58 DSN C OXT sing N N 59 DSN OXT HXT sing N N 60 DSN CB OG sing N N 61 DSN CB HB2 sing N N 62 DSN CB HB3 sing N N 63 DSN OG HG sing N N 64 DTY N CA sing N N 65 DTY N H sing N N 66 DTY N H2 sing N N 67 DTY CA C sing N N 68 DTY CA CB sing N N 69 DTY CA HA sing N N 70 DTY C O doub N N 71 DTY C OXT sing N N 72 DTY CB CG sing N N 73 DTY CB HB2 sing N N 74 DTY CB HB3 sing N N 75 DTY CG CD1 doub Y N 76 DTY CG CD2 sing Y N 77 DTY CD1 CE1 sing Y N 78 DTY CD1 HD1 sing N N 79 DTY CD2 CE2 doub Y N 80 DTY CD2 HD2 sing N N 81 DTY CE1 CZ doub Y N 82 DTY CE1 HE1 sing N N 83 DTY CE2 CZ sing Y N 84 DTY CE2 HE2 sing N N 85 DTY CZ OH sing N N 86 DTY OH HH sing N N 87 DTY OXT HXT sing N N 88 # _em_admin.current_status REL _em_admin.deposition_date 2024-04-25 _em_admin.deposition_site RCSB _em_admin.entry_id 9BJO _em_admin.last_update 2024-10-23 _em_admin.map_release_date 2024-09-18 _em_admin.title 'Cryo-EM of Azo-ffsy fiber' # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 32630 _em_entity_assembly_naturalsource.organism 'synthetic construct' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? _em_entity_assembly_naturalsource.details ? # _em_helical_entity.id 1 _em_helical_entity.image_processing_id 1 _em_helical_entity.details ? _em_helical_entity.axial_symmetry C2 _em_helical_entity.angular_rotation_per_subunit 63.370 _em_helical_entity.axial_rise_per_subunit 1.312 # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time ? _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 50 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 (6k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version 'PARTICLE SELECTION' ? 1 1 ? ? ? ? 'IMAGE ACQUISITION' ? 2 ? ? 1 ? ? MASKING ? 3 ? ? ? ? ? 'CTF CORRECTION' ? 4 1 ? ? ? ? 'LAYERLINE INDEXING' ? 5 ? ? ? ? ? 'DIFFRACTION INDEXING' ? 6 ? ? ? ? ? 'MODEL FITTING' ? 7 ? ? ? ? ? 'MODEL REFINEMENT' ? 8 ? ? ? ? ? OTHER ? 9 ? ? ? ? ? 'INITIAL EULER ASSIGNMENT' ? 10 1 ? ? ? ? 'FINAL EULER ASSIGNMENT' ? 11 1 ? ? ? ? CLASSIFICATION ? 12 1 ? ? ? ? RECONSTRUCTION ? 13 1 ? ? ? ? # _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' GM138756 1 'National Institutes of Health/National Cancer Institute (NIH/NCI)' 'United States' CA142746 2 # _atom_sites.entry_id 9BJO _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_alt_id _atom_site.label_comp_id _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.label_seq_id _atom_site.pdbx_PDB_ins_code _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_seq_id _atom_site.auth_comp_id _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.pdbx_PDB_model_num HETATM 1 C C12 . A1APX A 1 1 ? -2.509 6.564 20.374 1.00 102.14 ? 1 A1APX A C12 1 HETATM 2 C C13 . A1APX A 1 1 ? -1.310 6.975 20.898 1.00 102.14 ? 1 A1APX A C13 1 HETATM 3 C C14 . A1APX A 1 1 ? -0.435 6.051 21.425 1.00 102.14 ? 1 A1APX A C14 1 HETATM 4 C C15 . A1APX A 1 1 ? -0.759 4.718 21.424 1.00 102.14 ? 1 A1APX A C15 1 HETATM 5 C C16 . A1APX A 1 1 ? -1.960 4.312 20.895 1.00 102.14 ? 1 A1APX A C16 1 HETATM 6 C C17 . A1APX A 1 1 ? -2.834 5.233 20.364 1.00 102.14 ? 1 A1APX A C17 1 HETATM 7 C C . A1APX A 1 1 ? -8.463 10.284 16.956 1.00 102.14 ? 1 A1APX A C 1 HETATM 8 O O . A1APX A 1 1 ? -8.491 11.499 17.236 1.00 102.14 ? 1 A1APX A O 1 HETATM 9 C C04 . A1APX A 1 1 ? -7.392 9.437 17.603 1.00 102.14 ? 1 A1APX A C04 1 HETATM 10 C C05 . A1APX A 1 1 ? -6.252 10.027 18.086 1.00 102.14 ? 1 A1APX A C05 1 HETATM 11 C C06 . A1APX A 1 1 ? -5.274 9.256 18.672 1.00 102.14 ? 1 A1APX A C06 1 HETATM 12 C C07 . A1APX A 1 1 ? -7.566 8.085 17.686 1.00 102.14 ? 1 A1APX A C07 1 HETATM 13 C C08 . A1APX A 1 1 ? -6.588 7.316 18.270 1.00 102.14 ? 1 A1APX A C08 1 HETATM 14 C C09 . A1APX A 1 1 ? -5.445 7.899 18.757 1.00 102.14 ? 1 A1APX A C09 1 HETATM 15 N N10 . A1APX A 1 1 ? -4.448 7.057 19.365 1.00 102.14 ? 1 A1APX A N10 1 HETATM 16 N N11 . A1APX A 1 1 ? -3.430 7.512 19.808 1.00 102.14 ? 1 A1APX A N11 1 HETATM 17 N N . DPN A 1 2 ? -9.720 10.372 17.627 1.00 99.95 ? 2 DPN A N 1 HETATM 18 C CA . DPN A 1 2 ? -10.825 11.029 16.957 1.00 99.95 ? 2 DPN A CA 1 HETATM 19 C C . DPN A 1 2 ? -11.848 10.015 16.527 1.00 99.95 ? 2 DPN A C 1 HETATM 20 O O . DPN A 1 2 ? -12.188 9.113 17.278 1.00 99.95 ? 2 DPN A O 1 HETATM 21 C CB . DPN A 1 2 ? -11.469 12.050 17.869 1.00 99.95 ? 2 DPN A CB 1 HETATM 22 C CG . DPN A 1 2 ? -12.213 13.110 17.152 1.00 99.95 ? 2 DPN A CG 1 HETATM 23 C CD1 . DPN A 1 2 ? -11.577 14.245 16.741 1.00 99.95 ? 2 DPN A CD1 1 HETATM 24 C CD2 . DPN A 1 2 ? -13.550 12.981 16.903 1.00 99.95 ? 2 DPN A CD2 1 HETATM 25 C CE1 . DPN A 1 2 ? -12.257 15.223 16.101 1.00 99.95 ? 2 DPN A CE1 1 HETATM 26 C CE2 . DPN A 1 2 ? -14.228 13.962 16.260 1.00 99.95 ? 2 DPN A CE2 1 HETATM 27 C CZ . DPN A 1 2 ? -13.581 15.080 15.855 1.00 99.95 ? 2 DPN A CZ 1 HETATM 28 N N . DPN A 1 3 ? -12.370 10.193 15.323 1.00 99.83 ? 3 DPN A N 1 HETATM 29 C CA . DPN A 1 3 ? -13.222 9.206 14.685 1.00 99.83 ? 3 DPN A CA 1 HETATM 30 C C . DPN A 1 3 ? -14.474 9.899 14.174 1.00 99.83 ? 3 DPN A C 1 HETATM 31 O O . DPN A 1 3 ? -14.449 10.503 13.101 1.00 99.83 ? 3 DPN A O 1 HETATM 32 C CB . DPN A 1 3 ? -12.464 8.550 13.542 1.00 99.83 ? 3 DPN A CB 1 HETATM 33 C CG . DPN A 1 3 ? -11.502 7.498 13.980 1.00 99.83 ? 3 DPN A CG 1 HETATM 34 C CD1 . DPN A 1 3 ? -10.162 7.774 14.050 1.00 99.83 ? 3 DPN A CD1 1 HETATM 35 C CD2 . DPN A 1 3 ? -11.922 6.232 14.279 1.00 99.83 ? 3 DPN A CD2 1 HETATM 36 C CE1 . DPN A 1 3 ? -9.271 6.821 14.429 1.00 99.83 ? 3 DPN A CE1 1 HETATM 37 C CE2 . DPN A 1 3 ? -11.023 5.276 14.653 1.00 99.83 ? 3 DPN A CE2 1 HETATM 38 C CZ . DPN A 1 3 ? -9.698 5.576 14.730 1.00 99.83 ? 3 DPN A CZ 1 HETATM 39 N N . DSN A 1 4 ? -15.566 9.799 14.924 1.00 98.11 ? 4 DSN A N 1 HETATM 40 C CA . DSN A 1 4 ? -16.810 10.498 14.603 1.00 98.11 ? 4 DSN A CA 1 HETATM 41 C C . DSN A 1 4 ? -17.706 9.548 13.826 1.00 98.11 ? 4 DSN A C 1 HETATM 42 O O . DSN A 1 4 ? -18.508 8.812 14.391 1.00 98.11 ? 4 DSN A O 1 HETATM 43 C CB . DSN A 1 4 ? -17.498 10.985 15.829 1.00 98.11 ? 4 DSN A CB 1 HETATM 44 O OG . DSN A 1 4 ? -16.734 11.975 16.473 1.00 98.11 ? 4 DSN A OG 1 HETATM 45 N N . DTY A 1 5 ? -17.586 9.593 12.514 1.00 99.18 ? 5 DTY A N 1 HETATM 46 C CA . DTY A 1 5 ? -18.344 8.704 11.667 1.00 99.18 ? 5 DTY A CA 1 HETATM 47 C C . DTY A 1 5 ? -19.782 9.144 11.633 1.00 99.18 ? 5 DTY A C 1 HETATM 48 O O . DTY A 1 5 ? -20.124 10.161 12.213 1.00 99.18 ? 5 DTY A O 1 HETATM 49 C CB . DTY A 1 5 ? -17.749 8.680 10.276 1.00 99.18 ? 5 DTY A CB 1 HETATM 50 C CG . DTY A 1 5 ? -16.557 7.788 10.208 1.00 99.18 ? 5 DTY A CG 1 HETATM 51 C CD1 . DTY A 1 5 ? -15.301 8.300 9.997 1.00 99.18 ? 5 DTY A CD1 1 HETATM 52 C CD2 . DTY A 1 5 ? -16.688 6.433 10.363 1.00 99.18 ? 5 DTY A CD2 1 HETATM 53 C CE1 . DTY A 1 5 ? -14.212 7.484 9.949 1.00 99.18 ? 5 DTY A CE1 1 HETATM 54 C CE2 . DTY A 1 5 ? -15.609 5.615 10.307 1.00 99.18 ? 5 DTY A CE2 1 HETATM 55 C CZ . DTY A 1 5 ? -14.374 6.142 10.096 1.00 99.18 ? 5 DTY A CZ 1 HETATM 56 O OH . DTY A 1 5 ? -13.290 5.311 10.042 1.00 99.18 ? 5 DTY A OH 1 HETATM 57 O OXT . DTY A 1 5 ? -20.630 8.500 11.037 1.00 99.18 ? 5 DTY A OXT 1 #